Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2804 and Pf6N2E2_2805 are separated by 81 nucleotides Pf6N2E2_2805 and Pf6N2E2_2806 are separated by 129 nucleotides Pf6N2E2_2806 and Pf6N2E2_2807 are separated by 294 nucleotides
Pf6N2E2_2804 - FIG00955946: hypothetical protein, at 3,290,827 to 3,291,171
_2804
Pf6N2E2_2805 - ThiJ/PfpI family protein, at 3,291,253 to 3,291,834
_2805
Pf6N2E2_2806 - Methyltransferase (EC 2.1.1.-), at 3,291,964 to 3,293,181
_2806
Pf6N2E2_2807 - FIG126011: Hypothetical protein, at 3,293,476 to 3,294,945
_2807
Position (kb)
3291
3292
3293
3294 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3290.972 kb on + strand, within Pf6N2E2_2804 at 3290.972 kb on + strand, within Pf6N2E2_2804 at 3290.972 kb on + strand, within Pf6N2E2_2804 at 3290.972 kb on + strand, within Pf6N2E2_2804 at 3290.972 kb on + strand, within Pf6N2E2_2804 at 3290.973 kb on - strand, within Pf6N2E2_2804 at 3290.973 kb on - strand, within Pf6N2E2_2804 at 3290.973 kb on - strand, within Pf6N2E2_2804 at 3291.005 kb on + strand, within Pf6N2E2_2804 at 3291.005 kb on + strand, within Pf6N2E2_2804 at 3291.005 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.074 kb on + strand, within Pf6N2E2_2804 at 3291.075 kb on - strand, within Pf6N2E2_2804 at 3291.075 kb on - strand, within Pf6N2E2_2804 at 3291.075 kb on - strand, within Pf6N2E2_2804 at 3291.075 kb on - strand at 3291.075 kb on - strand, within Pf6N2E2_2804 at 3291.119 kb on - strand, within Pf6N2E2_2804 at 3291.208 kb on + strand at 3291.208 kb on + strand at 3291.251 kb on + strand at 3291.251 kb on + strand at 3291.252 kb on - strand at 3291.252 kb on - strand at 3291.252 kb on - strand at 3291.252 kb on - strand at 3291.252 kb on - strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.254 kb on + strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.255 kb on - strand at 3291.376 kb on - strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.377 kb on + strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.378 kb on - strand, within Pf6N2E2_2805 at 3291.554 kb on + strand, within Pf6N2E2_2805 at 3291.555 kb on - strand, within Pf6N2E2_2805 at 3291.594 kb on - strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.659 kb on + strand, within Pf6N2E2_2805 at 3291.660 kb on - strand, within Pf6N2E2_2805 at 3291.660 kb on - strand, within Pf6N2E2_2805 at 3291.660 kb on - strand, within Pf6N2E2_2805 at 3291.660 kb on - strand, within Pf6N2E2_2805 at 3291.786 kb on - strand at 3291.786 kb on - strand at 3291.786 kb on - strand at 3291.786 kb on - strand at 3291.797 kb on + strand at 3291.797 kb on + strand at 3291.798 kb on - strand at 3291.798 kb on - strand at 3291.861 kb on + strand at 3291.861 kb on + strand at 3291.862 kb on - strand at 3291.862 kb on - strand at 3291.862 kb on - strand at 3291.877 kb on + strand at 3291.878 kb on - strand at 3291.883 kb on + strand at 3291.883 kb on + strand at 3291.891 kb on + strand at 3291.911 kb on - strand at 3291.921 kb on + strand at 3291.922 kb on - strand at 3291.922 kb on - strand at 3291.922 kb on - strand at 3291.974 kb on + strand at 3291.975 kb on - strand at 3292.229 kb on + strand, within Pf6N2E2_2806 at 3292.545 kb on - strand, within Pf6N2E2_2806 at 3292.545 kb on - strand, within Pf6N2E2_2806 at 3292.568 kb on + strand, within Pf6N2E2_2806 at 3292.853 kb on + strand, within Pf6N2E2_2806 at 3292.853 kb on + strand, within Pf6N2E2_2806 at 3292.979 kb on + strand, within Pf6N2E2_2806 at 3293.062 kb on + strand at 3293.062 kb on + strand at 3293.063 kb on - strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.066 kb on + strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.067 kb on - strand at 3293.224 kb on - strand at 3293.229 kb on - strand at 3293.477 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.496 kb on + strand at 3293.497 kb on - strand at 3293.690 kb on + strand, within Pf6N2E2_2807 at 3293.918 kb on + strand, within Pf6N2E2_2807 at 3293.919 kb on - strand, within Pf6N2E2_2807 at 3293.973 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.975 kb on + strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.976 kb on - strand, within Pf6N2E2_2807 at 3293.982 kb on - strand, within Pf6N2E2_2807 at 3293.982 kb on - strand, within Pf6N2E2_2807 at 3294.098 kb on - strand, within Pf6N2E2_2807 at 3294.114 kb on + strand, within Pf6N2E2_2807 at 3294.115 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807 at 3294.118 kb on - strand, within Pf6N2E2_2807
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 3,290,972 + Pf6N2E2_2804 0.42 -0.7 3,290,972 + Pf6N2E2_2804 0.42 -0.4 3,290,972 + Pf6N2E2_2804 0.42 +0.3 3,290,972 + Pf6N2E2_2804 0.42 -0.3 3,290,972 + Pf6N2E2_2804 0.42 +1.7 3,290,973 - Pf6N2E2_2804 0.42 -0.0 3,290,973 - Pf6N2E2_2804 0.42 +1.4 3,290,973 - Pf6N2E2_2804 0.42 +0.2 3,291,005 + Pf6N2E2_2804 0.52 -1.0 3,291,005 + Pf6N2E2_2804 0.52 -0.7 3,291,005 + Pf6N2E2_2804 0.52 -0.3 3,291,074 + Pf6N2E2_2804 0.72 -0.2 3,291,074 + Pf6N2E2_2804 0.72 -0.7 3,291,074 + Pf6N2E2_2804 0.72 -0.2 3,291,074 + Pf6N2E2_2804 0.72 +0.2 3,291,074 + Pf6N2E2_2804 0.72 -2.3 3,291,074 + Pf6N2E2_2804 0.72 +0.0 3,291,075 - Pf6N2E2_2804 0.72 -0.1 3,291,075 - Pf6N2E2_2804 0.72 +0.4 3,291,075 - Pf6N2E2_2804 0.72 +1.7 3,291,075 - +1.1 3,291,075 - Pf6N2E2_2804 0.72 +0.1 3,291,119 - Pf6N2E2_2804 0.85 +0.1 3,291,208 + -0.6 3,291,208 + -0.2 3,291,251 + +0.2 3,291,251 + +0.2 3,291,252 - -0.1 3,291,252 - -0.8 3,291,252 - -0.9 3,291,252 - +1.0 3,291,252 - +0.2 3,291,254 + +0.7 3,291,254 + -0.6 3,291,254 + +0.7 3,291,254 + -0.4 3,291,254 + +0.0 3,291,254 + -1.7 3,291,254 + -0.3 3,291,254 + +1.0 3,291,255 - +0.4 3,291,255 - -0.1 3,291,255 - +0.3 3,291,255 - -0.3 3,291,255 - -1.6 3,291,255 - -0.5 3,291,255 - -0.1 3,291,255 - -0.7 3,291,255 - -0.1 3,291,255 - -0.7 3,291,376 - Pf6N2E2_2805 0.21 +0.9 3,291,377 + Pf6N2E2_2805 0.21 -0.1 3,291,377 + Pf6N2E2_2805 0.21 +0.0 3,291,377 + Pf6N2E2_2805 0.21 +0.4 3,291,377 + Pf6N2E2_2805 0.21 +0.9 3,291,377 + Pf6N2E2_2805 0.21 -0.2 3,291,377 + Pf6N2E2_2805 0.21 -0.2 3,291,377 + Pf6N2E2_2805 0.21 +0.9 3,291,377 + Pf6N2E2_2805 0.21 +0.4 3,291,377 + Pf6N2E2_2805 0.21 -0.1 3,291,377 + Pf6N2E2_2805 0.21 +0.2 3,291,378 - Pf6N2E2_2805 0.21 -1.4 3,291,378 - Pf6N2E2_2805 0.21 -1.5 3,291,378 - Pf6N2E2_2805 0.21 +0.2 3,291,378 - Pf6N2E2_2805 0.21 +0.4 3,291,378 - Pf6N2E2_2805 0.21 +0.2 3,291,378 - Pf6N2E2_2805 0.21 -1.2 3,291,378 - Pf6N2E2_2805 0.21 +0.1 3,291,378 - Pf6N2E2_2805 0.21 -0.4 3,291,554 + Pf6N2E2_2805 0.52 -1.1 3,291,555 - Pf6N2E2_2805 0.52 +0.5 3,291,594 - Pf6N2E2_2805 0.59 +1.1 3,291,659 + Pf6N2E2_2805 0.70 -0.2 3,291,659 + Pf6N2E2_2805 0.70 +1.2 3,291,659 + Pf6N2E2_2805 0.70 +0.1 3,291,659 + Pf6N2E2_2805 0.70 +0.5 3,291,659 + Pf6N2E2_2805 0.70 +0.7 3,291,659 + Pf6N2E2_2805 0.70 +0.3 3,291,659 + Pf6N2E2_2805 0.70 +0.6 3,291,660 - Pf6N2E2_2805 0.70 -2.6 3,291,660 - Pf6N2E2_2805 0.70 +0.4 3,291,660 - Pf6N2E2_2805 0.70 -0.8 3,291,660 - Pf6N2E2_2805 0.70 +0.9 3,291,786 - +0.5 3,291,786 - -0.0 3,291,786 - +0.4 3,291,786 - -0.2 3,291,797 + +0.1 3,291,797 + +0.6 3,291,798 - -0.1 3,291,798 - +0.4 3,291,861 + -1.9 3,291,861 + +0.1 3,291,862 - +0.6 3,291,862 - -0.2 3,291,862 - +0.0 3,291,877 + +1.5 3,291,878 - +0.1 3,291,883 + +1.2 3,291,883 + +0.6 3,291,891 + +1.5 3,291,911 - -0.1 3,291,921 + -1.1 3,291,922 - -0.4 3,291,922 - -0.4 3,291,922 - -0.6 3,291,974 + -1.2 3,291,975 - -1.1 3,292,229 + Pf6N2E2_2806 0.22 +1.7 3,292,545 - Pf6N2E2_2806 0.48 -0.6 3,292,545 - Pf6N2E2_2806 0.48 +0.1 3,292,568 + Pf6N2E2_2806 0.50 -0.2 3,292,853 + Pf6N2E2_2806 0.73 +1.1 3,292,853 + Pf6N2E2_2806 0.73 +1.2 3,292,979 + Pf6N2E2_2806 0.83 -0.8 3,293,062 + -3.1 3,293,062 + -0.4 3,293,063 - -0.9 3,293,066 + +1.0 3,293,066 + +0.8 3,293,066 + +0.4 3,293,066 + -0.3 3,293,066 + +0.2 3,293,067 - -0.2 3,293,067 - -0.2 3,293,067 - -1.7 3,293,067 - +0.5 3,293,067 - -0.3 3,293,067 - -0.2 3,293,224 - -0.2 3,293,229 - +0.2 3,293,477 + -1.8 3,293,496 + +0.3 3,293,496 + +0.2 3,293,496 + +0.4 3,293,496 + -0.0 3,293,496 + -0.4 3,293,497 - +0.2 3,293,690 + Pf6N2E2_2807 0.15 +0.0 3,293,918 + Pf6N2E2_2807 0.30 -2.1 3,293,919 - Pf6N2E2_2807 0.30 -1.1 3,293,973 + Pf6N2E2_2807 0.34 +0.2 3,293,975 + Pf6N2E2_2807 0.34 -0.2 3,293,975 + Pf6N2E2_2807 0.34 +0.2 3,293,975 + Pf6N2E2_2807 0.34 -1.1 3,293,975 + Pf6N2E2_2807 0.34 -0.6 3,293,975 + Pf6N2E2_2807 0.34 +0.4 3,293,975 + Pf6N2E2_2807 0.34 -0.1 3,293,976 - Pf6N2E2_2807 0.34 -1.9 3,293,976 - Pf6N2E2_2807 0.34 -0.2 3,293,976 - Pf6N2E2_2807 0.34 -0.3 3,293,976 - Pf6N2E2_2807 0.34 +0.5 3,293,976 - Pf6N2E2_2807 0.34 -0.4 3,293,976 - Pf6N2E2_2807 0.34 -0.6 3,293,976 - Pf6N2E2_2807 0.34 -1.0 3,293,976 - Pf6N2E2_2807 0.34 +0.4 3,293,976 - Pf6N2E2_2807 0.34 +0.4 3,293,976 - Pf6N2E2_2807 0.34 -0.6 3,293,976 - Pf6N2E2_2807 0.34 +0.0 3,293,976 - Pf6N2E2_2807 0.34 +0.3 3,293,982 - Pf6N2E2_2807 0.34 -0.7 3,293,982 - Pf6N2E2_2807 0.34 -0.5 3,294,098 - Pf6N2E2_2807 0.42 +0.2 3,294,114 + Pf6N2E2_2807 0.43 +1.1 3,294,115 - Pf6N2E2_2807 0.43 +0.6 3,294,118 - Pf6N2E2_2807 0.44 -0.3 3,294,118 - Pf6N2E2_2807 0.44 +0.9 3,294,118 - Pf6N2E2_2807 0.44 +0.2 3,294,118 - Pf6N2E2_2807 0.44 +1.1
Or see this region's nucleotide sequence