Experiment: Chloride 500 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2127 and Pf6N2E2_2128 are separated by 109 nucleotides Pf6N2E2_2128 and Pf6N2E2_2129 are separated by 79 nucleotides
Pf6N2E2_2127 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 2,531,285 to 2,532,694
_2127
Pf6N2E2_2128 - Short-chain dehydrogenase/reductase SDR, at 2,532,804 to 2,533,550
_2128
Pf6N2E2_2129 - Predicted dye-decolorizing peroxidase (DyP), YfeX-like subgroup, at 2,533,630 to 2,534,508
_2129
Position (kb)
2532
2533
2534 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2531.894 kb on + strand, within Pf6N2E2_2127 at 2531.894 kb on + strand, within Pf6N2E2_2127 at 2531.895 kb on - strand, within Pf6N2E2_2127 at 2531.895 kb on - strand, within Pf6N2E2_2127 at 2532.146 kb on + strand, within Pf6N2E2_2127 at 2532.147 kb on - strand, within Pf6N2E2_2127 at 2532.350 kb on + strand, within Pf6N2E2_2127 at 2532.350 kb on + strand, within Pf6N2E2_2127 at 2532.350 kb on + strand, within Pf6N2E2_2127 at 2532.443 kb on + strand, within Pf6N2E2_2127 at 2532.486 kb on - strand, within Pf6N2E2_2127 at 2532.623 kb on + strand at 2532.790 kb on + strand at 2532.790 kb on + strand at 2532.791 kb on - strand at 2532.791 kb on - strand at 2532.845 kb on - strand at 2532.979 kb on + strand, within Pf6N2E2_2128 at 2532.979 kb on + strand, within Pf6N2E2_2128 at 2532.979 kb on + strand, within Pf6N2E2_2128 at 2533.090 kb on + strand, within Pf6N2E2_2128 at 2533.090 kb on + strand, within Pf6N2E2_2128 at 2533.090 kb on + strand, within Pf6N2E2_2128 at 2533.091 kb on - strand, within Pf6N2E2_2128 at 2533.212 kb on + strand, within Pf6N2E2_2128 at 2533.212 kb on + strand, within Pf6N2E2_2128 at 2533.213 kb on - strand, within Pf6N2E2_2128 at 2533.453 kb on + strand, within Pf6N2E2_2128 at 2533.454 kb on - strand, within Pf6N2E2_2128 at 2533.454 kb on - strand, within Pf6N2E2_2128 at 2533.545 kb on - strand at 2533.594 kb on + strand at 2533.595 kb on - strand at 2533.685 kb on + strand at 2533.685 kb on + strand at 2533.685 kb on + strand at 2533.686 kb on - strand at 2534.143 kb on - strand, within Pf6N2E2_2129 at 2534.143 kb on - strand, within Pf6N2E2_2129 at 2534.143 kb on - strand, within Pf6N2E2_2129 at 2534.167 kb on + strand, within Pf6N2E2_2129 at 2534.407 kb on + strand, within Pf6N2E2_2129 at 2534.499 kb on - strand at 2534.499 kb on - strand at 2534.501 kb on + strand at 2534.501 kb on + strand at 2534.501 kb on + strand at 2534.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Chloride 500 mM remove 2,531,894 + Pf6N2E2_2127 0.43 +1.3 2,531,894 + Pf6N2E2_2127 0.43 +0.1 2,531,895 - Pf6N2E2_2127 0.43 +1.1 2,531,895 - Pf6N2E2_2127 0.43 +1.1 2,532,146 + Pf6N2E2_2127 0.61 -1.5 2,532,147 - Pf6N2E2_2127 0.61 +0.2 2,532,350 + Pf6N2E2_2127 0.76 +0.8 2,532,350 + Pf6N2E2_2127 0.76 +0.3 2,532,350 + Pf6N2E2_2127 0.76 -0.9 2,532,443 + Pf6N2E2_2127 0.82 -0.1 2,532,486 - Pf6N2E2_2127 0.85 -0.2 2,532,623 + -0.0 2,532,790 + -0.7 2,532,790 + -0.9 2,532,791 - +0.4 2,532,791 - +1.5 2,532,845 - +1.6 2,532,979 + Pf6N2E2_2128 0.23 -1.5 2,532,979 + Pf6N2E2_2128 0.23 -0.3 2,532,979 + Pf6N2E2_2128 0.23 +0.1 2,533,090 + Pf6N2E2_2128 0.38 -3.0 2,533,090 + Pf6N2E2_2128 0.38 -0.4 2,533,090 + Pf6N2E2_2128 0.38 -1.4 2,533,091 - Pf6N2E2_2128 0.38 +0.5 2,533,212 + Pf6N2E2_2128 0.55 -1.9 2,533,212 + Pf6N2E2_2128 0.55 -1.1 2,533,213 - Pf6N2E2_2128 0.55 -1.6 2,533,453 + Pf6N2E2_2128 0.87 -1.3 2,533,454 - Pf6N2E2_2128 0.87 +0.1 2,533,454 - Pf6N2E2_2128 0.87 -0.7 2,533,545 - +0.1 2,533,594 + -3.7 2,533,595 - -3.4 2,533,685 + -3.1 2,533,685 + -4.5 2,533,685 + -2.9 2,533,686 - -3.1 2,534,143 - Pf6N2E2_2129 0.58 -3.1 2,534,143 - Pf6N2E2_2129 0.58 -4.8 2,534,143 - Pf6N2E2_2129 0.58 -4.1 2,534,167 + Pf6N2E2_2129 0.61 -3.9 2,534,407 + Pf6N2E2_2129 0.88 -2.8 2,534,499 - -2.3 2,534,499 - -3.0 2,534,501 + -2.9 2,534,501 + -3.3 2,534,501 + +0.4 2,534,502 - -1.5
Or see this region's nucleotide sequence