Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0068

Experiment: Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0067 and DVUA0068 are separated by 51 nucleotidesDVUA0068 and DORF526 are separated by 43 nucleotidesDORF526 and DVUA0069 overlap by 118 nucleotides DVUA0067: DVUA0067 - membrane protein, putative (TIGR), at 87,157 to 88,281 DVUA0067 DVUA0068: DVUA0068 - membrane protein, putative (TIGR), at 88,333 to 90,315 DVUA0068 DORF526: DORF526 - SEED: FIG00606858: hypothetical protein, at 90,359 to 90,988 DORF526 DVUA0069: DVUA0069 - GtrA family protein, selenocysteine-containing (TIGR), at 90,871 to 92,028 DVUA0069 Position (kb) 88 89 90 91Strain fitness (log2 ratio) -2 -1 0 1 2at 87.409 kb on + strand, within DVUA0067at 88.068 kb on + strand, within DVUA0067at 88.291 kb on - strandat 88.403 kb on + strandat 88.530 kb on + strandat 88.760 kb on + strand, within DVUA0068at 88.930 kb on + strand, within DVUA0068at 88.942 kb on - strand, within DVUA0068at 88.996 kb on + strand, within DVUA0068at 88.997 kb on - strand, within DVUA0068at 88.999 kb on - strand, within DVUA0068at 89.092 kb on + strand, within DVUA0068at 89.100 kb on - strand, within DVUA0068at 89.153 kb on + strand, within DVUA0068at 89.170 kb on + strand, within DVUA0068at 89.210 kb on + strand, within DVUA0068at 89.222 kb on + strand, within DVUA0068at 89.245 kb on + strand, within DVUA0068at 89.275 kb on + strand, within DVUA0068at 89.355 kb on - strand, within DVUA0068at 89.403 kb on + strand, within DVUA0068at 89.535 kb on + strand, within DVUA0068at 89.538 kb on - strand, within DVUA0068at 89.561 kb on - strand, within DVUA0068at 89.639 kb on + strand, within DVUA0068at 89.670 kb on + strand, within DVUA0068at 89.737 kb on - strand, within DVUA0068at 89.813 kb on - strand, within DVUA0068at 89.833 kb on + strand, within DVUA0068at 89.841 kb on - strand, within DVUA0068at 89.992 kb on + strand, within DVUA0068at 90.058 kb on + strand, within DVUA0068at 90.066 kb on - strand, within DVUA0068at 90.070 kb on + strand, within DVUA0068at 90.103 kb on - strand, within DVUA0068at 90.103 kb on - strand, within DVUA0068at 90.159 kb on - strandat 90.180 kb on - strandat 90.279 kb on + strandat 90.279 kb on + strandat 90.366 kb on + strandat 90.411 kb on - strandat 90.421 kb on + strandat 90.421 kb on + strandat 90.421 kb on + strandat 90.479 kb on + strand, within DORF526at 90.526 kb on + strand, within DORF526at 90.534 kb on - strand, within DORF526at 90.581 kb on - strand, within DORF526at 90.590 kb on - strand, within DORF526at 90.638 kb on + strand, within DORF526at 90.647 kb on - strand, within DORF526at 90.649 kb on + strand, within DORF526at 90.657 kb on - strand, within DORF526at 90.720 kb on + strand, within DORF526at 90.761 kb on + strand, within DORF526at 90.789 kb on + strand, within DORF526at 90.859 kb on + strand, within DORF526at 90.974 kb on - strandat 91.001 kb on + strand, within DVUA0069at 91.112 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.275 kb on + strand, within DVUA0069

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Fluorophosphate 1mM
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87,409 + DVUA0067 0.22 +0.1
88,068 + DVUA0067 0.81 -0.6
88,291 - -1.1
88,403 + +0.3
88,530 + +0.1
88,760 + DVUA0068 0.22 -0.3
88,930 + DVUA0068 0.30 +0.3
88,942 - DVUA0068 0.31 -2.0
88,996 + DVUA0068 0.33 +0.8
88,997 - DVUA0068 0.33 -0.9
88,999 - DVUA0068 0.34 -1.0
89,092 + DVUA0068 0.38 -0.5
89,100 - DVUA0068 0.39 -0.9
89,153 + DVUA0068 0.41 +0.1
89,170 + DVUA0068 0.42 +2.6
89,210 + DVUA0068 0.44 -0.5
89,222 + DVUA0068 0.45 -0.3
89,245 + DVUA0068 0.46 -0.7
89,275 + DVUA0068 0.48 +0.3
89,355 - DVUA0068 0.52 -1.2
89,403 + DVUA0068 0.54 +0.1
89,535 + DVUA0068 0.61 -0.9
89,538 - DVUA0068 0.61 -0.2
89,561 - DVUA0068 0.62 +1.0
89,639 + DVUA0068 0.66 -1.1
89,670 + DVUA0068 0.67 -1.3
89,737 - DVUA0068 0.71 -0.2
89,813 - DVUA0068 0.75 -0.2
89,833 + DVUA0068 0.76 -0.8
89,841 - DVUA0068 0.76 -0.7
89,992 + DVUA0068 0.84 +0.1
90,058 + DVUA0068 0.87 -2.3
90,066 - DVUA0068 0.87 -0.3
90,070 + DVUA0068 0.88 -1.2
90,103 - DVUA0068 0.89 -0.9
90,103 - DVUA0068 0.89 -1.9
90,159 - -0.2
90,180 - -0.3
90,279 + +0.3
90,279 + +1.5
90,366 + -0.5
90,411 - -0.3
90,421 + +0.9
90,421 + -0.7
90,421 + -0.1
90,479 + DORF526 0.19 -0.5
90,526 + DORF526 0.27 -1.2
90,534 - DORF526 0.28 -0.2
90,581 - DORF526 0.35 +0.3
90,590 - DORF526 0.37 +1.0
90,638 + DORF526 0.44 -0.2
90,647 - DORF526 0.46 -0.7
90,649 + DORF526 0.46 -0.5
90,657 - DORF526 0.47 +0.1
90,720 + DORF526 0.57 -0.1
90,761 + DORF526 0.64 -0.9
90,789 + DORF526 0.68 -1.5
90,859 + DORF526 0.79 -2.0
90,974 - +1.0
91,001 + DVUA0069 0.11 -0.4
91,112 - DVUA0069 0.21 -0.5
91,231 - DVUA0069 0.31 +0.3
91,231 - DVUA0069 0.31 -2.7
91,275 + DVUA0069 0.35 -1.2

Or see this region's nucleotide sequence