Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03076

Experiment: PYE_noCalcium 4C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 4C survival rep1 28 days
3,224,543	+		CCNA_03074	0.52	+3.2
3,224,543	+		CCNA_03074	0.52	-0.1
3,224,543	+		CCNA_03074	0.52	-0.3
3,224,543	+		CCNA_03074	0.52	+0.1
3,224,543	+		CCNA_03074	0.52	+0.1
3,224,543	+		CCNA_03074	0.52	-0.8
3,224,543	+		CCNA_03074	0.52	-2.0
3,224,551	-				-0.1
3,224,551	-		CCNA_03074	0.53	-2.5
3,224,551	-		CCNA_03074	0.53	-1.2
3,224,593	-		CCNA_03074	0.59	-2.4
3,224,606	-		CCNA_03074	0.61	-2.2
3,224,641	-		CCNA_03074	0.66	+3.8
3,224,646	+		CCNA_03074	0.66	+0.3
3,224,646	+		CCNA_03074	0.66	-1.2
3,224,646	+		CCNA_03074	0.66	-0.1
3,224,654	-		CCNA_03074	0.67	-0.8
3,224,706	-		CCNA_03074	0.75	+0.0
3,224,715	+		CCNA_03074	0.76	+1.7
3,224,723	-		CCNA_03074	0.77	-0.6
3,224,754	+		CCNA_03074	0.81	-0.3
3,224,754	+		CCNA_03074	0.81	-3.3
3,224,762	-		CCNA_03074	0.82	-0.2
3,224,769	+		CCNA_03074	0.83	+0.7
3,224,775	+		CCNA_03074	0.84	-0.4
3,224,799	+		CCNA_03074	0.88	+0.9
3,224,809	+		CCNA_03074	0.89	-1.9
3,224,810	+		CCNA_03074	0.89	-2.9
3,224,818	-				+2.2
3,224,818	-				-2.1
3,224,818	-				-2.2
3,224,819	+				+2.2
3,224,876	-				-0.2
3,224,881	-				-0.6
3,224,901	+				-0.9
3,224,903	+				+1.2
3,224,903	+				-1.6
3,224,909	-				-2.4
3,224,972	+		CCNA_03075	0.16	-1.7
3,224,972	+		CCNA_03075	0.16	-0.2
3,225,071	+		CCNA_03075	0.34	-2.0
3,225,079	-		CCNA_03075	0.35	-0.8
3,225,084	-		CCNA_03075	0.36	+0.3
3,225,101	+		CCNA_03075	0.39	+0.7
3,225,101	+		CCNA_03075	0.39	-0.1
3,225,106	+		CCNA_03075	0.40	-0.1
3,225,138	-		CCNA_03075	0.46	-1.7
3,225,140	+		CCNA_03075	0.46	-2.6
3,225,143	-		CCNA_03075	0.47	-2.4
3,225,174	+		CCNA_03075	0.52	-1.7
3,225,178	+		CCNA_03075	0.53	-0.7
3,225,180	-		CCNA_03075	0.53	-1.1
3,225,206	+		CCNA_03075	0.58	-0.0
3,225,222	+		CCNA_03075	0.61	-2.0
3,225,235	-		CCNA_03075	0.63	-0.5
3,225,292	-		CCNA_03075	0.74	-3.0
3,225,306	-		CCNA_03075	0.76	-0.1
3,225,306	-		CCNA_03075	0.76	-0.6
3,225,306	-		CCNA_03075	0.76	-0.3
3,225,313	-		CCNA_03075	0.78	-0.5
3,225,320	+		CCNA_03075	0.79	-1.8
3,225,320	+		CCNA_03075	0.79	-0.1
3,225,375	+		CCNA_03075	0.89	-0.1
3,225,444	+				-0.2
3,225,454	+				-1.6
3,225,491	+				-0.6
3,225,496	+				+2.8
3,225,499	-				-0.2
3,225,499	-				+0.1
3,225,499	-				-2.4
3,225,514	+				-0.5
3,225,514	+				-1.2
3,225,514	+				-1.3
3,225,522	-				+0.5
3,225,522	-				-0.8
3,225,554	-				+0.2
3,225,583	+				+0.1
3,225,590	+				+0.1
3,225,590	+				+0.2
3,225,598	-				-0.7
3,225,598	-				+2.7
3,225,613	+				-3.3
3,225,613	+				-0.3
3,225,613	+				+1.1
3,225,657	-				+1.4
3,225,725	-				-0.4
3,225,727	+				-0.4
3,225,727	+				+0.3
3,225,727	+				+0.4
3,225,727	+				-0.6
3,225,735	-				-3.1
3,225,735	-				-0.0
3,225,735	-				-0.1
3,225,735	-				-0.7
3,225,762	-		CCNA_03076	0.10	-0.9
3,225,762	-		CCNA_03076	0.10	-2.2
3,225,784	+		CCNA_03076	0.11	-1.3
3,225,785	+		CCNA_03076	0.11	+0.9
3,225,785	+		CCNA_03076	0.11	+0.7
3,225,785	+		CCNA_03076	0.11	-1.3
3,225,791	+		CCNA_03076	0.12	+0.1
3,225,791	+		CCNA_03076	0.12	-0.3
3,225,792	+		CCNA_03076	0.12	-0.7
3,225,792	-		CCNA_03076	0.12	-0.6
3,225,793	-		CCNA_03076	0.12	+1.2
3,225,793	-		CCNA_03076	0.12	-2.5
3,225,803	+		CCNA_03076	0.12	-1.2
3,225,806	-		CCNA_03076	0.12	+0.1
3,225,810	-		CCNA_03076	0.12	-1.1
3,225,811	-		CCNA_03076	0.12	-2.1
3,225,811	-		CCNA_03076	0.12	+0.2
3,225,811	-		CCNA_03076	0.12	+3.8
3,225,833	+		CCNA_03076	0.13	-1.2
3,225,833	+		CCNA_03076	0.13	+0.2
3,225,833	+		CCNA_03076	0.13	-0.8
3,225,833	+		CCNA_03076	0.13	+0.7
3,225,833	+		CCNA_03076	0.13	-0.4
3,225,834	+		CCNA_03076	0.14	+0.2
3,225,834	+		CCNA_03076	0.14	-0.9
3,225,834	-		CCNA_03076	0.14	-1.1
3,225,838	+		CCNA_03076	0.14	-0.8
3,225,841	-		CCNA_03076	0.14	-1.6
3,225,841	-		CCNA_03076	0.14	+0.2
3,225,841	-		CCNA_03076	0.14	-0.9
3,225,852	+		CCNA_03076	0.14	-1.8
3,225,871	+		CCNA_03076	0.15	+0.7
3,225,879	-		CCNA_03076	0.16	-0.3
3,225,911	+		CCNA_03076	0.17	+0.3
3,225,911	+		CCNA_03076	0.17	-0.5
3,225,919	-		CCNA_03076	0.17	-1.5
3,225,954	+		CCNA_03076	0.19	+0.3
3,225,956	+		CCNA_03076	0.19	+0.6
3,225,961	+		CCNA_03076	0.19	-0.3
3,226,043	+		CCNA_03076	0.23	-0.8
3,226,043	+		CCNA_03076	0.23	+0.2
3,226,074	+		CCNA_03076	0.24	-0.6
3,226,103	-		CCNA_03076	0.25	-0.6
3,226,105	+		CCNA_03076	0.26	-0.3
3,226,106	+		CCNA_03076	0.26	+0.7
3,226,106	+		CCNA_03076	0.26	+0.2
3,226,111	+		CCNA_03076	0.26	+1.2
3,226,112	+		CCNA_03076	0.26	+0.4
3,226,121	+		CCNA_03076	0.26	+0.2
3,226,121	+		CCNA_03076	0.26	-1.9
3,226,121	+		CCNA_03076	0.26	-1.2
3,226,121	+		CCNA_03076	0.26	-1.9
3,226,121	+		CCNA_03076	0.26	+0.1
3,226,129	-		CCNA_03076	0.27	-1.2
3,226,129	-		CCNA_03076	0.27	+0.7
3,226,129	-		CCNA_03076	0.27	+0.1
3,226,134	+		CCNA_03076	0.27	+1.3
3,226,152	+		CCNA_03076	0.28	+0.2
3,226,153	-		CCNA_03076	0.28	+0.2
3,226,214	+		CCNA_03076	0.30	-1.3
3,226,261	-		CCNA_03076	0.32	+1.2
3,226,303	+		CCNA_03076	0.34	+0.2
3,226,303	-		CCNA_03076	0.34	-0.3
3,226,311	-		CCNA_03076	0.35	-1.1
3,226,323	-		CCNA_03076	0.35	-0.6
3,226,323	-		CCNA_03076	0.35	-0.5
3,226,366	+		CCNA_03076	0.37	-0.3
3,226,375	+				-1.5
3,226,375	+		CCNA_03076	0.38	-0.4
3,226,381	+		CCNA_03076	0.38	-1.1
3,226,389	-		CCNA_03076	0.38	-0.6
3,226,413	+		CCNA_03076	0.39	-0.3
3,226,413	+		CCNA_03076	0.39	-2.1
3,226,415	-		CCNA_03076	0.39	-1.3
3,226,421	-		CCNA_03076	0.40	-1.8
3,226,421	-		CCNA_03076	0.40	+2.2
3,226,427	-		CCNA_03076	0.40	-1.2
3,226,495	+		CCNA_03076	0.43	+0.5
3,226,509	+		CCNA_03076	0.44	+0.5
3,226,509	+		CCNA_03076	0.44	-2.5
3,226,517	-		CCNA_03076	0.44	-1.7
3,226,517	-		CCNA_03076	0.44	-2.4
3,226,517	-		CCNA_03076	0.44	-0.6
3,226,526	+		CCNA_03076	0.44	-1.4
3,226,555	-		CCNA_03076	0.46	-1.0
3,226,637	-		CCNA_03076	0.49	+1.7
3,226,662	+		CCNA_03076	0.50	+0.9
3,226,663	-		CCNA_03076	0.50	+0.2
3,226,665	-		CCNA_03076	0.50	-0.1
3,226,665	-		CCNA_03076	0.50	+5.0
3,226,676	+		CCNA_03076	0.51	-1.1
3,226,685	-		CCNA_03076	0.51	+0.2
3,226,703	+		CCNA_03076	0.52	-0.8
3,226,703	+		CCNA_03076	0.52	+0.1
3,226,705	+		CCNA_03076	0.52	-0.4
3,226,705	+				+0.5
3,226,705	+		CCNA_03076	0.52	+1.2
3,226,705	+		CCNA_03076	0.52	-3.2
3,226,705	+		CCNA_03076	0.52	+0.3
3,226,713	-		CCNA_03076	0.53	-0.9
3,226,713	-		CCNA_03076	0.53	-0.7
3,226,713	-		CCNA_03076	0.53	+1.0
3,226,713	-		CCNA_03076	0.53	-1.7
3,226,713	-		CCNA_03076	0.53	+1.5
3,226,713	-		CCNA_03076	0.53	+0.4
3,226,749	+		CCNA_03076	0.54	+0.0
3,226,749	+		CCNA_03076	0.54	-0.9
3,226,749	+		CCNA_03076	0.54	-0.4
3,226,754	+		CCNA_03076	0.54	+0.4
3,226,757	-		CCNA_03076	0.55	+1.0
3,226,759	+		CCNA_03076	0.55	-1.7
3,226,760	+		CCNA_03076	0.55	-0.8
3,226,761	+		CCNA_03076	0.55	-1.2
3,226,766	+		CCNA_03076	0.55	-1.2
3,226,821	-		CCNA_03076	0.57	-1.9
3,226,823	+		CCNA_03076	0.57	-0.7
3,226,826	-		CCNA_03076	0.58	+1.7
3,226,888	+		CCNA_03076	0.60	+0.4
3,226,930	-		CCNA_03076	0.62	-0.1
3,226,939	+		CCNA_03076	0.63	-0.6
3,226,950	+		CCNA_03076	0.63	-0.2
3,226,958	-		CCNA_03076	0.63	+0.1
3,226,994	+		CCNA_03076	0.65	-3.1
3,227,010	-		CCNA_03076	0.66	-1.9
3,227,017	+		CCNA_03076	0.66	-1.2
3,227,025	-		CCNA_03076	0.66	-0.3
3,227,026	-		CCNA_03076	0.66	+0.2
3,227,064	+		CCNA_03076	0.68	-0.2
3,227,064	+		CCNA_03076	0.68	-0.4
3,227,074	+		CCNA_03076	0.69	-1.7
3,227,082	-				+0.9
3,227,112	+		CCNA_03076	0.70	+0.1
3,227,120	-		CCNA_03076	0.71	-2.3
3,227,122	+		CCNA_03076	0.71	-0.5
3,227,133	+		CCNA_03076	0.71	-0.3
3,227,167	+		CCNA_03076	0.73	-1.3
3,227,180	-		CCNA_03076	0.73	+0.2
3,227,192	+		CCNA_03076	0.74	-0.4
3,227,192	+		CCNA_03076	0.74	-2.0
3,227,192	+		CCNA_03076	0.74	-0.5
3,227,192	+		CCNA_03076	0.74	-0.8
3,227,192	+		CCNA_03076	0.74	+0.2
3,227,200	-		CCNA_03076	0.74	-1.9
3,227,200	-		CCNA_03076	0.74	-0.9
3,227,200	-		CCNA_03076	0.74	-1.9
3,227,200	-		CCNA_03076	0.74	-0.3
3,227,200	-		CCNA_03076	0.74	-1.8
3,227,200	-		CCNA_03076	0.74	-1.6
3,227,200	-		CCNA_03076	0.74	-2.6
3,227,230	-		CCNA_03076	0.76	-0.7
3,227,234	-		CCNA_03076	0.76	-0.8
3,227,276	-		CCNA_03076	0.78	+2.8
3,227,276	-		CCNA_03076	0.78	-0.3
3,227,280	-		CCNA_03076	0.78	-0.6
3,227,315	+		CCNA_03076	0.79	+0.4
3,227,322	-		CCNA_03076	0.80	-1.7
3,227,328	-		CCNA_03076	0.80	-0.0
3,227,328	-		CCNA_03076	0.80	-1.5
3,227,356	+		CCNA_03076	0.81	+2.1
3,227,356	+		CCNA_03076	0.81	+0.4
3,227,382	+		CCNA_03076	0.82	-1.4
3,227,390	-		CCNA_03076	0.83	+0.9
3,227,397	+		CCNA_03076	0.83	+1.4
3,227,442	+		CCNA_03076	0.85	+0.1
3,227,452	+		CCNA_03076	0.85	+1.0
3,227,453	+		CCNA_03076	0.85	-1.2
3,227,455	+		CCNA_03076	0.86	-2.7
3,227,471	-		CCNA_03076	0.86	-2.2
3,227,501	+		CCNA_03076	0.88	-0.6
3,227,542	+		CCNA_03076	0.89	+0.0
3,227,542	+		CCNA_03076	0.89	-0.4
3,227,542	+		CCNA_03076	0.89	-1.7
3,227,542	+		CCNA_03076	0.89	-1.2
3,227,542	+		CCNA_03076	0.89	+0.7
3,227,542	+		CCNA_03076	0.89	+1.7
3,227,542	+		CCNA_03076	0.89	-0.8
3,227,542	+		CCNA_03076	0.89	-0.6
3,227,550	-		CCNA_03076	0.90	+1.7
3,227,550	-		CCNA_03076	0.90	+2.7
3,227,550	-		CCNA_03076	0.90	-0.8
3,227,550	-				-0.1
3,227,550	-		CCNA_03076	0.90	+2.6
3,227,561	+				-0.1
3,227,640	-				+2.6
3,227,655	-				-0.7
3,227,696	+				-1.3
3,227,701	+				+0.7
3,227,701	+				+1.7
3,227,701	+				+1.5
3,227,701	+				+0.9
3,227,704	-				+2.4
3,227,709	-				-0.6
3,227,709	-				+0.6
3,227,709	-				-2.2
3,227,713	+				+0.1
3,227,721	-				-1.9
3,227,721	-				+0.4
3,227,734	+				+0.5
3,227,734	+				+0.6
3,227,749	+				+0.4
3,227,749	+				+0.8
3,227,756	-				-2.7
3,227,757	-				-1.0
3,227,759	+				+0.5
3,227,776	+				+1.0
3,227,782	+				+0.4
3,227,783	+				+2.9
3,227,783	+				-0.4
3,227,822	+				+0.2
3,227,842	+				+0.7
3,227,842	+				-0.3
3,227,947	+				-1.0
3,227,949	-				-0.8
3,227,949	-				+0.3
3,227,949	-				+0.3
3,227,972	+				+0.3
3,227,972	+				+0.3
3,228,047	+		CCNA_03077	0.48	+0.8
3,228,047	+		CCNA_03077	0.48	+0.2
3,228,047	+		CCNA_03077	0.48	+2.2
3,228,047	+		CCNA_03077	0.48	-2.3
3,228,055	-		CCNA_03077	0.52	-1.7
3,228,057	+		CCNA_03077	0.53	-0.4
3,228,057	+		CCNA_03077	0.53	-0.5
3,228,101	-		CCNA_03077	0.77	-0.2
3,228,121	-		CCNA_03077	0.88	+1.3
3,228,129	-				-0.4
3,228,238	-		CCNA_03078	0.82	-1.8
3,228,238	-		CCNA_03078	0.82	+1.5
3,228,270	+				-3.4
3,228,270	+				-0.6
3,228,278	-				-1.0
3,228,280	+				-1.7
3,228,313	+				+0.0
3,228,318	+				-0.1
3,228,318	+				+1.8
3,228,328	-		CCNA_03079	0.10	-0.2
3,228,370	-		CCNA_03079	0.23	+1.0
3,228,370	-		CCNA_03079	0.23	+1.0
3,228,398	+		CCNA_03079	0.31	+0.5
3,228,398	+		CCNA_03079	0.31	+0.6
3,228,430	-		CCNA_03079	0.40	+0.5
3,228,495	-		CCNA_03079	0.60	+0.9
3,228,534	-		CCNA_03079	0.71	+0.2
3,228,551	+		CCNA_03079	0.76	-0.6
3,228,559	-		CCNA_03079	0.79	-0.1
3,228,575	+		CCNA_03079	0.84	-0.5
3,228,575	+		CCNA_03079	0.84	-1.0
3,228,575	+		CCNA_03079	0.84	-1.1
3,228,575	+		CCNA_03079	0.84	-0.6
3,228,583	-				-0.4
3,228,589	+				-2.9
3,228,589	+				-2.1