Strain Fitness in Pantoea sp. MT58 around IAI47_20655

Experiment: Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntIAI47_20650 and IAI47_20655 are separated by 9 nucleotidesIAI47_20655 and IAI47_20660 overlap by 14 nucleotides IAI47_20650: IAI47_20650 - polyprenyl synthetase family protein, at 379,733 to 380,641 _20650 IAI47_20655: IAI47_20655 - glycosyltransferase family 1 protein, at 380,651 to 381,946 _20655 IAI47_20660: IAI47_20660 - lycopene beta-cyclase CrtY, at 381,933 to 383,093 _20660 Position (kb) 380 381 382Strain fitness (log2 ratio) -2 -1 0 1 2 3at 379.715 kb on + strandat 379.715 kb on + strandat 379.716 kb on - strandat 379.716 kb on - strandat 379.720 kb on - strandat 379.720 kb on - strandat 379.720 kb on - strandat 379.824 kb on + strand, within IAI47_20650at 379.905 kb on + strand, within IAI47_20650at 379.906 kb on - strand, within IAI47_20650at 380.075 kb on + strand, within IAI47_20650at 380.076 kb on - strand, within IAI47_20650at 380.119 kb on + strand, within IAI47_20650at 380.202 kb on + strand, within IAI47_20650at 380.202 kb on + strand, within IAI47_20650at 380.203 kb on - strand, within IAI47_20650at 380.206 kb on + strand, within IAI47_20650at 380.206 kb on + strand, within IAI47_20650at 380.207 kb on - strand, within IAI47_20650at 380.207 kb on - strand, within IAI47_20650at 380.207 kb on - strand, within IAI47_20650at 380.296 kb on + strand, within IAI47_20650at 380.296 kb on + strand, within IAI47_20650at 380.296 kb on + strand, within IAI47_20650at 380.297 kb on - strand, within IAI47_20650at 380.297 kb on - strand, within IAI47_20650at 380.428 kb on + strand, within IAI47_20650at 380.428 kb on + strand, within IAI47_20650at 380.428 kb on + strand, within IAI47_20650at 380.476 kb on + strand, within IAI47_20650at 380.477 kb on - strand, within IAI47_20650at 380.582 kb on + strandat 380.639 kb on + strandat 380.640 kb on - strandat 380.640 kb on - strandat 380.661 kb on - strandat 380.661 kb on - strandat 380.684 kb on + strandat 380.684 kb on + strandat 380.685 kb on - strandat 380.686 kb on + strandat 380.713 kb on + strandat 380.714 kb on - strandat 380.714 kb on - strandat 380.724 kb on + strandat 380.746 kb on + strandat 380.746 kb on + strandat 380.747 kb on - strandat 380.747 kb on - strandat 380.747 kb on - strandat 380.923 kb on + strand, within IAI47_20655at 380.924 kb on - strand, within IAI47_20655at 380.924 kb on - strand, within IAI47_20655at 381.009 kb on + strand, within IAI47_20655at 381.010 kb on - strand, within IAI47_20655at 381.010 kb on - strand, within IAI47_20655at 381.107 kb on + strand, within IAI47_20655at 381.108 kb on - strand, within IAI47_20655at 381.108 kb on - strand, within IAI47_20655at 381.220 kb on - strand, within IAI47_20655at 381.278 kb on - strand, within IAI47_20655at 381.380 kb on + strand, within IAI47_20655at 381.381 kb on - strand, within IAI47_20655at 381.381 kb on - strand, within IAI47_20655at 381.381 kb on - strand, within IAI47_20655at 381.454 kb on + strand, within IAI47_20655at 381.496 kb on - strand, within IAI47_20655at 381.655 kb on + strand, within IAI47_20655at 381.758 kb on - strand, within IAI47_20655at 381.758 kb on - strand, within IAI47_20655at 381.758 kb on - strand, within IAI47_20655at 381.812 kb on + strand, within IAI47_20655at 381.812 kb on + strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.813 kb on - strand, within IAI47_20655at 381.919 kb on + strandat 381.919 kb on + strandat 381.919 kb on + strandat 381.919 kb on + strandat 381.919 kb on + strandat 381.920 kb on - strandat 381.920 kb on - strandat 381.920 kb on - strandat 381.932 kb on + strandat 381.932 kb on + strandat 381.932 kb on + strandat 381.933 kb on - strandat 381.933 kb on - strandat 381.933 kb on - strandat 381.933 kb on - strandat 381.933 kb on - strandat 381.933 kb on - strandat 381.950 kb on + strandat 381.951 kb on - strandat 381.951 kb on - strandat 381.951 kb on - strandat 381.951 kb on - strandat 382.030 kb on + strandat 382.030 kb on + strandat 382.031 kb on - strandat 382.316 kb on - strand, within IAI47_20660at 382.350 kb on + strand, within IAI47_20660at 382.350 kb on + strand, within IAI47_20660at 382.374 kb on - strand, within IAI47_20660at 382.489 kb on - strand, within IAI47_20660at 382.489 kb on - strand, within IAI47_20660at 382.512 kb on - strand, within IAI47_20660at 382.529 kb on + strand, within IAI47_20660at 382.530 kb on - strand, within IAI47_20660at 382.530 kb on - strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.536 kb on + strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.537 kb on - strand, within IAI47_20660at 382.538 kb on + strand, within IAI47_20660at 382.538 kb on + strand, within IAI47_20660at 382.538 kb on + strand, within IAI47_20660at 382.539 kb on - strand, within IAI47_20660at 382.539 kb on - strand, within IAI47_20660at 382.581 kb on - strand, within IAI47_20660at 382.590 kb on + strand, within IAI47_20660at 382.590 kb on + strand, within IAI47_20660at 382.591 kb on - strand, within IAI47_20660at 382.625 kb on - strand, within IAI47_20660at 382.625 kb on - strand, within IAI47_20660at 382.625 kb on - strand, within IAI47_20660at 382.656 kb on - strand, within IAI47_20660at 382.656 kb on - strand, within IAI47_20660at 382.700 kb on - strand, within IAI47_20660at 382.736 kb on + strand, within IAI47_20660at 382.736 kb on + strand, within IAI47_20660at 382.737 kb on - strand, within IAI47_20660at 382.746 kb on + strand, within IAI47_20660at 382.747 kb on - strand, within IAI47_20660at 382.803 kb on - strand, within IAI47_20660at 382.880 kb on - strand, within IAI47_20660at 382.928 kb on + strand, within IAI47_20660at 382.941 kb on + strand, within IAI47_20660

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=FW300 (pH7.4) with 1.0 mM Glucose with 10 mg/L CCCP; TreatmentDuration=0.5hrs; Outgrowth=LBkan50
remove
379,715 + +0.3
379,715 + +0.6
379,716 - +1.1
379,716 - +1.1
379,720 - -2.0
379,720 - -0.7
379,720 - -0.5
379,824 + IAI47_20650 0.10 +2.9
379,905 + IAI47_20650 0.19 +0.8
379,906 - IAI47_20650 0.19 +0.1
380,075 + IAI47_20650 0.38 +1.8
380,076 - IAI47_20650 0.38 +1.6
380,119 + IAI47_20650 0.42 +2.3
380,202 + IAI47_20650 0.52 +0.7
380,202 + IAI47_20650 0.52 +0.7
380,203 - IAI47_20650 0.52 +0.1
380,206 + IAI47_20650 0.52 +1.5
380,206 + IAI47_20650 0.52 -0.8
380,207 - IAI47_20650 0.52 +1.4
380,207 - IAI47_20650 0.52 -1.0
380,207 - IAI47_20650 0.52 +1.5
380,296 + IAI47_20650 0.62 +0.2
380,296 + IAI47_20650 0.62 +0.9
380,296 + IAI47_20650 0.62 +1.2
380,297 - IAI47_20650 0.62 -0.1
380,297 - IAI47_20650 0.62 -0.0
380,428 + IAI47_20650 0.76 +0.5
380,428 + IAI47_20650 0.76 -0.1
380,428 + IAI47_20650 0.76 +2.9
380,476 + IAI47_20650 0.82 +1.5
380,477 - IAI47_20650 0.82 +0.4
380,582 + +1.8
380,639 + -0.7
380,640 - +0.2
380,640 - +0.2
380,661 - -0.0
380,661 - -0.9
380,684 + -0.0
380,684 + +1.1
380,685 - +0.2
380,686 + +1.7
380,713 + +0.8
380,714 - +1.5
380,714 - +0.4
380,724 + +0.7
380,746 + +2.5
380,746 + +0.1
380,747 - -0.0
380,747 - -0.9
380,747 - -0.5
380,923 + IAI47_20655 0.21 +0.1
380,924 - IAI47_20655 0.21 -0.6
380,924 - IAI47_20655 0.21 +1.6
381,009 + IAI47_20655 0.28 +0.8
381,010 - IAI47_20655 0.28 +0.6
381,010 - IAI47_20655 0.28 -1.7
381,107 + IAI47_20655 0.35 -0.0
381,108 - IAI47_20655 0.35 +0.1
381,108 - IAI47_20655 0.35 -0.2
381,220 - IAI47_20655 0.44 -0.8
381,278 - IAI47_20655 0.48 +0.6
381,380 + IAI47_20655 0.56 +0.1
381,381 - IAI47_20655 0.56 -0.0
381,381 - IAI47_20655 0.56 -0.9
381,381 - IAI47_20655 0.56 +0.9
381,454 + IAI47_20655 0.62 +3.4
381,496 - IAI47_20655 0.65 +1.6
381,655 + IAI47_20655 0.77 +1.1
381,758 - IAI47_20655 0.85 -0.7
381,758 - IAI47_20655 0.85 -0.3
381,758 - IAI47_20655 0.85 +1.4
381,812 + IAI47_20655 0.90 +1.0
381,812 + IAI47_20655 0.90 +1.9
381,813 - IAI47_20655 0.90 +0.0
381,813 - IAI47_20655 0.90 +1.0
381,813 - IAI47_20655 0.90 +0.6
381,813 - IAI47_20655 0.90 -0.6
381,813 - IAI47_20655 0.90 +0.7
381,813 - IAI47_20655 0.90 -0.0
381,813 - IAI47_20655 0.90 +1.4
381,919 + +1.6
381,919 + -0.4
381,919 + +0.8
381,919 + +0.4
381,919 + +2.0
381,920 - +1.0
381,920 - +0.5
381,920 - +0.4
381,932 + +0.5
381,932 + +0.4
381,932 + +0.7
381,933 - +0.2
381,933 - +1.3
381,933 - +0.5
381,933 - +0.7
381,933 - +1.7
381,933 - +0.2
381,950 + -0.2
381,951 - +1.1
381,951 - -0.8
381,951 - -0.2
381,951 - +0.9
382,030 + +1.1
382,030 + +0.5
382,031 - -0.8
382,316 - IAI47_20660 0.33 +0.4
382,350 + IAI47_20660 0.36 +2.7
382,350 + IAI47_20660 0.36 -0.1
382,374 - IAI47_20660 0.38 +0.6
382,489 - IAI47_20660 0.48 -0.2
382,489 - IAI47_20660 0.48 -0.1
382,512 - IAI47_20660 0.50 -0.8
382,529 + IAI47_20660 0.51 -0.6
382,530 - IAI47_20660 0.51 -0.8
382,530 - IAI47_20660 0.51 -0.2
382,536 + IAI47_20660 0.52 +1.7
382,536 + IAI47_20660 0.52 +0.4
382,536 + IAI47_20660 0.52 -0.0
382,536 + IAI47_20660 0.52 -1.1
382,536 + IAI47_20660 0.52 +2.0
382,536 + IAI47_20660 0.52 +2.1
382,536 + IAI47_20660 0.52 -0.2
382,536 + IAI47_20660 0.52 -1.1
382,536 + IAI47_20660 0.52 +2.4
382,537 - IAI47_20660 0.52 -0.2
382,537 - IAI47_20660 0.52 +0.8
382,537 - IAI47_20660 0.52 +2.7
382,537 - IAI47_20660 0.52 +0.7
382,537 - IAI47_20660 0.52 -0.3
382,537 - IAI47_20660 0.52 +0.2
382,538 + IAI47_20660 0.52 +2.0
382,538 + IAI47_20660 0.52 +0.1
382,538 + IAI47_20660 0.52 +0.6
382,539 - IAI47_20660 0.52 +0.9
382,539 - IAI47_20660 0.52 -0.0
382,581 - IAI47_20660 0.56 +1.1
382,590 + IAI47_20660 0.57 +1.1
382,590 + IAI47_20660 0.57 -0.7
382,591 - IAI47_20660 0.57 -0.6
382,625 - IAI47_20660 0.60 +0.5
382,625 - IAI47_20660 0.60 -0.3
382,625 - IAI47_20660 0.60 +0.5
382,656 - IAI47_20660 0.62 -0.4
382,656 - IAI47_20660 0.62 +0.4
382,700 - IAI47_20660 0.66 -1.2
382,736 + IAI47_20660 0.69 +0.2
382,736 + IAI47_20660 0.69 -1.0
382,737 - IAI47_20660 0.69 +1.1
382,746 + IAI47_20660 0.70 -0.6
382,747 - IAI47_20660 0.70 +1.7
382,803 - IAI47_20660 0.75 +2.7
382,880 - IAI47_20660 0.82 -0.1
382,928 + IAI47_20660 0.86 -0.6
382,941 + IAI47_20660 0.87 +1.3

Or see this region's nucleotide sequence