Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2992

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2991 and Pf6N2E2_2992 are separated by 46 nucleotidesPf6N2E2_2992 and Pf6N2E2_2993 are separated by 53 nucleotides Pf6N2E2_2991 - decarboxylase, at 3,483,333 to 3,484,451 _2991 Pf6N2E2_2992 - Regulatory protein RecX, at 3,484,498 to 3,484,920 _2992 Pf6N2E2_2993 - RecA protein, at 3,484,974 to 3,486,026 _2993 Position (kb) 3484 3485Strain fitness (log2 ratio) -3 -2 -1 0 1at 3483.526 kb on + strand, within Pf6N2E2_2991at 3483.526 kb on + strand, within Pf6N2E2_2991at 3483.526 kb on + strand, within Pf6N2E2_2991at 3483.526 kb on + strand, within Pf6N2E2_2991at 3483.526 kb on + strand, within Pf6N2E2_2991at 3483.527 kb on - strand, within Pf6N2E2_2991at 3483.527 kb on - strand, within Pf6N2E2_2991at 3483.527 kb on - strand, within Pf6N2E2_2991at 3483.636 kb on + strand, within Pf6N2E2_2991at 3483.637 kb on - strand, within Pf6N2E2_2991at 3483.637 kb on - strand, within Pf6N2E2_2991at 3483.637 kb on - strand, within Pf6N2E2_2991at 3483.848 kb on + strand, within Pf6N2E2_2991at 3483.848 kb on + strand, within Pf6N2E2_2991at 3483.940 kb on + strand, within Pf6N2E2_2991at 3483.940 kb on + strand, within Pf6N2E2_2991at 3483.941 kb on - strand, within Pf6N2E2_2991at 3483.941 kb on - strand, within Pf6N2E2_2991at 3484.090 kb on - strand, within Pf6N2E2_2991at 3484.192 kb on + strand, within Pf6N2E2_2991at 3484.192 kb on + strand, within Pf6N2E2_2991at 3484.192 kb on + strand, within Pf6N2E2_2991at 3484.193 kb on - strand, within Pf6N2E2_2991at 3484.269 kb on + strand, within Pf6N2E2_2991at 3484.269 kb on + strand, within Pf6N2E2_2991at 3484.269 kb on + strand, within Pf6N2E2_2991at 3484.270 kb on - strand, within Pf6N2E2_2991at 3484.270 kb on - strand, within Pf6N2E2_2991at 3484.371 kb on + strandat 3484.371 kb on + strandat 3484.457 kb on + strandat 3484.481 kb on + strandat 3484.481 kb on + strandat 3484.482 kb on - strandat 3484.482 kb on - strandat 3484.482 kb on - strandat 3484.499 kb on + strandat 3484.606 kb on + strand, within Pf6N2E2_2992at 3484.606 kb on + strand, within Pf6N2E2_2992at 3484.607 kb on - strand, within Pf6N2E2_2992at 3484.607 kb on - strand, within Pf6N2E2_2992at 3484.763 kb on + strand, within Pf6N2E2_2992at 3484.764 kb on - strand, within Pf6N2E2_2992at 3484.872 kb on + strand, within Pf6N2E2_2992at 3484.873 kb on - strand, within Pf6N2E2_2992at 3484.873 kb on - strand, within Pf6N2E2_2992at 3485.466 kb on + strand, within Pf6N2E2_2993at 3485.816 kb on + strand, within Pf6N2E2_2993

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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3,483,526 + Pf6N2E2_2991 0.17 -0.3
3,483,526 + Pf6N2E2_2991 0.17 +0.3
3,483,526 + Pf6N2E2_2991 0.17 -0.4
3,483,526 + Pf6N2E2_2991 0.17 +1.3
3,483,526 + Pf6N2E2_2991 0.17 +0.1
3,483,527 - Pf6N2E2_2991 0.17 -1.0
3,483,527 - Pf6N2E2_2991 0.17 -0.9
3,483,527 - Pf6N2E2_2991 0.17 -0.6
3,483,636 + Pf6N2E2_2991 0.27 -0.5
3,483,637 - Pf6N2E2_2991 0.27 -0.5
3,483,637 - Pf6N2E2_2991 0.27 -0.1
3,483,637 - Pf6N2E2_2991 0.27 -0.2
3,483,848 + Pf6N2E2_2991 0.46 -0.7
3,483,848 + Pf6N2E2_2991 0.46 +0.2
3,483,940 + Pf6N2E2_2991 0.54 +0.2
3,483,940 + Pf6N2E2_2991 0.54 +0.2
3,483,941 - Pf6N2E2_2991 0.54 +0.7
3,483,941 - Pf6N2E2_2991 0.54 -0.0
3,484,090 - Pf6N2E2_2991 0.68 -0.5
3,484,192 + Pf6N2E2_2991 0.77 +0.1
3,484,192 + Pf6N2E2_2991 0.77 +0.0
3,484,192 + Pf6N2E2_2991 0.77 -0.2
3,484,193 - Pf6N2E2_2991 0.77 -0.3
3,484,269 + Pf6N2E2_2991 0.84 -1.4
3,484,269 + Pf6N2E2_2991 0.84 -0.3
3,484,269 + Pf6N2E2_2991 0.84 +1.0
3,484,270 - Pf6N2E2_2991 0.84 -0.1
3,484,270 - Pf6N2E2_2991 0.84 +0.0
3,484,371 + +0.3
3,484,371 + +0.8
3,484,457 + +0.6
3,484,481 + +0.9
3,484,481 + -0.8
3,484,482 - +1.0
3,484,482 - -0.1
3,484,482 - -1.4
3,484,499 + -0.6
3,484,606 + Pf6N2E2_2992 0.26 -1.9
3,484,606 + Pf6N2E2_2992 0.26 -0.8
3,484,607 - Pf6N2E2_2992 0.26 +0.1
3,484,607 - Pf6N2E2_2992 0.26 -1.2
3,484,763 + Pf6N2E2_2992 0.63 -2.0
3,484,764 - Pf6N2E2_2992 0.63 -2.9
3,484,872 + Pf6N2E2_2992 0.88 -0.5
3,484,873 - Pf6N2E2_2992 0.89 -0.9
3,484,873 - Pf6N2E2_2992 0.89 -1.1
3,485,466 + Pf6N2E2_2993 0.47 -2.5
3,485,816 + Pf6N2E2_2993 0.80 -2.2

Or see this region's nucleotide sequence