Experiment: Varel_Bryant medium with Chlorpromazine 0.05 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0379 and BT0380 are separated by 4 nucleotides BT0380 and BT0381 are separated by 34 nucleotides
BT0379: BT0379 - UDP-glucose 6-dehydrogenase (NCBI ptt file), at 466,367 to 467,683
BT0379
BT0380: BT0380 - nucleotide sugar epimerase (NCBI ptt file), at 467,688 to 468,761
BT0380
BT0381: BT0381 - capsular polysaccharide biosynthesis protein capD (NCBI ptt file), at 468,796 to 469,845
BT0381
Position (kb) 467
468
469 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 466.726 kb on - strand at 466.726 kb on - strand, within BT0379 at 466.732 kb on + strand, within BT0379 at 466.855 kb on - strand, within BT0379 at 466.856 kb on + strand, within BT0379 at 467.036 kb on - strand, within BT0379 at 467.038 kb on - strand, within BT0379 at 467.068 kb on + strand, within BT0379 at 467.071 kb on + strand, within BT0379 at 467.072 kb on - strand, within BT0379 at 467.097 kb on - strand, within BT0379 at 467.113 kb on + strand, within BT0379 at 467.154 kb on + strand, within BT0379 at 467.361 kb on - strand, within BT0379 at 467.361 kb on - strand, within BT0379 at 467.507 kb on - strand, within BT0379 at 467.697 kb on + strand at 467.697 kb on + strand at 467.697 kb on + strand at 467.828 kb on - strand, within BT0380 at 467.833 kb on - strand, within BT0380 at 468.128 kb on + strand, within BT0380 at 468.144 kb on - strand, within BT0380 at 468.144 kb on - strand, within BT0380 at 468.303 kb on + strand, within BT0380 at 468.326 kb on - strand, within BT0380 at 468.358 kb on - strand, within BT0380 at 468.400 kb on + strand, within BT0380 at 468.474 kb on + strand, within BT0380 at 468.486 kb on - strand, within BT0380 at 468.498 kb on - strand, within BT0380 at 468.645 kb on - strand, within BT0380 at 468.723 kb on + strand at 468.723 kb on + strand at 468.760 kb on - strand at 468.880 kb on - strand at 469.046 kb on - strand, within BT0381 at 469.048 kb on - strand, within BT0381 at 469.135 kb on - strand, within BT0381 at 469.178 kb on + strand, within BT0381 at 469.178 kb on + strand, within BT0381 at 469.184 kb on + strand, within BT0381 at 469.210 kb on - strand, within BT0381 at 469.218 kb on + strand, within BT0381 at 469.256 kb on + strand, within BT0381 at 469.260 kb on + strand, within BT0381 at 469.271 kb on - strand, within BT0381 at 469.392 kb on + strand, within BT0381 at 469.690 kb on - strand, within BT0381 at 469.720 kb on - strand, within BT0381 at 469.749 kb on + strand at 469.749 kb on + strand at 469.754 kb on - strand at 469.755 kb on + strand at 469.758 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.05 mM remove 466,726 - +2.0 466,726 - BT0379 0.27 -1.9 466,732 + BT0379 0.28 -0.4 466,855 - BT0379 0.37 -1.5 466,856 + BT0379 0.37 -0.3 467,036 - BT0379 0.51 -0.0 467,038 - BT0379 0.51 +0.5 467,068 + BT0379 0.53 -0.0 467,071 + BT0379 0.53 -0.0 467,072 - BT0379 0.54 +1.5 467,097 - BT0379 0.55 -1.4 467,113 + BT0379 0.57 -1.2 467,154 + BT0379 0.60 -1.6 467,361 - BT0379 0.75 -1.9 467,361 - BT0379 0.75 -2.5 467,507 - BT0379 0.87 -1.0 467,697 + -0.4 467,697 + -1.0 467,697 + +1.0 467,828 - BT0380 0.13 -0.4 467,833 - BT0380 0.14 -1.0 468,128 + BT0380 0.41 -0.0 468,144 - BT0380 0.42 -2.1 468,144 - BT0380 0.42 -1.4 468,303 + BT0380 0.57 -2.0 468,326 - BT0380 0.59 -0.0 468,358 - BT0380 0.62 -1.4 468,400 + BT0380 0.66 +1.0 468,474 + BT0380 0.73 -1.0 468,486 - BT0380 0.74 -1.0 468,498 - BT0380 0.75 -1.4 468,645 - BT0380 0.89 -1.2 468,723 + -2.4 468,723 + -0.3 468,760 - -1.7 468,880 - -1.2 469,046 - BT0381 0.24 -2.1 469,048 - BT0381 0.24 -1.0 469,135 - BT0381 0.32 +1.0 469,178 + BT0381 0.36 -0.6 469,178 + BT0381 0.36 -0.4 469,184 + BT0381 0.37 +2.0 469,210 - BT0381 0.39 -2.2 469,218 + BT0381 0.40 -1.6 469,256 + BT0381 0.44 -1.8 469,260 + BT0381 0.44 -0.0 469,271 - BT0381 0.45 -0.8 469,392 + BT0381 0.57 +1.0 469,690 - BT0381 0.85 +1.0 469,720 - BT0381 0.88 -0.6 469,749 + -1.2 469,749 + +0.1 469,754 - -1.9 469,755 + -2.2 469,758 - -4.0
Or see this region's nucleotide sequence