Experiment: PYE_noCalcium 4C survival rep1 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00876 and CCNA_00877 are separated by 31 nucleotides CCNA_00877 and CCNA_00878 are separated by 272 nucleotides CCNA_00878 and CCNA_00879 are separated by 156 nucleotides
CCNA_00876: CCNA_00876 - 7,8-dihydro-8-oxoguanine-triphosphatase, at 953,903 to 954,307
_00876
CCNA_00877: CCNA_00877 - hypothetical protein, at 954,339 to 954,947
_00877
CCNA_00878: CCNA_00878 - ATP-dependent RNA helicase, at 955,220 to 956,650
_00878
CCNA_00879: CCNA_00879 - PAS-family sensor histidine kinase, at 956,807 to 959,071
_00879
Position (kb) 955
956
957 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 954.242 kb on + strand, within CCNA_00876 at 954.266 kb on + strand, within CCNA_00876 at 954.279 kb on - strand at 954.302 kb on + strand at 954.304 kb on - strand at 954.304 kb on - strand at 954.335 kb on - strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.337 kb on + strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.345 kb on - strand at 954.362 kb on + strand at 954.365 kb on - strand at 954.367 kb on + strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.370 kb on - strand at 954.447 kb on - strand, within CCNA_00877 at 954.447 kb on - strand, within CCNA_00877 at 954.497 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.580 kb on + strand, within CCNA_00877 at 954.588 kb on - strand, within CCNA_00877 at 954.594 kb on - strand, within CCNA_00877 at 954.609 kb on - strand, within CCNA_00877 at 954.663 kb on - strand, within CCNA_00877 at 954.690 kb on - strand, within CCNA_00877 at 954.695 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.698 kb on - strand, within CCNA_00877 at 954.705 kb on - strand, within CCNA_00877 at 954.707 kb on + strand, within CCNA_00877 at 954.708 kb on - strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.715 kb on + strand, within CCNA_00877 at 954.723 kb on - strand, within CCNA_00877 at 954.736 kb on + strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.744 kb on - strand, within CCNA_00877 at 954.798 kb on + strand, within CCNA_00877 at 954.809 kb on + strand at 954.817 kb on - strand, within CCNA_00877 at 954.862 kb on + strand, within CCNA_00877 at 954.867 kb on + strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.870 kb on - strand, within CCNA_00877 at 954.893 kb on + strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.901 kb on - strand at 954.906 kb on - strand at 954.911 kb on + strand at 954.919 kb on - strand at 954.919 kb on - strand at 954.942 kb on + strand at 954.950 kb on - strand at 954.950 kb on - strand at 954.950 kb on - strand at 954.965 kb on - strand at 955.069 kb on - strand at 955.084 kb on + strand at 955.097 kb on - strand at 955.190 kb on + strand at 955.198 kb on - strand at 955.207 kb on + strand at 955.212 kb on + strand at 955.356 kb on + strand at 955.967 kb on + strand, within CCNA_00878 at 956.351 kb on - strand, within CCNA_00878 at 956.394 kb on - strand, within CCNA_00878 at 956.403 kb on + strand, within CCNA_00878 at 956.418 kb on + strand, within CCNA_00878 at 956.418 kb on + strand, within CCNA_00878 at 956.418 kb on + strand, within CCNA_00878 at 956.421 kb on - strand, within CCNA_00878 at 956.426 kb on - strand, within CCNA_00878 at 956.460 kb on + strand, within CCNA_00878 at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.529 kb on + strand at 956.537 kb on - strand at 956.537 kb on - strand at 956.537 kb on - strand at 956.537 kb on - strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.539 kb on + strand at 956.543 kb on - strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.547 kb on - strand at 956.569 kb on + strand at 956.622 kb on - strand at 956.622 kb on - strand at 956.750 kb on + strand at 956.883 kb on - strand at 956.892 kb on + strand at 956.892 kb on + strand at 956.893 kb on + strand at 956.900 kb on - strand at 956.900 kb on - strand at 956.923 kb on - strand at 956.952 kb on + strand at 956.981 kb on + strand at 956.989 kb on - strand at 956.989 kb on - strand at 956.994 kb on - strand at 957.010 kb on + strand at 957.055 kb on - strand, within CCNA_00879 at 957.094 kb on + strand, within CCNA_00879 at 957.094 kb on + strand, within CCNA_00879 at 957.102 kb on - strand, within CCNA_00879 at 957.117 kb on - strand, within CCNA_00879 at 957.126 kb on - strand, within CCNA_00879 at 957.170 kb on + strand, within CCNA_00879 at 957.170 kb on + strand, within CCNA_00879 at 957.180 kb on - strand, within CCNA_00879 at 957.218 kb on + strand, within CCNA_00879 at 957.223 kb on + strand, within CCNA_00879 at 957.223 kb on + strand, within CCNA_00879 at 957.226 kb on - strand, within CCNA_00879 at 957.226 kb on - strand, within CCNA_00879 at 957.226 kb on - strand, within CCNA_00879 at 957.234 kb on + strand, within CCNA_00879 at 957.236 kb on - strand, within CCNA_00879 at 957.246 kb on - strand, within CCNA_00879 at 957.301 kb on + strand, within CCNA_00879 at 957.309 kb on - strand, within CCNA_00879 at 957.320 kb on - strand, within CCNA_00879 at 957.329 kb on + strand, within CCNA_00879 at 957.348 kb on - strand, within CCNA_00879 at 957.351 kb on + strand, within CCNA_00879 at 957.406 kb on + strand, within CCNA_00879 at 957.414 kb on - strand, within CCNA_00879 at 957.415 kb on - strand, within CCNA_00879 at 957.431 kb on + strand, within CCNA_00879 at 957.434 kb on - strand, within CCNA_00879 at 957.439 kb on - strand, within CCNA_00879 at 957.492 kb on - strand, within CCNA_00879 at 957.554 kb on + strand, within CCNA_00879 at 957.559 kb on + strand, within CCNA_00879 at 957.611 kb on + strand, within CCNA_00879
Per-strain Table
Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep1 28 days remove 954,242 + CCNA_00876 0.84 +1.1 954,266 + CCNA_00876 0.90 +0.4 954,279 - -0.9 954,302 + +0.3 954,304 - +1.3 954,304 - -0.7 954,335 - +0.9 954,337 + +2.3 954,337 + +0.7 954,337 + -2.3 954,337 + -0.2 954,337 + +2.3 954,337 + -0.1 954,337 + -2.2 954,337 + -0.3 954,345 - -1.5 954,345 - -0.1 954,345 - -1.1 954,345 - -2.3 954,345 - -1.1 954,345 - +1.3 954,345 - +1.3 954,362 + +0.4 954,365 - -0.9 954,367 + -0.8 954,370 - -1.4 954,370 - +0.6 954,370 - +0.4 954,370 - -0.5 954,370 - -1.2 954,447 - CCNA_00877 0.18 -1.3 954,447 - CCNA_00877 0.18 -3.1 954,497 + CCNA_00877 0.26 -0.9 954,580 + CCNA_00877 0.40 -0.6 954,580 + CCNA_00877 0.40 +0.4 954,580 + CCNA_00877 0.40 -1.4 954,588 - CCNA_00877 0.41 -0.5 954,594 - CCNA_00877 0.42 +2.0 954,609 - CCNA_00877 0.44 -1.4 954,663 - CCNA_00877 0.53 -0.1 954,690 - CCNA_00877 0.58 +1.6 954,695 - CCNA_00877 0.58 -1.6 954,698 - CCNA_00877 0.59 -2.5 954,698 - CCNA_00877 0.59 -1.4 954,698 - CCNA_00877 0.59 +0.3 954,705 - CCNA_00877 0.60 +0.5 954,707 + CCNA_00877 0.60 -0.5 954,708 - CCNA_00877 0.61 -0.9 954,715 + CCNA_00877 0.62 -1.1 954,715 + CCNA_00877 0.62 +0.5 954,715 + CCNA_00877 0.62 -0.9 954,715 + CCNA_00877 0.62 -2.5 954,723 - CCNA_00877 0.63 -2.1 954,736 + CCNA_00877 0.65 -0.9 954,744 - CCNA_00877 0.67 +0.6 954,744 - CCNA_00877 0.67 +3.8 954,798 + CCNA_00877 0.75 -0.5 954,809 + -0.7 954,817 - CCNA_00877 0.78 +0.5 954,862 + CCNA_00877 0.86 -1.3 954,867 + CCNA_00877 0.87 -1.5 954,870 - CCNA_00877 0.87 +2.1 954,870 - CCNA_00877 0.87 -0.1 954,870 - CCNA_00877 0.87 -0.6 954,893 + -1.3 954,901 - +0.4 954,901 - -1.3 954,901 - +0.8 954,906 - -0.5 954,911 + -0.5 954,919 - +1.5 954,919 - +3.8 954,942 + -0.5 954,950 - -1.3 954,950 - +0.1 954,950 - -0.9 954,965 - -2.5 955,069 - -1.1 955,084 + +1.8 955,097 - -2.8 955,190 + -1.1 955,198 - -3.4 955,207 + -0.1 955,212 + +0.2 955,356 + -0.9 955,967 + CCNA_00878 0.52 -0.3 956,351 - CCNA_00878 0.79 -0.3 956,394 - CCNA_00878 0.82 -3.0 956,403 + CCNA_00878 0.83 -1.1 956,418 + CCNA_00878 0.84 -0.7 956,418 + CCNA_00878 0.84 -0.6 956,418 + CCNA_00878 0.84 -1.0 956,421 - CCNA_00878 0.84 -3.1 956,426 - CCNA_00878 0.84 -1.4 956,460 + CCNA_00878 0.87 -1.1 956,529 + -0.1 956,529 + -1.0 956,529 + -0.2 956,529 + -0.8 956,537 - +0.2 956,537 - -0.8 956,537 - -2.3 956,537 - +0.2 956,539 + -0.8 956,539 + -1.2 956,539 + -0.6 956,543 - -2.2 956,547 - -0.7 956,547 - -2.9 956,547 - -0.9 956,569 + +0.2 956,622 - -1.3 956,622 - -2.3 956,750 + -1.7 956,883 - -1.7 956,892 + -2.1 956,892 + -1.2 956,893 + +0.0 956,900 - -2.0 956,900 - -1.6 956,923 - -0.1 956,952 + -0.0 956,981 + -3.2 956,989 - +0.7 956,989 - -1.9 956,994 - -2.1 957,010 + -1.4 957,055 - CCNA_00879 0.11 -0.3 957,094 + CCNA_00879 0.13 -0.4 957,094 + CCNA_00879 0.13 -0.9 957,102 - CCNA_00879 0.13 +0.7 957,117 - CCNA_00879 0.14 -0.6 957,126 - CCNA_00879 0.14 -1.3 957,170 + CCNA_00879 0.16 +2.3 957,170 + CCNA_00879 0.16 +0.3 957,180 - CCNA_00879 0.16 -1.6 957,218 + CCNA_00879 0.18 -0.0 957,223 + CCNA_00879 0.18 -1.3 957,223 + CCNA_00879 0.18 +0.7 957,226 - CCNA_00879 0.18 +0.1 957,226 - CCNA_00879 0.18 +2.3 957,226 - CCNA_00879 0.18 +1.3 957,234 + CCNA_00879 0.19 -0.6 957,236 - CCNA_00879 0.19 +0.3 957,246 - CCNA_00879 0.19 +2.3 957,301 + CCNA_00879 0.22 -1.8 957,309 - CCNA_00879 0.22 +0.8 957,320 - CCNA_00879 0.23 -0.7 957,329 + CCNA_00879 0.23 -0.7 957,348 - CCNA_00879 0.24 +0.1 957,351 + CCNA_00879 0.24 -0.7 957,406 + CCNA_00879 0.26 -1.3 957,414 - CCNA_00879 0.27 -0.1 957,415 - CCNA_00879 0.27 -0.9 957,431 + CCNA_00879 0.28 -0.8 957,434 - CCNA_00879 0.28 -3.1 957,439 - CCNA_00879 0.28 -0.9 957,492 - CCNA_00879 0.30 -0.1 957,554 + CCNA_00879 0.33 +0.3 957,559 + CCNA_00879 0.33 -0.4 957,611 + CCNA_00879 0.35 +0.0
Or see this region's nucleotide sequence