Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1301

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1300 and Pf6N2E2_1301 are separated by 157 nucleotidesPf6N2E2_1301 and Pf6N2E2_1302 are separated by 50 nucleotides Pf6N2E2_1300 - Cyclohexadienyl dehydratase (EC 4.2.1.51)(EC 4.2.1.91), at 1,535,128 to 1,535,919 _1300 Pf6N2E2_1301 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 1,536,077 to 1,537,096 _1301 Pf6N2E2_1302 - TRAP-type C4-dicarboxylate transport system, large permease component, at 1,537,147 to 1,538,427 _1302 Position (kb) 1536 1537 1538Strain fitness (log2 ratio) -1 0 1 2at 1535.078 kb on + strandat 1535.081 kb on + strandat 1535.081 kb on + strandat 1535.082 kb on - strandat 1535.082 kb on - strandat 1535.082 kb on - strandat 1535.139 kb on - strandat 1535.273 kb on - strand, within Pf6N2E2_1300at 1535.273 kb on - strand, within Pf6N2E2_1300at 1535.273 kb on - strand, within Pf6N2E2_1300at 1535.274 kb on + strand, within Pf6N2E2_1300at 1535.274 kb on + strand, within Pf6N2E2_1300at 1535.274 kb on + strand, within Pf6N2E2_1300at 1535.275 kb on - strand, within Pf6N2E2_1300at 1535.467 kb on + strand, within Pf6N2E2_1300at 1535.779 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.830 kb on + strand, within Pf6N2E2_1300at 1535.831 kb on - strand, within Pf6N2E2_1300at 1536.111 kb on + strandat 1536.112 kb on - strandat 1536.112 kb on - strandat 1536.405 kb on + strand, within Pf6N2E2_1301at 1536.405 kb on + strand, within Pf6N2E2_1301at 1536.406 kb on - strand, within Pf6N2E2_1301at 1536.421 kb on - strand, within Pf6N2E2_1301at 1536.492 kb on + strand, within Pf6N2E2_1301at 1536.492 kb on + strand, within Pf6N2E2_1301at 1536.619 kb on + strand, within Pf6N2E2_1301at 1536.619 kb on + strand, within Pf6N2E2_1301at 1536.619 kb on + strand, within Pf6N2E2_1301at 1536.619 kb on + strand, within Pf6N2E2_1301at 1536.620 kb on - strand, within Pf6N2E2_1301at 1536.620 kb on - strand, within Pf6N2E2_1301at 1536.778 kb on - strandat 1536.778 kb on - strand, within Pf6N2E2_1301at 1537.113 kb on + strandat 1537.113 kb on + strandat 1537.122 kb on - strandat 1537.634 kb on + strand, within Pf6N2E2_1302at 1537.634 kb on + strand, within Pf6N2E2_1302at 1537.635 kb on - strand, within Pf6N2E2_1302at 1537.635 kb on - strand, within Pf6N2E2_1302at 1537.856 kb on + strand, within Pf6N2E2_1302at 1537.856 kb on + strand, within Pf6N2E2_1302at 1537.856 kb on + strand, within Pf6N2E2_1302at 1537.856 kb on + strand, within Pf6N2E2_1302at 1537.856 kb on + strand, within Pf6N2E2_1302at 1537.857 kb on - strand, within Pf6N2E2_1302

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,535,078 + +0.7
1,535,081 + -1.3
1,535,081 + -0.9
1,535,082 - +1.4
1,535,082 - -0.3
1,535,082 - -1.3
1,535,139 - +1.1
1,535,273 - Pf6N2E2_1300 0.18 +0.2
1,535,273 - Pf6N2E2_1300 0.18 +0.8
1,535,273 - Pf6N2E2_1300 0.18 +1.8
1,535,274 + Pf6N2E2_1300 0.18 +0.4
1,535,274 + Pf6N2E2_1300 0.18 +0.5
1,535,274 + Pf6N2E2_1300 0.18 -1.1
1,535,275 - Pf6N2E2_1300 0.19 +1.6
1,535,467 + Pf6N2E2_1300 0.43 +1.3
1,535,779 + Pf6N2E2_1300 0.82 -0.4
1,535,830 + Pf6N2E2_1300 0.89 -0.0
1,535,830 + Pf6N2E2_1300 0.89 -0.0
1,535,830 + Pf6N2E2_1300 0.89 -0.1
1,535,830 + Pf6N2E2_1300 0.89 +0.4
1,535,830 + Pf6N2E2_1300 0.89 -0.5
1,535,830 + Pf6N2E2_1300 0.89 -0.2
1,535,830 + Pf6N2E2_1300 0.89 +0.7
1,535,831 - Pf6N2E2_1300 0.89 -0.6
1,536,111 + +1.5
1,536,112 - -1.6
1,536,112 - +0.7
1,536,405 + Pf6N2E2_1301 0.32 +1.0
1,536,405 + Pf6N2E2_1301 0.32 -0.5
1,536,406 - Pf6N2E2_1301 0.32 +0.8
1,536,421 - Pf6N2E2_1301 0.34 +0.7
1,536,492 + Pf6N2E2_1301 0.41 -0.4
1,536,492 + Pf6N2E2_1301 0.41 +0.7
1,536,619 + Pf6N2E2_1301 0.53 -0.0
1,536,619 + Pf6N2E2_1301 0.53 +0.7
1,536,619 + Pf6N2E2_1301 0.53 +0.8
1,536,619 + Pf6N2E2_1301 0.53 -0.0
1,536,620 - Pf6N2E2_1301 0.53 +0.8
1,536,620 - Pf6N2E2_1301 0.53 +1.2
1,536,778 - +1.6
1,536,778 - Pf6N2E2_1301 0.69 +0.4
1,537,113 + +0.5
1,537,113 + +0.4
1,537,122 - +1.9
1,537,634 + Pf6N2E2_1302 0.38 -1.2
1,537,634 + Pf6N2E2_1302 0.38 -1.2
1,537,635 - Pf6N2E2_1302 0.38 -0.2
1,537,635 - Pf6N2E2_1302 0.38 +0.1
1,537,856 + Pf6N2E2_1302 0.55 +1.4
1,537,856 + Pf6N2E2_1302 0.55 -1.3
1,537,856 + Pf6N2E2_1302 0.55 +0.6
1,537,856 + Pf6N2E2_1302 0.55 +0.1
1,537,856 + Pf6N2E2_1302 0.55 -0.8
1,537,857 - Pf6N2E2_1302 0.55 -0.0

Or see this region's nucleotide sequence