Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1027

Experiment: Chloride 500 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1026 and Pf6N2E2_1027 overlap by 4 nucleotidesPf6N2E2_1027 and Pf6N2E2_1028 are separated by 195 nucleotides Pf6N2E2_1026 - Rhodanese-related sulfurtransferase, at 1,199,480 to 1,201,063 _1026 Pf6N2E2_1027 - Cysteine dioxygenase (EC 1.13.11.20), at 1,201,060 to 1,201,695 _1027 Pf6N2E2_1028 - Transcriptional regulator, LysR family, at 1,201,891 to 1,202,796 _1028 Position (kb) 1201 1202Strain fitness (log2 ratio) -2 -1 0 1at 1200.219 kb on + strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.220 kb on - strand, within Pf6N2E2_1026at 1200.686 kb on - strand, within Pf6N2E2_1026at 1200.808 kb on - strand, within Pf6N2E2_1026at 1200.808 kb on - strand, within Pf6N2E2_1026at 1200.808 kb on - strand, within Pf6N2E2_1026at 1200.903 kb on + strand, within Pf6N2E2_1026at 1201.052 kb on + strandat 1201.053 kb on - strandat 1201.064 kb on - strandat 1201.157 kb on + strand, within Pf6N2E2_1027at 1201.481 kb on + strand, within Pf6N2E2_1027at 1201.481 kb on + strand, within Pf6N2E2_1027at 1201.481 kb on + strand, within Pf6N2E2_1027at 1201.482 kb on - strandat 1201.482 kb on - strand, within Pf6N2E2_1027at 1201.832 kb on + strandat 1201.864 kb on - strandat 1201.864 kb on - strandat 1201.864 kb on - strandat 1202.449 kb on + strand, within Pf6N2E2_1028at 1202.449 kb on + strand, within Pf6N2E2_1028at 1202.449 kb on + strand, within Pf6N2E2_1028

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Per-strain Table

Position Strand Gene LocusTag Fraction Chloride 500 mM
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1,200,219 + Pf6N2E2_1026 0.47 -0.6
1,200,220 - Pf6N2E2_1026 0.47 +0.6
1,200,220 - Pf6N2E2_1026 0.47 -0.4
1,200,220 - Pf6N2E2_1026 0.47 -0.6
1,200,220 - Pf6N2E2_1026 0.47 +0.0
1,200,220 - Pf6N2E2_1026 0.47 -0.3
1,200,220 - Pf6N2E2_1026 0.47 -0.5
1,200,220 - Pf6N2E2_1026 0.47 +0.4
1,200,686 - Pf6N2E2_1026 0.76 +1.0
1,200,808 - Pf6N2E2_1026 0.84 -0.4
1,200,808 - Pf6N2E2_1026 0.84 +0.8
1,200,808 - Pf6N2E2_1026 0.84 -0.1
1,200,903 + Pf6N2E2_1026 0.90 +0.2
1,201,052 + -1.4
1,201,053 - -1.0
1,201,064 - +0.2
1,201,157 + Pf6N2E2_1027 0.15 -0.3
1,201,481 + Pf6N2E2_1027 0.66 -1.4
1,201,481 + Pf6N2E2_1027 0.66 -0.2
1,201,481 + Pf6N2E2_1027 0.66 -0.8
1,201,482 - -0.6
1,201,482 - Pf6N2E2_1027 0.66 -0.8
1,201,832 + +0.3
1,201,864 - +0.2
1,201,864 - -0.3
1,201,864 - +0.7
1,202,449 + Pf6N2E2_1028 0.62 -1.8
1,202,449 + Pf6N2E2_1028 0.62 +0.2
1,202,449 + Pf6N2E2_1028 0.62 -0.0

Or see this region's nucleotide sequence