Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0231

Experiment: Varel_Bryant medium with Chlorpromazine 0.05 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0230 and BT0231 are separated by 37 nucleotidesBT0231 and BT0232 are separated by 108 nucleotides BT0230: BT0230 - conserved hypothetical protein (NCBI ptt file), at 250,714 to 252,072 BT0230 BT0231: BT0231 - excisionase (NCBI ptt file), at 252,110 to 252,481 BT0231 BT0232: BT0232 - putative protein involved in transposition (NCBI ptt file), at 252,590 to 253,357 BT0232 Position (kb) 252 253Strain fitness (log2 ratio) -2 -1 0 1at 251.203 kb on - strand, within BT0230at 251.238 kb on + strand, within BT0230at 251.249 kb on + strand, within BT0230at 251.474 kb on - strand, within BT0230at 251.606 kb on + strand, within BT0230at 251.866 kb on - strand, within BT0230at 251.907 kb on + strand, within BT0230at 251.963 kb on + strandat 251.999 kb on - strandat 252.085 kb on - strandat 252.347 kb on - strand, within BT0231at 252.350 kb on + strand, within BT0231at 252.351 kb on - strand, within BT0231at 252.358 kb on + strand, within BT0231at 252.653 kb on - strandat 252.906 kb on - strand, within BT0232at 252.947 kb on - strand, within BT0232at 252.965 kb on + strand, within BT0232at 252.966 kb on - strand, within BT0232at 253.020 kb on - strand, within BT0232at 253.265 kb on + strand, within BT0232at 253.268 kb on - strand, within BT0232at 253.268 kb on - strand, within BT0232at 253.274 kb on - strand, within BT0232at 253.327 kb on + strandat 253.353 kb on - strandat 253.359 kb on - strandat 253.464 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.05 mM
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251,203 - BT0230 0.36 -0.7
251,238 + BT0230 0.39 -2.7
251,249 + BT0230 0.39 -0.0
251,474 - BT0230 0.56 -2.3
251,606 + BT0230 0.66 +1.6
251,866 - BT0230 0.85 -2.5
251,907 + BT0230 0.88 -0.0
251,963 + -1.0
251,999 - -0.9
252,085 - +1.0
252,347 - BT0231 0.64 -1.0
252,350 + BT0231 0.65 -1.6
252,351 - BT0231 0.65 -0.3
252,358 + BT0231 0.67 -2.2
252,653 - -0.0
252,906 - BT0232 0.41 -0.6
252,947 - BT0232 0.46 +1.0
252,965 + BT0232 0.49 +0.4
252,966 - BT0232 0.49 +0.6
253,020 - BT0232 0.56 +0.3
253,265 + BT0232 0.88 +1.0
253,268 - BT0232 0.88 -1.4
253,268 - BT0232 0.88 +1.0
253,274 - BT0232 0.89 +1.0
253,327 + +1.0
253,353 - -2.5
253,359 - +0.4
253,464 + +1.3

Or see this region's nucleotide sequence