Strain Fitness in Caulobacter crescentus NA1000 around CCNA_03066

Experiment: PYE_noCalcium 4C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 4C survival rep1 28 days
3,216,351	-				+2.3
3,216,376	+				-0.7
3,216,384	-				+0.6
3,216,392	+				+0.1
3,216,397	+				-2.3
3,216,405	+				-1.9
3,216,409	-				-1.3
3,216,418	-				+1.1
3,216,418	-				+1.7
3,216,430	+				-0.9
3,216,438	-				+0.6
3,216,449	+		CCNA_03064	0.12	+2.3
3,216,481	-		CCNA_03064	0.21	-0.1
3,216,499	-		CCNA_03064	0.26	+0.7
3,216,509	-		CCNA_03064	0.29	-0.6
3,216,550	-				-1.2
3,216,606	-		CCNA_03064	0.56	+0.1
3,216,606	-		CCNA_03064	0.56	+0.8
3,216,606	-		CCNA_03064	0.56	-1.3
3,216,611	-		CCNA_03064	0.57	+0.0
3,216,634	-		CCNA_03064	0.63	+0.0
3,216,647	-		CCNA_03064	0.67	+0.4
3,216,711	-		CCNA_03064	0.85	+0.5
3,216,712	-		CCNA_03064	0.85	+1.0
3,216,732	-				+0.6
3,216,732	-				+0.3
3,216,771	-				-0.4
3,216,842	+				-0.2
3,216,872	+				-0.9
3,216,880	-				-0.4
3,216,880	-				-0.7
3,216,920	-				-0.7
3,216,926	-				-1.3
3,216,926	-				-1.4
3,216,928	+				-0.6
3,216,977	-		CCNA_03065	0.10	-3.8
3,216,986	-		CCNA_03065	0.13	-3.4
3,217,023	+		CCNA_03065	0.22	+0.8
3,217,023	+		CCNA_03065	0.22	-0.8
3,217,028	+		CCNA_03065	0.24	-0.5
3,217,031	-		CCNA_03065	0.25	-2.4
3,217,031	-		CCNA_03065	0.25	-1.5
3,217,094	+		CCNA_03065	0.41	-0.3
3,217,104	+		CCNA_03065	0.44	-0.2
3,217,116	+		CCNA_03065	0.47	-0.1
3,217,133	+		CCNA_03065	0.52	-2.6
3,217,136	-		CCNA_03065	0.53	-0.7
3,217,140	-		CCNA_03065	0.54	-0.1
3,217,140	-		CCNA_03065	0.54	-3.1
3,217,165	+		CCNA_03065	0.60	-1.2
3,217,175	+		CCNA_03065	0.63	-1.0
3,217,190	-		CCNA_03065	0.67	-2.3
3,217,221	+		CCNA_03065	0.75	-1.1
3,217,221	+		CCNA_03065	0.75	-1.0
3,217,221	+		CCNA_03065	0.75	-2.9
3,217,221	+		CCNA_03065	0.75	-0.7
3,217,221	+		CCNA_03065	0.75	-2.5
3,217,221	+		CCNA_03065	0.75	-2.9
3,217,221	+		CCNA_03065	0.75	-0.3
3,217,229	-		CCNA_03065	0.77	+1.3
3,217,229	-		CCNA_03065	0.77	-2.3
3,217,229	-		CCNA_03065	0.77	-1.6
3,217,229	-		CCNA_03065	0.77	+0.7
3,217,229	-		CCNA_03065	0.77	-1.8
3,217,253	+		CCNA_03065	0.84	-0.4
3,217,255	-		CCNA_03065	0.84	-2.2
3,217,277	+				-1.9
3,217,277	+				+0.1
3,217,277	+				+0.0
3,217,285	-				-2.4
3,217,285	-				-2.6
3,217,287	+				-0.4
3,217,297	+				-1.6
3,217,297	+				-1.0
3,217,297	+				-0.1
3,217,297	+				-0.0
3,217,297	+				-1.9
3,217,305	-				-1.4
3,217,305	-				-1.4
3,217,305	-				-3.0
3,217,305	-				+0.3
3,217,305	-				+0.7
3,217,305	-				-1.3
3,217,305	-				+0.4
3,217,351	+				+0.2
3,217,351	+				-1.0
3,217,351	+				-4.2
3,217,351	+				-0.1
3,217,353	+				-2.6
3,217,353	+				+0.3
3,217,353	+				+0.7
3,217,359	-				-1.3
3,217,359	-				-0.9
3,217,359	-				-1.0
3,217,359	-				+0.5
3,217,361	-				+1.5
3,217,361	-				+1.0
3,217,361	-				+1.0
3,217,388	+				+1.1
3,217,426	+				-1.7
3,217,472	+				-1.4
3,217,478	+				+0.2
3,217,484	+				-1.2
3,217,485	+				+0.3
3,217,485	+				-0.9
3,217,485	+				-2.8
3,217,493	-				-0.7
3,217,493	-				-2.2
3,217,493	-				+0.4
3,217,493	-				-0.5
3,217,502	+				+1.7
3,217,502	+				-0.1
3,217,502	+				+1.3
3,217,502	+				-0.8
3,217,502	+				+0.7
3,217,510	-				-1.4
3,217,510	-				-1.0
3,217,520	+				-1.8
3,217,547	-		CCNA_03066	0.10	-0.1
3,217,564	+		CCNA_03066	0.11	+0.1
3,217,569	+		CCNA_03066	0.11	-2.5
3,217,574	+		CCNA_03066	0.12	-0.4
3,217,588	-		CCNA_03066	0.12	-1.9
3,217,599	+		CCNA_03066	0.13	-2.3
3,217,612	+		CCNA_03066	0.14	+0.2
3,217,624	+		CCNA_03066	0.14	-0.8
3,217,625	-		CCNA_03066	0.14	-2.0
3,217,637	-		CCNA_03066	0.15	+0.5
3,217,637	-		CCNA_03066	0.15	+0.6
3,217,678	-		CCNA_03066	0.17	-0.1
3,217,719	+		CCNA_03066	0.19	-2.9
3,217,722	-		CCNA_03066	0.19	+0.7
3,217,776	-		CCNA_03066	0.21	-2.3
3,217,799	-		CCNA_03066	0.22	-3.4
3,217,818	-		CCNA_03066	0.23	-1.8
3,217,823	-		CCNA_03066	0.24	-0.0
3,217,909	+		CCNA_03066	0.28	-1.5
3,217,935	-		CCNA_03066	0.29	-1.5
3,217,935	-		CCNA_03066	0.29	-0.1
3,217,935	-		CCNA_03066	0.29	+0.5
3,217,961	+		CCNA_03066	0.30	-0.1
3,217,962	+		CCNA_03066	0.30	-1.1
3,217,962	+		CCNA_03066	0.30	-0.8
3,217,970	-		CCNA_03066	0.31	-2.4
3,217,970	-		CCNA_03066	0.31	+0.4
3,217,970	-		CCNA_03066	0.31	+0.2
3,217,970	-		CCNA_03066	0.31	-1.1
3,217,975	-		CCNA_03066	0.31	+2.3
3,217,975	-		CCNA_03066	0.31	+3.3
3,217,980	-		CCNA_03066	0.31	-0.8
3,217,995	+		CCNA_03066	0.32	-1.4
3,218,003	-		CCNA_03066	0.32	-1.3
3,218,003	-		CCNA_03066	0.32	-2.1
3,218,017	+		CCNA_03066	0.33	-2.5
3,218,040	+		CCNA_03066	0.34	-1.7
3,218,076	-		CCNA_03066	0.36	-0.7
3,218,160	+				-0.9
3,218,167	+		CCNA_03066	0.40	-1.9
3,218,168	-		CCNA_03066	0.40	+1.1
3,218,168	-		CCNA_03066	0.40	-0.1
3,218,168	-		CCNA_03066	0.40	+1.3
3,218,185	+		CCNA_03066	0.41	-0.9
3,218,187	-		CCNA_03066	0.41	-0.5
3,218,193	-		CCNA_03066	0.41	-0.3
3,218,193	-		CCNA_03066	0.41	+2.3
3,218,208	-		CCNA_03066	0.42	-1.7
3,218,260	+		CCNA_03066	0.45	-2.4
3,218,277	+		CCNA_03066	0.45	-1.4
3,218,284	-		CCNA_03066	0.46	+0.5
3,218,285	-		CCNA_03066	0.46	+2.3
3,218,300	+		CCNA_03066	0.46	-0.9
3,218,300	+		CCNA_03066	0.46	-2.0
3,218,301	+		CCNA_03066	0.46	+0.7
3,218,301	+		CCNA_03066	0.46	-0.1
3,218,301	+		CCNA_03066	0.46	+0.8
3,218,302	-		CCNA_03066	0.47	+1.6
3,218,323	+		CCNA_03066	0.48	+2.3
3,218,336	-		CCNA_03066	0.48	-0.3
3,218,377	+		CCNA_03066	0.50	-0.9
3,218,385	-		CCNA_03066	0.51	+0.3
3,218,385	-		CCNA_03066	0.51	-2.5
3,218,400	+		CCNA_03066	0.51	-0.8
3,218,400	+		CCNA_03066	0.51	-0.5
3,218,400	+		CCNA_03066	0.51	-1.7
3,218,400	+		CCNA_03066	0.51	-2.6
3,218,408	-		CCNA_03066	0.52	-0.1
3,218,408	-		CCNA_03066	0.52	-2.2
3,218,446	+		CCNA_03066	0.53	+0.3
3,218,454	-		CCNA_03066	0.54	-1.1
3,218,454	-		CCNA_03066	0.54	-1.6
3,218,482	-		CCNA_03066	0.55	-0.9
3,218,511	-		CCNA_03066	0.57	-0.2
3,218,513	+		CCNA_03066	0.57	-0.5
3,218,513	+		CCNA_03066	0.57	-0.6
3,218,513	+		CCNA_03066	0.57	+0.7
3,218,548	-		CCNA_03066	0.58	-2.3
3,218,554	-		CCNA_03066	0.59	-1.7
3,218,585	+		CCNA_03066	0.60	-2.2
3,218,591	+		CCNA_03066	0.60	+0.4
3,218,596	+		CCNA_03066	0.61	-2.8
3,218,613	+		CCNA_03066	0.61	-1.7
3,218,640	+		CCNA_03066	0.63	-2.1
3,218,670	+		CCNA_03066	0.64	-2.1
3,218,672	+		CCNA_03066	0.64	-1.1
3,218,810	+		CCNA_03066	0.71	+0.6
3,218,810	+		CCNA_03066	0.71	-0.5
3,218,810	+		CCNA_03066	0.71	-2.3
3,218,818	-		CCNA_03066	0.71	+2.3
3,218,829	+		CCNA_03066	0.72	+0.4
3,218,842	+		CCNA_03066	0.72	+0.7
3,218,850	-		CCNA_03066	0.73	-1.2
3,218,874	-		CCNA_03066	0.74	-1.6
3,218,904	+		CCNA_03066	0.75	-2.6
3,218,904	+		CCNA_03066	0.75	+0.7
3,218,994	-		CCNA_03066	0.80	-1.7
3,219,021	-		CCNA_03066	0.81	+1.9
3,219,048	+		CCNA_03066	0.82	-0.1
3,219,098	+		CCNA_03066	0.85	-0.4
3,219,098	+		CCNA_03066	0.85	-0.5
3,219,098	+		CCNA_03066	0.85	+0.4
3,219,098	+		CCNA_03066	0.85	-2.4
3,219,098	+		CCNA_03066	0.85	-1.5
3,219,106	-		CCNA_03066	0.85	-0.3
3,219,174	-		CCNA_03066	0.88	-2.9
3,219,174	-		CCNA_03066	0.88	-0.8
3,219,222	-				-0.2
3,219,237	-				+0.6
3,219,237	-				+1.7
3,219,264	+				-0.4
3,219,270	-				+0.3
3,219,272	-				-1.4
3,219,278	+				-1.2
3,219,278	+				-0.9
3,219,281	-				-0.3
3,219,286	-				+1.7
3,219,304	-				-0.4
3,219,366	+				+2.3
3,219,374	-				-0.7
3,219,374	-				-0.1
3,219,376	+				+0.3
3,219,376	+				-0.5
3,219,376	+				-1.6
3,219,384	-				-0.3
3,219,393	+				+0.9
3,219,415	+				+0.5
3,219,452	+				-0.2
3,219,452	+				-2.0
3,219,454	+				+2.7
3,219,454	+				-1.3
3,219,460	-				+1.1
3,219,460	-				+0.0
3,219,472	-				-1.3
3,219,550	+				+1.2
3,219,552	-				+0.3
3,219,568	-				-2.2
3,219,568	-				+0.7
3,219,573	-				+0.4
3,219,573	-				-0.1
3,219,609	-		CCNA_03067	0.12	+0.4
3,219,628	-		CCNA_03067	0.17	+0.3
3,219,628	-		CCNA_03067	0.17	+0.3
3,219,628	-		CCNA_03067	0.17	+0.1
3,219,651	+		CCNA_03067	0.22	-2.5
3,219,659	+		CCNA_03067	0.24	-2.1
3,219,659	+		CCNA_03067	0.24	-0.5
3,219,702	-		CCNA_03067	0.35	-1.3
3,219,707	-		CCNA_03067	0.36	+0.7
3,219,708	+		CCNA_03067	0.37	+1.5
3,219,716	-		CCNA_03067	0.39	+1.5
3,219,743	+		CCNA_03067	0.45	-0.4
3,219,750	-		CCNA_03067	0.47	+1.4
3,219,751	-		CCNA_03067	0.47	-0.3
3,219,777	+		CCNA_03067	0.54	-0.1
3,219,792	-		CCNA_03067	0.58	+0.5
3,219,806	-		CCNA_03067	0.61	+0.9
3,219,825	+		CCNA_03067	0.66	-0.3
3,219,834	-		CCNA_03067	0.68	+0.2
3,219,834	-		CCNA_03067	0.68	+2.0
3,219,844	-		CCNA_03067	0.71	-0.1
3,219,876	-		CCNA_03067	0.79	+0.5
3,219,882	+		CCNA_03067	0.80	-0.3
3,219,884	+		CCNA_03067	0.81	+0.1
3,219,890	-		CCNA_03067	0.82	+0.7
3,220,031	+				+0.3
3,220,031	+				+0.4
3,220,031	+				-0.5
3,220,058	+				-0.6
3,220,077	+				-2.3
3,220,077	+				-1.3
3,220,085	-				+0.1
3,220,128	-				+0.4
3,220,135	+		CCNA_03068	0.10	+0.3
3,220,203	-		CCNA_03068	0.21	-1.3
3,220,205	-		CCNA_03068	0.21	+0.9
3,220,226	-		CCNA_03068	0.24	+1.8
3,220,284	+		CCNA_03068	0.34	-1.6
3,220,292	-		CCNA_03068	0.35	-2.4
3,220,298	-		CCNA_03068	0.36	+3.3
3,220,307	+		CCNA_03068	0.37	-0.6
3,220,315	-		CCNA_03068	0.39	-3.1
3,220,359	-		CCNA_03068	0.46	+2.0
3,220,361	+		CCNA_03068	0.46	-0.5
3,220,366	+		CCNA_03068	0.47	-0.6
3,220,368	-		CCNA_03068	0.47	+2.1
3,220,376	+		CCNA_03068	0.48	-0.7
3,220,381	+		CCNA_03068	0.49	+1.7
3,220,384	-		CCNA_03068	0.50	+0.6
3,220,384	-		CCNA_03068	0.50	+0.5
3,220,386	+		CCNA_03068	0.50	-2.1
3,220,386	+		CCNA_03068	0.50	-1.6
3,220,389	-		CCNA_03068	0.50	-0.6
3,220,394	-		CCNA_03068	0.51	+0.1