Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4993 and Psyr_4994 are separated by 213 nucleotides Psyr_4994 and Psyr_4995 are separated by 30 nucleotides Psyr_4995 and Psyr_4996 are separated by 225 nucleotides
Psyr_4993: Psyr_4993 - hypothetical protein, at 5,923,136 to 5,923,936
_4993
Psyr_4994: Psyr_4994 - rhs-related protein, at 5,924,150 to 5,924,563
_4994
Psyr_4995: Psyr_4995 - RHS protein, at 5,924,594 to 5,925,109
_4995
Psyr_4996: Psyr_4996 - hypothetical protein, at 5,925,335 to 5,925,952
_4996
Position (kb) 5924
5925
5926 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5923.620 kb on + strand, within Psyr_4993 at 5923.655 kb on - strand, within Psyr_4993 at 5923.747 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.749 kb on + strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.750 kb on - strand, within Psyr_4993 at 5923.844 kb on + strand, within Psyr_4993 at 5923.871 kb on + strand at 5923.953 kb on + strand at 5923.991 kb on + strand at 5924.008 kb on - strand at 5924.437 kb on + strand, within Psyr_4994 at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.633 kb on + strand at 5924.848 kb on + strand, within Psyr_4995 at 5924.991 kb on + strand, within Psyr_4995 at 5925.007 kb on + strand, within Psyr_4995 at 5925.012 kb on + strand, within Psyr_4995 at 5925.080 kb on + strand at 5925.080 kb on + strand at 5925.081 kb on - strand at 5925.088 kb on - strand at 5925.091 kb on + strand at 5925.092 kb on - strand at 5925.174 kb on + strand at 5925.175 kb on - strand at 5925.178 kb on - strand at 5925.210 kb on + strand at 5925.220 kb on - strand at 5925.226 kb on - strand at 5925.252 kb on + strand at 5925.253 kb on - strand at 5925.253 kb on - strand at 5925.394 kb on - strand at 5925.482 kb on + strand, within Psyr_4996 at 5925.506 kb on - strand, within Psyr_4996 at 5925.535 kb on + strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.536 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.570 kb on - strand, within Psyr_4996 at 5925.651 kb on - strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.660 kb on + strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.661 kb on - strand, within Psyr_4996 at 5925.725 kb on + strand, within Psyr_4996 at 5925.728 kb on + strand, within Psyr_4996 at 5925.803 kb on + strand, within Psyr_4996 at 5925.810 kb on - strand, within Psyr_4996 at 5926.010 kb on + strand at 5926.022 kb on - strand at 5926.028 kb on + strand at 5926.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,923,620 + Psyr_4993 0.60 -1.0 5,923,655 - Psyr_4993 0.65 -1.7 5,923,747 + Psyr_4993 0.76 -1.4 5,923,749 + Psyr_4993 0.77 -1.3 5,923,749 + Psyr_4993 0.77 -1.9 5,923,749 + Psyr_4993 0.77 +0.2 5,923,749 + Psyr_4993 0.77 +0.4 5,923,749 + Psyr_4993 0.77 -1.0 5,923,750 - Psyr_4993 0.77 +0.1 5,923,750 - Psyr_4993 0.77 +1.2 5,923,844 + Psyr_4993 0.88 +1.5 5,923,871 + -0.5 5,923,953 + -3.5 5,923,991 + -0.9 5,924,008 - +1.6 5,924,437 + Psyr_4994 0.69 +2.4 5,924,633 + -2.1 5,924,633 + +1.4 5,924,633 + +2.2 5,924,633 + +1.1 5,924,633 + -2.7 5,924,848 + Psyr_4995 0.49 -0.0 5,924,991 + Psyr_4995 0.77 +0.7 5,925,007 + Psyr_4995 0.80 -2.1 5,925,012 + Psyr_4995 0.81 +1.9 5,925,080 + -1.0 5,925,080 + +1.9 5,925,081 - -1.4 5,925,088 - -1.0 5,925,091 + +2.0 5,925,092 - -0.7 5,925,174 + +2.0 5,925,175 - -0.3 5,925,178 - +0.7 5,925,210 + -2.1 5,925,220 - +1.2 5,925,226 - +4.8 5,925,252 + -0.2 5,925,253 - -1.4 5,925,253 - +0.3 5,925,394 - -0.6 5,925,482 + Psyr_4996 0.24 -1.2 5,925,506 - Psyr_4996 0.28 -1.6 5,925,535 + Psyr_4996 0.32 -0.4 5,925,536 - Psyr_4996 0.33 -0.3 5,925,536 - Psyr_4996 0.33 -2.2 5,925,570 - Psyr_4996 0.38 -1.4 5,925,570 - Psyr_4996 0.38 -2.0 5,925,651 - Psyr_4996 0.51 +1.0 5,925,660 + Psyr_4996 0.53 -0.1 5,925,660 + Psyr_4996 0.53 +0.9 5,925,660 + Psyr_4996 0.53 +2.4 5,925,660 + Psyr_4996 0.53 -0.0 5,925,660 + Psyr_4996 0.53 -2.5 5,925,660 + Psyr_4996 0.53 +0.7 5,925,660 + Psyr_4996 0.53 +1.5 5,925,660 + Psyr_4996 0.53 -0.3 5,925,660 + Psyr_4996 0.53 -1.2 5,925,661 - Psyr_4996 0.53 -2.6 5,925,661 - Psyr_4996 0.53 +1.3 5,925,661 - Psyr_4996 0.53 -1.6 5,925,661 - Psyr_4996 0.53 +0.3 5,925,661 - Psyr_4996 0.53 -1.2 5,925,661 - Psyr_4996 0.53 +0.8 5,925,661 - Psyr_4996 0.53 +0.7 5,925,661 - Psyr_4996 0.53 -0.4 5,925,725 + Psyr_4996 0.63 -2.0 5,925,728 + Psyr_4996 0.64 +1.3 5,925,803 + Psyr_4996 0.76 +1.5 5,925,810 - Psyr_4996 0.77 +1.0 5,926,010 + +2.1 5,926,022 - -3.0 5,926,028 + +2.8 5,926,045 - +1.3
Or see this region's nucleotide sequence