Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1370

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1368 and Pf6N2E2_1369 are separated by 87 nucleotidesPf6N2E2_1369 and Pf6N2E2_1370 are separated by 69 nucleotidesPf6N2E2_1370 and Pf6N2E2_1371 overlap by 21 nucleotidesPf6N2E2_1371 and Pf6N2E2_1372 are separated by 2 nucleotides Pf6N2E2_1368 - FIG067310: hypothetical protein, at 1,604,533 to 1,606,182 _1368 Pf6N2E2_1369 - 2,3-dihydroxy-2,3-dihydro-phenylpropionate dehydrogenase (EC 1.3.1.-), at 1,606,270 to 1,607,037 _1369 Pf6N2E2_1370 - Putative benzaldehyde dehydrogenase oxidoreductase protein (EC 1.2.1.28), at 1,607,107 to 1,608,579 _1370 Pf6N2E2_1371 - hypothetical protein, at 1,608,559 to 1,608,861 _1371 Pf6N2E2_1372 - sigma-54 dependent transcriptional regulator, at 1,608,864 to 1,610,639 _1372 Position (kb) 1607 1608 1609Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1606.126 kb on + strandat 1606.196 kb on + strandat 1606.202 kb on + strandat 1606.258 kb on - strandat 1606.277 kb on + strandat 1606.277 kb on + strandat 1606.278 kb on - strandat 1606.379 kb on + strand, within Pf6N2E2_1369at 1606.380 kb on - strand, within Pf6N2E2_1369at 1606.532 kb on + strand, within Pf6N2E2_1369at 1606.533 kb on - strand, within Pf6N2E2_1369at 1606.562 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.763 kb on + strand, within Pf6N2E2_1369at 1606.764 kb on - strand, within Pf6N2E2_1369at 1606.764 kb on - strand, within Pf6N2E2_1369at 1606.764 kb on - strand, within Pf6N2E2_1369at 1606.764 kb on - strand, within Pf6N2E2_1369at 1606.764 kb on - strand, within Pf6N2E2_1369at 1607.050 kb on + strandat 1607.051 kb on - strandat 1607.053 kb on + strandat 1607.054 kb on - strandat 1607.063 kb on + strandat 1607.096 kb on - strandat 1607.162 kb on + strandat 1607.162 kb on + strandat 1607.163 kb on - strandat 1607.163 kb on - strandat 1607.349 kb on - strand, within Pf6N2E2_1370at 1607.480 kb on + strand, within Pf6N2E2_1370at 1607.880 kb on + strand, within Pf6N2E2_1370at 1607.901 kb on + strand, within Pf6N2E2_1370at 1608.152 kb on + strand, within Pf6N2E2_1370at 1608.152 kb on + strand, within Pf6N2E2_1370at 1608.152 kb on + strand, within Pf6N2E2_1370at 1608.293 kb on + strand, within Pf6N2E2_1370at 1608.294 kb on - strand, within Pf6N2E2_1370at 1608.294 kb on - strand, within Pf6N2E2_1370at 1608.294 kb on - strand, within Pf6N2E2_1370at 1608.582 kb on - strandat 1608.631 kb on - strand, within Pf6N2E2_1371at 1608.696 kb on - strand, within Pf6N2E2_1371at 1608.810 kb on - strand, within Pf6N2E2_1371at 1608.816 kb on + strand, within Pf6N2E2_1371at 1608.817 kb on - strand, within Pf6N2E2_1371at 1608.859 kb on + strandat 1608.860 kb on - strandat 1608.860 kb on - strandat 1609.013 kb on + strandat 1609.014 kb on - strandat 1609.201 kb on + strand, within Pf6N2E2_1372at 1609.290 kb on + strand, within Pf6N2E2_1372at 1609.290 kb on + strand, within Pf6N2E2_1372at 1609.290 kb on + strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.291 kb on - strand, within Pf6N2E2_1372at 1609.347 kb on + strand, within Pf6N2E2_1372at 1609.348 kb on - strand, within Pf6N2E2_1372at 1609.389 kb on + strand, within Pf6N2E2_1372at 1609.531 kb on - strand, within Pf6N2E2_1372

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,606,126 + -0.9
1,606,196 + -0.0
1,606,202 + -0.1
1,606,258 - -0.6
1,606,277 + +1.1
1,606,277 + +1.3
1,606,278 - +0.2
1,606,379 + Pf6N2E2_1369 0.14 -1.1
1,606,380 - Pf6N2E2_1369 0.14 -0.2
1,606,532 + Pf6N2E2_1369 0.34 -0.1
1,606,533 - Pf6N2E2_1369 0.34 -0.8
1,606,562 + Pf6N2E2_1369 0.38 -0.5
1,606,763 + Pf6N2E2_1369 0.64 +0.5
1,606,763 + Pf6N2E2_1369 0.64 +2.1
1,606,763 + Pf6N2E2_1369 0.64 -0.5
1,606,763 + Pf6N2E2_1369 0.64 +0.6
1,606,763 + Pf6N2E2_1369 0.64 -0.6
1,606,763 + Pf6N2E2_1369 0.64 -1.1
1,606,763 + Pf6N2E2_1369 0.64 -2.9
1,606,764 - Pf6N2E2_1369 0.64 +0.2
1,606,764 - Pf6N2E2_1369 0.64 -1.6
1,606,764 - Pf6N2E2_1369 0.64 +0.1
1,606,764 - Pf6N2E2_1369 0.64 +0.1
1,606,764 - Pf6N2E2_1369 0.64 +0.4
1,607,050 + -1.5
1,607,051 - +0.8
1,607,053 + -0.6
1,607,054 - +0.6
1,607,063 + -0.2
1,607,096 - -0.4
1,607,162 + -0.4
1,607,162 + +0.6
1,607,163 - +0.1
1,607,163 - -0.2
1,607,349 - Pf6N2E2_1370 0.16 -1.6
1,607,480 + Pf6N2E2_1370 0.25 -0.4
1,607,880 + Pf6N2E2_1370 0.52 -0.7
1,607,901 + Pf6N2E2_1370 0.54 -0.9
1,608,152 + Pf6N2E2_1370 0.71 -0.8
1,608,152 + Pf6N2E2_1370 0.71 -2.0
1,608,152 + Pf6N2E2_1370 0.71 -0.1
1,608,293 + Pf6N2E2_1370 0.81 -0.6
1,608,294 - Pf6N2E2_1370 0.81 -1.7
1,608,294 - Pf6N2E2_1370 0.81 -0.6
1,608,294 - Pf6N2E2_1370 0.81 -1.3
1,608,582 - -1.0
1,608,631 - Pf6N2E2_1371 0.24 +1.0
1,608,696 - Pf6N2E2_1371 0.45 +0.1
1,608,810 - Pf6N2E2_1371 0.83 +2.0
1,608,816 + Pf6N2E2_1371 0.85 -0.2
1,608,817 - Pf6N2E2_1371 0.85 +1.4
1,608,859 + -0.8
1,608,860 - +0.6
1,608,860 - +0.2
1,609,013 + -0.9
1,609,014 - -0.0
1,609,201 + Pf6N2E2_1372 0.19 +2.1
1,609,290 + Pf6N2E2_1372 0.24 +0.4
1,609,290 + Pf6N2E2_1372 0.24 -0.9
1,609,290 + Pf6N2E2_1372 0.24 -0.0
1,609,291 - Pf6N2E2_1372 0.24 +0.6
1,609,291 - Pf6N2E2_1372 0.24 +0.7
1,609,291 - Pf6N2E2_1372 0.24 +0.3
1,609,291 - Pf6N2E2_1372 0.24 -0.4
1,609,291 - Pf6N2E2_1372 0.24 -0.0
1,609,291 - Pf6N2E2_1372 0.24 -0.0
1,609,347 + Pf6N2E2_1372 0.27 +0.5
1,609,348 - Pf6N2E2_1372 0.27 +0.6
1,609,389 + Pf6N2E2_1372 0.30 -0.0
1,609,531 - Pf6N2E2_1372 0.38 -1.6

Or see this region's nucleotide sequence