Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3200

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3199 and Pf6N2E2_6116 are separated by 108 nucleotidesPf6N2E2_6116 and Pf6N2E2_3200 are separated by 789 nucleotides Pf6N2E2_3199 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-), at 3,692,704 to 3,693,753 _3199 Pf6N2E2_6116 - tRNA-Leu-CAA, at 3,693,862 to 3,693,943 _6116 Pf6N2E2_3200 - Putative membrane protein, at 3,694,733 to 3,698,722 _3200 Position (kb) 3694 3695 3696 3697 3698 3699Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3694.092 kb on - strandat 3694.092 kb on - strandat 3694.092 kb on - strandat 3694.094 kb on + strandat 3694.094 kb on + strandat 3694.094 kb on + strandat 3694.283 kb on + strandat 3694.283 kb on + strandat 3694.284 kb on - strandat 3694.300 kb on + strandat 3694.301 kb on - strandat 3694.397 kb on - strandat 3694.467 kb on + strandat 3694.467 kb on + strandat 3694.467 kb on + strandat 3694.527 kb on + strandat 3694.530 kb on + strandat 3694.531 kb on - strandat 3694.544 kb on + strandat 3694.545 kb on - strandat 3694.664 kb on + strandat 3694.716 kb on + strandat 3694.723 kb on + strandat 3694.803 kb on + strandat 3694.830 kb on + strandat 3694.880 kb on + strandat 3694.884 kb on + strandat 3694.884 kb on + strandat 3694.885 kb on - strandat 3694.885 kb on - strandat 3694.885 kb on - strandat 3694.885 kb on - strandat 3694.898 kb on - strandat 3695.075 kb on - strandat 3695.128 kb on - strandat 3695.282 kb on + strand, within Pf6N2E2_3200at 3695.283 kb on - strand, within Pf6N2E2_3200at 3695.283 kb on - strand, within Pf6N2E2_3200at 3695.370 kb on + strand, within Pf6N2E2_3200at 3695.740 kb on - strand, within Pf6N2E2_3200at 3695.773 kb on - strand, within Pf6N2E2_3200at 3696.417 kb on + strand, within Pf6N2E2_3200at 3696.832 kb on + strand, within Pf6N2E2_3200at 3696.939 kb on + strand, within Pf6N2E2_3200at 3697.043 kb on + strand, within Pf6N2E2_3200at 3697.200 kb on + strand, within Pf6N2E2_3200at 3697.367 kb on + strand, within Pf6N2E2_3200at 3697.376 kb on + strand, within Pf6N2E2_3200at 3697.602 kb on + strand, within Pf6N2E2_3200at 3697.603 kb on - strand, within Pf6N2E2_3200at 3697.608 kb on + strand, within Pf6N2E2_3200at 3697.957 kb on - strand, within Pf6N2E2_3200at 3697.957 kb on - strand, within Pf6N2E2_3200at 3698.084 kb on - strand, within Pf6N2E2_3200at 3698.084 kb on - strand, within Pf6N2E2_3200at 3698.132 kb on + strand, within Pf6N2E2_3200at 3698.263 kb on - strand, within Pf6N2E2_3200at 3698.378 kb on - strandat 3698.605 kb on - strandat 3698.711 kb on - strandat 3698.738 kb on + strandat 3698.901 kb on - strandat 3699.015 kb on - strandat 3699.015 kb on - strandat 3699.024 kb on - strandat 3699.169 kb on - strandat 3699.180 kb on - strandat 3699.190 kb on - strandat 3699.241 kb on - strandat 3699.451 kb on + strandat 3699.460 kb on + strandat 3699.460 kb on + strandat 3699.486 kb on + strandat 3699.567 kb on + strandat 3699.687 kb on + strandat 3699.687 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,694,092 - +0.6
3,694,092 - -0.0
3,694,092 - +0.1
3,694,094 + -0.5
3,694,094 + -0.1
3,694,094 + +1.1
3,694,283 + -0.1
3,694,283 + -0.1
3,694,284 - +0.7
3,694,300 + +2.9
3,694,301 - -0.6
3,694,397 - +0.5
3,694,467 + +0.6
3,694,467 + -0.8
3,694,467 + +0.7
3,694,527 + -0.2
3,694,530 + -0.1
3,694,531 - +0.3
3,694,544 + -1.1
3,694,545 - -0.2
3,694,664 + -0.5
3,694,716 + +0.6
3,694,723 + -1.2
3,694,803 + -0.2
3,694,830 + -2.7
3,694,880 + +0.9
3,694,884 + +0.3
3,694,884 + -1.5
3,694,885 - -0.0
3,694,885 - +0.2
3,694,885 - -0.3
3,694,885 - -0.7
3,694,898 - -0.1
3,695,075 - +1.9
3,695,128 - +0.9
3,695,282 + Pf6N2E2_3200 0.14 +0.0
3,695,283 - Pf6N2E2_3200 0.14 +1.3
3,695,283 - Pf6N2E2_3200 0.14 +0.7
3,695,370 + Pf6N2E2_3200 0.16 +0.9
3,695,740 - Pf6N2E2_3200 0.25 +0.3
3,695,773 - Pf6N2E2_3200 0.26 -0.9
3,696,417 + Pf6N2E2_3200 0.42 +1.7
3,696,832 + Pf6N2E2_3200 0.53 -0.2
3,696,939 + Pf6N2E2_3200 0.55 +0.3
3,697,043 + Pf6N2E2_3200 0.58 +1.0
3,697,200 + Pf6N2E2_3200 0.62 +1.1
3,697,367 + Pf6N2E2_3200 0.66 +1.1
3,697,376 + Pf6N2E2_3200 0.66 -1.1
3,697,602 + Pf6N2E2_3200 0.72 -0.1
3,697,603 - Pf6N2E2_3200 0.72 +1.4
3,697,608 + Pf6N2E2_3200 0.72 +0.8
3,697,957 - Pf6N2E2_3200 0.81 +0.6
3,697,957 - Pf6N2E2_3200 0.81 +0.4
3,698,084 - Pf6N2E2_3200 0.84 -0.0
3,698,084 - Pf6N2E2_3200 0.84 -0.7
3,698,132 + Pf6N2E2_3200 0.85 +0.6
3,698,263 - Pf6N2E2_3200 0.88 -0.1
3,698,378 - -0.8
3,698,605 - -0.6
3,698,711 - +0.5
3,698,738 + +1.0
3,698,901 - +0.0
3,699,015 - +0.8
3,699,015 - -0.5
3,699,024 - +0.5
3,699,169 - +0.3
3,699,180 - -1.7
3,699,190 - +0.6
3,699,241 - -0.2
3,699,451 + -0.0
3,699,460 + +0.6
3,699,460 + -0.3
3,699,486 + -1.1
3,699,567 + -1.0
3,699,687 + -0.3
3,699,687 + -2.3

Or see this region's nucleotide sequence