Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around p5482_10

Experiment: Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Varel_Bryant medium with Dimethyl Sulfoxide 2 vol%
8,462	+		p5482_08	0.72	-0.6
8,463	-		p5482_08	0.72	-0.8
8,463	-		p5482_08	0.72	-1.5
8,463	-		p5482_08	0.72	+0.8
8,465	-		p5482_08	0.72	-0.4
8,473	+		p5482_08	0.73	+0.5
8,474	-				+0.5
8,489	+		p5482_08	0.74	+0.1
8,489	+		p5482_08	0.74	-1.8
8,490	-		p5482_08	0.74	-1.0
8,524	-		p5482_08	0.76	+1.0
8,534	+		p5482_08	0.77	+1.0
8,534	+		p5482_08	0.77	+0.5
8,534	+		p5482_08	0.77	-1.0
8,534	+		p5482_08	0.77	-0.5
8,534	+		p5482_08	0.77	+0.6
8,534	+		p5482_08	0.77	-0.5
8,534	+		p5482_08	0.77	-0.5
8,534	+		p5482_08	0.77	-0.5
8,535	-				+2.0
8,535	-		p5482_08	0.77	-1.0
8,535	-		p5482_08	0.77	-1.8
8,535	-		p5482_08	0.77	+1.0
8,535	-		p5482_08	0.77	-3.3
8,535	-		p5482_08	0.77	-0.3
8,535	-		p5482_08	0.77	-2.5
8,660	+		p5482_08	0.86	-0.4
8,661	-		p5482_08	0.86	-1.5
8,662	+		p5482_08	0.86	+0.2
8,679	+		p5482_08	0.87	+1.0
8,758	+				+0.0
8,758	+				-2.0
8,758	+				-0.3
8,799	-				-0.8
8,811	+				-0.5
8,812	-				-1.4
8,813	+				-2.0
8,813	+				-0.5
8,814	-				-3.0
8,814	-				-0.3
8,814	-				-2.9
8,814	-				-1.0
8,814	-				+0.3
8,837	+				-1.0
8,838	-				-1.0
8,838	-				-3.2
8,844	+				-1.3
8,845	-				+0.2
8,845	-				-0.5
8,845	-				-0.8
8,846	+				-0.8
8,846	+				+0.0
8,846	+				-0.7
8,846	+				-1.0
8,846	+				+0.0
8,846	+				-0.3
8,846	+				-0.1
8,846	+				-2.7
8,846	+				+1.0
8,846	+				-0.5
8,846	+				-1.3
8,846	+				-0.7
8,846	+				-0.8
8,847	-				-0.2
8,847	-				-0.5
8,847	-				-2.7
8,847	-				-2.6
8,847	-				-1.0
8,847	-				+0.0
8,860	+				+0.0
8,885	+				-0.3
8,923	-				-1.5
8,924	+				+0.0
8,925	-				-1.9
8,925	-				-0.4
8,958	+				-0.7
8,958	+				-1.5
8,959	-				-0.9
8,959	-				-0.2
8,963	+				+0.1
8,964	-				-1.2
8,964	-				-1.2
8,964	-				-0.8
8,978	+				-1.8
8,983	+				-2.2
8,983	+				+0.0
8,983	+				-1.2
8,984	-				-0.3
8,984	-				-1.8
8,984	-				-0.8
8,986	+				+1.6
9,016	-				+1.0
9,017	+				-1.3
9,017	+				-0.8
9,017	+				-1.5
9,017	+				-2.0
9,018	-				-0.2
9,018	-				-1.3
9,018	-				-1.3
9,018	-				-0.7
9,025	+				-1.4
9,026	-				-1.2
9,026	-				-0.1
9,026	-				-1.4
9,030	-				-0.7
9,030	-				-0.6
9,095	-				+0.0
9,102	+				-2.9
9,102	+				-1.6
9,102	+				-0.1
9,106	+				+0.0
9,107	-				-1.1
9,107	-				-1.0
9,144	-				-0.6
9,144	-				-0.6
9,181	+		p5482_09	0.19	-1.3
9,182	-		p5482_09	0.19	-0.9
9,182	-		p5482_09	0.19	-0.8
9,182	-		p5482_09	0.19	-0.4
9,182	-		p5482_09	0.19	+1.0
9,194	+		p5482_09	0.24	-0.7
9,195	-		p5482_09	0.24	-0.5
9,201	+		p5482_09	0.26	-1.0
9,264	+		p5482_09	0.48	+1.3
9,265	-		p5482_09	0.48	+0.1
9,265	-		p5482_09	0.48	-1.3
9,269	+		p5482_09	0.50	-2.3
9,270	-		p5482_09	0.50	-3.1
9,270	-		p5482_09	0.50	-1.5
9,275	+		p5482_09	0.52	-1.9
9,276	-				-1.0
9,276	-		p5482_09	0.52	-0.8
9,278	-		p5482_09	0.53	-1.0
9,316	+		p5482_09	0.66	-1.0
9,317	-		p5482_09	0.66	-1.0
9,317	-		p5482_09	0.66	-2.1
9,323	-		p5482_09	0.68	+1.0
9,323	-		p5482_09	0.68	-1.8
9,331	+		p5482_09	0.71	-1.3
9,339	+		p5482_09	0.74	-0.9
9,339	+		p5482_09	0.74	-0.5
9,340	-		p5482_09	0.74	-1.1
9,340	-		p5482_09	0.74	-1.0
9,340	-		p5482_09	0.74	-1.2
9,340	-		p5482_09	0.74	-0.2
9,340	-		p5482_09	0.74	-1.1
9,383	+		p5482_09	0.89	-1.3
9,384	-		p5482_09	0.90	-1.4
9,384	-		p5482_09	0.90	+0.0
9,384	-		p5482_09	0.90	-0.5
9,384	-		p5482_09	0.90	-1.4
9,384	-		p5482_09	0.90	-1.8
9,384	-		p5482_09	0.90	-0.3
9,399	-				-1.4
9,399	-				+0.0
9,412	-				-0.4
9,412	-				-2.4
9,489	-		p5482_10	0.25	-0.6
9,489	-		p5482_10	0.25	-0.5
9,489	-		p5482_10	0.25	-1.0
9,489	-		p5482_10	0.25	-0.3
9,493	+		p5482_10	0.26	+1.0
9,497	-		p5482_10	0.28	+0.0
9,497	-		p5482_10	0.28	+2.0
9,575	-		p5482_10	0.53	+0.6
9,629	-		p5482_10	0.71	-0.8
9,629	-		p5482_10	0.71	-0.7
9,676	-		p5482_10	0.87	-0.4
9,676	-		p5482_10	0.87	-0.7
9,676	-		p5482_10	0.87	-1.9
9,676	-		p5482_10	0.87	-1.1
9,676	-		p5482_10	0.87	-0.1
9,676	-		p5482_10	0.87	+0.1
9,713	+				-3.1
9,727	-				-0.8
9,734	+				+0.0
9,752	-				-0.5
9,756	+				+1.6
9,756	+				-0.9
9,756	+				-1.4
9,756	+				-1.8
9,756	+				-1.1
9,757	-				-1.8
9,757	-				-1.0
9,757	-				-0.5
9,757	-				-2.3
9,757	-				-1.0
9,757	-				-1.4
9,757	-				+0.2
9,757	-				-1.0
9,757	-				-0.5
9,770	+				-1.6
9,771	-				-0.7
9,771	-				+0.0
9,782	+				-1.3
9,782	+				-1.5
9,782	+				-0.2
9,782	+				-1.3
9,782	+				+0.6
9,782	+				+0.5
9,783	-				-0.5
9,783	-				+1.0
9,783	-				-1.3
9,783	-				+1.0
9,783	-				+1.0
9,814	+				+0.0
9,839	-				-0.3
9,839	-				-0.4
9,874	-				-0.8
9,874	-				-0.9
9,898	+				+1.0
9,899	-				-0.8
9,915	+				-0.1
9,917	+				-0.5
9,917	+				-2.0
9,917	+				-0.9
9,917	+				-0.9
9,917	+				+0.5
9,917	+				+1.0
9,917	+				-0.5
9,918	-				-0.8
9,918	-				-0.3
9,918	-				-1.3
9,918	-				-0.5
9,918	-				-0.5
9,918	-				-0.5
9,918	-				+0.5
9,918	-				-0.8
9,922	-				-0.9
9,922	-				-0.6
9,961	+				-0.1
9,961	+				+0.0
9,982	+		p5482_11	0.10	-0.6
9,982	+		p5482_11	0.10	-1.1
9,982	+		p5482_11	0.10	-1.3
9,983	-		p5482_11	0.10	-2.1
9,983	-		p5482_11	0.10	-1.3
9,983	-		p5482_11	0.10	+3.0
9,983	-		p5482_11	0.10	-1.1
9,983	-		p5482_11	0.10	+0.0
9,983	-		p5482_11	0.10	+1.0
9,983	-		p5482_11	0.10	+0.0
9,984	+		p5482_11	0.11	-1.8
9,984	+		p5482_11	0.11	+3.4
9,985	-		p5482_11	0.11	-1.2
9,985	-		p5482_11	0.11	-0.5
9,985	-		p5482_11	0.11	-1.4
9,986	+		p5482_11	0.11	-0.9
9,987	-		p5482_11	0.11	-1.1
9,987	-		p5482_11	0.11	+0.3
9,987	-		p5482_11	0.11	-0.5
9,987	-		p5482_11	0.11	-1.3
9,987	-		p5482_11	0.11	-1.0
9,987	-		p5482_11	0.11	-0.6
9,987	-		p5482_11	0.11	-1.0
9,987	-		p5482_11	0.11	-1.2
10,043	+		p5482_11	0.13	+1.0
10,044	-		p5482_11	0.13	-1.0
10,088	-		p5482_11	0.15	-0.5
10,088	-		p5482_11	0.15	+0.0
10,088	-		p5482_11	0.15	-0.1
10,088	-		p5482_11	0.15	-1.5
10,108	+		p5482_11	0.16	-2.1
10,109	-		p5482_11	0.16	-0.5
10,109	-		p5482_11	0.16	-0.7
10,256	-		p5482_11	0.22	-0.9
10,295	+		p5482_11	0.23	-1.0
10,295	+		p5482_11	0.23	-0.9
10,296	-		p5482_11	0.23	-0.7
10,296	-		p5482_11	0.23	+1.0
10,296	-		p5482_11	0.23	-1.1
10,296	-		p5482_11	0.23	+0.0
10,313	+		p5482_11	0.24	-1.7
10,314	-		p5482_11	0.24	+0.8
10,314	-		p5482_11	0.24	-0.2
10,338	-		p5482_11	0.25	-1.0
10,363	+		p5482_11	0.26	+1.0
10,364	-		p5482_11	0.26	-1.8
10,364	-		p5482_11	0.26	-1.4
10,385	+		p5482_11	0.27	+0.0
10,385	+		p5482_11	0.27	+1.0
10,386	-		p5482_11	0.27	-0.6
10,386	-		p5482_11	0.27	-0.8
10,386	-		p5482_11	0.27	-1.5
10,386	-		p5482_11	0.27	-1.1
10,386	-		p5482_11	0.27	-0.2
10,386	-		p5482_11	0.27	-0.4
10,386	-		p5482_11	0.27	-0.9
10,386	-		p5482_11	0.27	-1.6
10,388	-		p5482_11	0.27	-1.0
10,388	-		p5482_11	0.27	-1.1
10,393	-		p5482_11	0.27	-0.6
10,429	+		p5482_11	0.29	+1.5
10,430	-		p5482_11	0.29	-0.8
10,430	-		p5482_11	0.29	-1.4
10,430	-		p5482_11	0.29	+0.2
10,430	-		p5482_11	0.29	-0.7
10,430	-		p5482_11	0.29	-0.6
10,430	-		p5482_11	0.29	-0.7
10,430	-		p5482_11	0.29	-1.6
10,432	-		p5482_11	0.29	-0.9
10,578	-		p5482_11	0.35	-1.0
10,578	-		p5482_11	0.35	-2.0
10,578	-		p5482_11	0.35	-1.0
10,589	-		p5482_11	0.35	-1.0