Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01128

Experiment: PYE_noCalcium 4C survival rep1 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_03890 and CCNA_01128 are separated by 65 nucleotidesCCNA_01128 and CCNA_01129 are separated by 147 nucleotidesCCNA_01129 and CCNA_01130 are separated by 14 nucleotides CCNA_03890: CCNA_03890 - hypothetical protein, at 1,231,609 to 1,232,988 _03890 CCNA_01128: CCNA_01128 - hypothetical protein, at 1,233,054 to 1,233,356 _01128 CCNA_01129: CCNA_01129 - flagellar biosynthesis protein FliQ, at 1,233,504 to 1,233,770 _01129 CCNA_01130: CCNA_01130 - flagellar biosynthesis protein FliR, at 1,233,785 to 1,234,540 _01130 Position (kb) 1233 1234Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1232.059 kb on + strand, within CCNA_03890at 1232.066 kb on + strand, within CCNA_03890at 1232.076 kb on + strand, within CCNA_03890at 1232.078 kb on + strand, within CCNA_03890at 1232.079 kb on - strand, within CCNA_03890at 1232.083 kb on + strand, within CCNA_03890at 1232.084 kb on - strand, within CCNA_03890at 1232.084 kb on - strand, within CCNA_03890at 1232.098 kb on + strand, within CCNA_03890at 1232.100 kb on + strand, within CCNA_03890at 1232.119 kb on + strand, within CCNA_03890at 1232.124 kb on + strand, within CCNA_03890at 1232.209 kb on + strand, within CCNA_03890at 1232.214 kb on + strand, within CCNA_03890at 1232.218 kb on + strand, within CCNA_03890at 1232.220 kb on + strand, within CCNA_03890at 1232.227 kb on - strand, within CCNA_03890at 1232.254 kb on + strand, within CCNA_03890at 1232.260 kb on + strand, within CCNA_03890at 1232.262 kb on - strand, within CCNA_03890at 1232.267 kb on + strand, within CCNA_03890at 1232.268 kb on - strand, within CCNA_03890at 1232.268 kb on - strand, within CCNA_03890at 1232.279 kb on + strand, within CCNA_03890at 1232.320 kb on + strand, within CCNA_03890at 1232.359 kb on + strand, within CCNA_03890at 1232.364 kb on + strand, within CCNA_03890at 1232.367 kb on - strand, within CCNA_03890at 1232.383 kb on + strand, within CCNA_03890at 1232.391 kb on - strand, within CCNA_03890at 1232.458 kb on - strand, within CCNA_03890at 1232.480 kb on - strand, within CCNA_03890at 1232.498 kb on + strandat 1232.500 kb on - strand, within CCNA_03890at 1232.523 kb on + strand, within CCNA_03890at 1232.541 kb on + strand, within CCNA_03890at 1232.549 kb on - strand, within CCNA_03890at 1232.579 kb on + strand, within CCNA_03890at 1232.593 kb on + strand, within CCNA_03890at 1232.599 kb on + strand, within CCNA_03890at 1232.600 kb on - strand, within CCNA_03890at 1232.614 kb on + strand, within CCNA_03890at 1232.615 kb on + strand, within CCNA_03890at 1232.629 kb on - strand, within CCNA_03890at 1232.706 kb on - strand, within CCNA_03890at 1232.719 kb on + strand, within CCNA_03890at 1232.719 kb on + strand, within CCNA_03890at 1232.734 kb on + strand, within CCNA_03890at 1232.835 kb on + strand, within CCNA_03890at 1232.868 kb on + strandat 1232.874 kb on + strandat 1232.874 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.884 kb on + strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.892 kb on - strandat 1232.909 kb on + strandat 1232.909 kb on + strandat 1232.953 kb on + strandat 1232.963 kb on + strandat 1232.963 kb on + strandat 1232.971 kb on - strandat 1232.971 kb on - strandat 1232.971 kb on - strandat 1232.971 kb on - strandat 1232.971 kb on - strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.973 kb on + strandat 1232.981 kb on - strandat 1232.981 kb on - strandat 1232.981 kb on - strandat 1232.995 kb on + strandat 1232.998 kb on + strandat 1233.010 kb on + strandat 1233.033 kb on + strandat 1233.033 kb on + strandat 1233.038 kb on + strandat 1233.043 kb on + strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.046 kb on - strandat 1233.051 kb on - strandat 1233.053 kb on - strandat 1233.074 kb on + strandat 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.099 kb on + strand, within CCNA_01128at 1233.100 kb on + strand, within CCNA_01128at 1233.107 kb on - strand, within CCNA_01128at 1233.110 kb on + strand, within CCNA_01128at 1233.118 kb on - strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.125 kb on + strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.133 kb on - strand, within CCNA_01128at 1233.139 kb on - strand, within CCNA_01128at 1233.162 kb on + strand, within CCNA_01128at 1233.162 kb on + strand, within CCNA_01128at 1233.170 kb on - strand, within CCNA_01128at 1233.170 kb on - strand, within CCNA_01128at 1233.170 kb on - strand, within CCNA_01128at 1233.180 kb on - strand, within CCNA_01128at 1233.192 kb on + strand, within CCNA_01128at 1233.200 kb on + strand, within CCNA_01128at 1233.226 kb on + strand, within CCNA_01128at 1233.226 kb on + strand, within CCNA_01128at 1233.234 kb on - strand, within CCNA_01128at 1233.246 kb on - strand, within CCNA_01128at 1233.247 kb on + strand, within CCNA_01128at 1233.251 kb on - strandat 1233.257 kb on + strand, within CCNA_01128at 1233.265 kb on - strand, within CCNA_01128at 1233.268 kb on + strand, within CCNA_01128at 1233.272 kb on + strand, within CCNA_01128at 1233.272 kb on + strand, within CCNA_01128at 1233.279 kb on + strand, within CCNA_01128at 1233.280 kb on - strand, within CCNA_01128at 1233.280 kb on - strand, within CCNA_01128at 1233.336 kb on + strandat 1233.355 kb on + strandat 1233.362 kb on + strandat 1233.370 kb on - strandat 1233.372 kb on + strandat 1233.372 kb on + strandat 1233.372 kb on + strandat 1233.380 kb on - strandat 1233.385 kb on - strandat 1233.508 kb on - strandat 1233.550 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.556 kb on + strand, within CCNA_01129at 1233.558 kb on + strand, within CCNA_01129at 1233.558 kb on + strand, within CCNA_01129at 1233.564 kb on - strand, within CCNA_01129at 1233.612 kb on + strand, within CCNA_01129at 1233.617 kb on + strand, within CCNA_01129at 1233.625 kb on + strand, within CCNA_01129at 1233.653 kb on + strand, within CCNA_01129at 1233.653 kb on + strand, within CCNA_01129at 1233.661 kb on - strand, within CCNA_01129at 1233.781 kb on - strandat 1233.811 kb on + strandat 1233.819 kb on - strandat 1233.824 kb on + strandat 1233.841 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.853 kb on + strandat 1233.861 kb on - strand, within CCNA_01130at 1233.883 kb on + strand, within CCNA_01130at 1233.927 kb on - strand, within CCNA_01130at 1233.933 kb on + strand, within CCNA_01130at 1233.947 kb on + strand, within CCNA_01130at 1233.952 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.963 kb on + strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.971 kb on - strand, within CCNA_01130at 1233.976 kb on - strand, within CCNA_01130at 1233.977 kb on + strand, within CCNA_01130at 1234.005 kb on + strand, within CCNA_01130at 1234.013 kb on + strand, within CCNA_01130at 1234.021 kb on - strand, within CCNA_01130at 1234.021 kb on - strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.051 kb on + strand, within CCNA_01130at 1234.107 kb on + strand, within CCNA_01130at 1234.119 kb on + strand, within CCNA_01130at 1234.125 kb on - strand, within CCNA_01130at 1234.130 kb on - strand, within CCNA_01130at 1234.205 kb on - strand, within CCNA_01130at 1234.279 kb on - strand, within CCNA_01130at 1234.279 kb on - strand, within CCNA_01130at 1234.290 kb on + strand, within CCNA_01130at 1234.315 kb on + strand, within CCNA_01130at 1234.317 kb on + strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130at 1234.325 kb on - strand, within CCNA_01130

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep1 28 days
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1,232,059 + CCNA_03890 0.33 +0.5
1,232,066 + CCNA_03890 0.33 +0.5
1,232,076 + CCNA_03890 0.34 +0.4
1,232,078 + CCNA_03890 0.34 +1.4
1,232,079 - CCNA_03890 0.34 -0.9
1,232,083 + CCNA_03890 0.34 +0.0
1,232,084 - CCNA_03890 0.34 -0.9
1,232,084 - CCNA_03890 0.34 -0.3
1,232,098 + CCNA_03890 0.35 +0.5
1,232,100 + CCNA_03890 0.36 +0.6
1,232,119 + CCNA_03890 0.37 +1.0
1,232,124 + CCNA_03890 0.37 +0.3
1,232,209 + CCNA_03890 0.43 -0.5
1,232,214 + CCNA_03890 0.44 -1.0
1,232,218 + CCNA_03890 0.44 +0.4
1,232,220 + CCNA_03890 0.44 -2.3
1,232,227 - CCNA_03890 0.45 -1.1
1,232,254 + CCNA_03890 0.47 -2.9
1,232,260 + CCNA_03890 0.47 -0.6
1,232,262 - CCNA_03890 0.47 +0.3
1,232,267 + CCNA_03890 0.48 +0.3
1,232,268 - CCNA_03890 0.48 -1.2
1,232,268 - CCNA_03890 0.48 -2.1
1,232,279 + CCNA_03890 0.49 -2.3
1,232,320 + CCNA_03890 0.52 -0.9
1,232,359 + CCNA_03890 0.54 -0.2
1,232,364 + CCNA_03890 0.55 -0.3
1,232,367 - CCNA_03890 0.55 +2.3
1,232,383 + CCNA_03890 0.56 -0.7
1,232,391 - CCNA_03890 0.57 +0.7
1,232,458 - CCNA_03890 0.62 -1.4
1,232,480 - CCNA_03890 0.63 -0.7
1,232,498 + +1.3
1,232,500 - CCNA_03890 0.65 -0.3
1,232,523 + CCNA_03890 0.66 -1.0
1,232,541 + CCNA_03890 0.68 -0.2
1,232,549 - CCNA_03890 0.68 -0.2
1,232,579 + CCNA_03890 0.70 +0.1
1,232,593 + CCNA_03890 0.71 +0.0
1,232,599 + CCNA_03890 0.72 -0.0
1,232,600 - CCNA_03890 0.72 -2.1
1,232,614 + CCNA_03890 0.73 +0.1
1,232,615 + CCNA_03890 0.73 +1.3
1,232,629 - CCNA_03890 0.74 -0.6
1,232,706 - CCNA_03890 0.79 +0.1
1,232,719 + CCNA_03890 0.80 +1.3
1,232,719 + CCNA_03890 0.80 -1.9
1,232,734 + CCNA_03890 0.82 +0.4
1,232,835 + CCNA_03890 0.89 -2.2
1,232,868 + -0.4
1,232,874 + -2.8
1,232,874 + -1.2
1,232,884 + +0.6
1,232,884 + -1.1
1,232,884 + +0.3
1,232,884 + +1.4
1,232,884 + +0.9
1,232,884 + +1.4
1,232,884 + -0.6
1,232,884 + +0.9
1,232,884 + -0.7
1,232,884 + -0.4
1,232,892 - -1.7
1,232,892 - -1.4
1,232,892 - -0.5
1,232,892 - -2.8
1,232,892 - -0.1
1,232,892 - -1.0
1,232,892 - +0.7
1,232,909 + +0.4
1,232,909 + -0.5
1,232,953 + -0.6
1,232,963 + -1.4
1,232,963 + +0.9
1,232,971 - +2.3
1,232,971 - -1.1
1,232,971 - -0.7
1,232,971 - -2.1
1,232,971 - -1.3
1,232,973 + -0.4
1,232,973 + -0.1
1,232,973 + +1.3
1,232,973 + +1.0
1,232,973 + +0.2
1,232,981 - -0.6
1,232,981 - +0.8
1,232,981 - +1.1
1,232,995 + -0.3
1,232,998 + -1.2
1,233,010 + -1.8
1,233,033 + -2.6
1,233,033 + +0.7
1,233,038 + +0.5
1,233,043 + -3.3
1,233,046 - -1.1
1,233,046 - -0.7
1,233,046 - +0.4
1,233,046 - -1.2
1,233,051 - +0.6
1,233,053 - -2.5
1,233,074 + +0.9
1,233,099 + CCNA_01128 0.15 -0.2
1,233,099 + CCNA_01128 0.15 +0.2
1,233,099 + CCNA_01128 0.15 +1.1
1,233,099 + CCNA_01128 0.15 +1.2
1,233,099 + CCNA_01128 0.15 -0.3
1,233,099 + CCNA_01128 0.15 +1.0
1,233,100 + CCNA_01128 0.15 +0.4
1,233,107 - CCNA_01128 0.17 +0.4
1,233,110 + CCNA_01128 0.18 +1.7
1,233,118 - CCNA_01128 0.21 +0.2
1,233,125 + CCNA_01128 0.23 +0.4
1,233,125 + CCNA_01128 0.23 +1.1
1,233,125 + CCNA_01128 0.23 +2.1
1,233,133 - CCNA_01128 0.26 +0.1
1,233,133 - CCNA_01128 0.26 +0.0
1,233,133 - CCNA_01128 0.26 +0.3
1,233,133 - CCNA_01128 0.26 -1.3
1,233,133 - CCNA_01128 0.26 -3.1
1,233,139 - CCNA_01128 0.28 -2.0
1,233,162 + CCNA_01128 0.36 +0.4
1,233,162 + CCNA_01128 0.36 +0.1
1,233,170 - CCNA_01128 0.38 -1.8
1,233,170 - CCNA_01128 0.38 +1.3
1,233,170 - CCNA_01128 0.38 -0.2
1,233,180 - CCNA_01128 0.42 +2.3
1,233,192 + CCNA_01128 0.46 +1.1
1,233,200 + CCNA_01128 0.48 +1.1
1,233,226 + CCNA_01128 0.57 +0.8
1,233,226 + CCNA_01128 0.57 +0.8
1,233,234 - CCNA_01128 0.59 +0.3
1,233,246 - CCNA_01128 0.63 -2.2
1,233,247 + CCNA_01128 0.64 -0.2
1,233,251 - -2.1
1,233,257 + CCNA_01128 0.67 +1.5
1,233,265 - CCNA_01128 0.70 -2.7
1,233,268 + CCNA_01128 0.71 +0.8
1,233,272 + CCNA_01128 0.72 +1.0
1,233,272 + CCNA_01128 0.72 +0.7
1,233,279 + CCNA_01128 0.74 +0.5
1,233,280 - CCNA_01128 0.75 +0.9
1,233,280 - CCNA_01128 0.75 +1.3
1,233,336 + +1.0
1,233,355 + -0.2
1,233,362 + -0.9
1,233,370 - +0.1
1,233,372 + +0.7
1,233,372 + +1.1
1,233,372 + -0.0
1,233,380 - -0.8
1,233,385 - -1.0
1,233,508 - -1.3
1,233,550 + CCNA_01129 0.17 +0.8
1,233,556 + CCNA_01129 0.19 +3.3
1,233,556 + CCNA_01129 0.19 -2.8
1,233,556 + CCNA_01129 0.19 -1.2
1,233,556 + CCNA_01129 0.19 -2.6
1,233,556 + CCNA_01129 0.19 +1.3
1,233,558 + CCNA_01129 0.20 -1.6
1,233,558 + CCNA_01129 0.20 +0.4
1,233,564 - CCNA_01129 0.22 -0.6
1,233,612 + CCNA_01129 0.40 +2.3
1,233,617 + CCNA_01129 0.42 -3.2
1,233,625 + CCNA_01129 0.45 +2.3
1,233,653 + CCNA_01129 0.56 -3.3
1,233,653 + CCNA_01129 0.56 -1.8
1,233,661 - CCNA_01129 0.59 +2.3
1,233,781 - +2.7
1,233,811 + -0.6
1,233,819 - -0.3
1,233,824 + +0.3
1,233,841 + +0.3
1,233,853 + -1.1
1,233,853 + -2.1
1,233,853 + -2.4
1,233,853 + -0.6
1,233,861 - CCNA_01130 0.10 +1.3
1,233,883 + CCNA_01130 0.13 -3.4
1,233,927 - CCNA_01130 0.19 +0.7
1,233,933 + CCNA_01130 0.20 -1.4
1,233,947 + CCNA_01130 0.21 -0.1
1,233,952 + CCNA_01130 0.22 +0.4
1,233,963 + CCNA_01130 0.24 +0.1
1,233,963 + CCNA_01130 0.24 -1.7
1,233,963 + CCNA_01130 0.24 -3.9
1,233,963 + CCNA_01130 0.24 -1.4
1,233,963 + CCNA_01130 0.24 -4.8
1,233,963 + CCNA_01130 0.24 -1.3
1,233,963 + CCNA_01130 0.24 -2.2
1,233,963 + CCNA_01130 0.24 +1.3
1,233,963 + CCNA_01130 0.24 +2.3
1,233,963 + CCNA_01130 0.24 -1.4
1,233,963 + CCNA_01130 0.24 -2.9
1,233,963 + CCNA_01130 0.24 -2.7
1,233,963 + CCNA_01130 0.24 -1.6
1,233,963 + CCNA_01130 0.24 -0.1
1,233,971 - CCNA_01130 0.25 +2.3
1,233,971 - CCNA_01130 0.25 +0.3
1,233,971 - CCNA_01130 0.25 +0.3
1,233,971 - CCNA_01130 0.25 -0.3
1,233,976 - CCNA_01130 0.25 -1.2
1,233,977 + CCNA_01130 0.25 -0.3
1,234,005 + CCNA_01130 0.29 -0.7
1,234,013 + CCNA_01130 0.30 -2.1
1,234,021 - CCNA_01130 0.31 +1.3
1,234,021 - CCNA_01130 0.31 -2.3
1,234,051 + CCNA_01130 0.35 -1.7
1,234,051 + CCNA_01130 0.35 +2.3
1,234,051 + CCNA_01130 0.35 -1.8
1,234,107 + CCNA_01130 0.43 -0.9
1,234,119 + CCNA_01130 0.44 -3.4
1,234,125 - CCNA_01130 0.45 +2.3
1,234,130 - CCNA_01130 0.46 -1.6
1,234,205 - CCNA_01130 0.56 +0.3
1,234,279 - CCNA_01130 0.65 -2.3
1,234,279 - CCNA_01130 0.65 -1.3
1,234,290 + CCNA_01130 0.67 -2.9
1,234,315 + CCNA_01130 0.70 +2.3
1,234,317 + CCNA_01130 0.70 -2.1
1,234,325 - CCNA_01130 0.71 -2.6
1,234,325 - CCNA_01130 0.71 +0.7
1,234,325 - CCNA_01130 0.71 -0.9

Or see this region's nucleotide sequence