Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4915

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,825,821	+		Psyr_4913	0.84	+0.4
5,825,821	+		Psyr_4913	0.84	-2.5
5,825,821	+		Psyr_4913	0.84	-0.9
5,825,821	+		Psyr_4913	0.84	-0.8
5,825,821	+		Psyr_4913	0.84	+0.5
5,825,821	+		Psyr_4913	0.84	+0.7
5,825,821	+		Psyr_4913	0.84	-1.0
5,825,821	+		Psyr_4913	0.84	-2.2
5,825,822	-		Psyr_4913	0.85	+1.0
5,825,822	-		Psyr_4913	0.85	+3.0
5,825,822	-		Psyr_4913	0.85	+0.4
5,825,822	-		Psyr_4913	0.85	+1.0
5,825,822	-		Psyr_4913	0.85	+0.7
5,825,822	-		Psyr_4913	0.85	+1.1
5,825,822	-		Psyr_4913	0.85	+1.1
5,825,822	-		Psyr_4913	0.85	+0.7
5,825,822	-		Psyr_4913	0.85	+0.7
5,825,822	-		Psyr_4913	0.85	+0.2
5,825,822	-		Psyr_4913	0.85	+3.1
5,825,822	-		Psyr_4913	0.85	-0.8
5,825,842	+		Psyr_4913	0.88	-0.3
5,825,842	+		Psyr_4913	0.88	-3.3
5,825,842	+		Psyr_4913	0.88	+0.1
5,825,842	+		Psyr_4913	0.88	+0.1
5,825,842	+		Psyr_4913	0.88	-2.2
5,825,842	+		Psyr_4913	0.88	-0.3
5,825,842	+		Psyr_4913	0.88	-0.6
5,825,843	-		Psyr_4913	0.88	-1.4
5,825,843	-		Psyr_4913	0.88	-0.0
5,825,843	-		Psyr_4913	0.88	+2.1
5,825,843	-		Psyr_4913	0.88	+0.5
5,825,878	+				-1.6
5,825,878	+				+0.5
5,825,878	+				+2.8
5,825,878	+				-1.5
5,825,878	+				+1.9
5,825,878	+				-1.0
5,825,878	+				+2.5
5,825,878	+				-1.0
5,825,878	+				+1.8
5,825,878	+				+1.8
5,825,878	+				+1.5
5,825,878	+				+0.5
5,825,878	+				-0.7
5,825,878	+				+1.4
5,825,879	-				-1.3
5,825,879	-				+1.0
5,825,879	-				-1.3
5,825,879	-				+1.5
5,825,879	-				+1.1
5,825,879	-				-0.6
5,825,879	-				-0.2
5,825,879	-				-0.5
5,825,879	-				-1.6
5,825,879	-				-2.4
5,825,879	-				-2.2
5,826,090	+		Psyr_4914	0.24	-0.5
5,826,090	+		Psyr_4914	0.24	-2.8
5,826,090	+		Psyr_4914	0.24	+0.4
5,826,090	+		Psyr_4914	0.24	-2.4
5,826,090	+		Psyr_4914	0.24	+0.4
5,826,090	+		Psyr_4914	0.24	-1.6
5,826,090	+		Psyr_4914	0.24	-1.8
5,826,091	-		Psyr_4914	0.24	+1.5
5,826,091	-		Psyr_4914	0.24	-1.2
5,826,091	-		Psyr_4914	0.24	-0.1
5,826,091	-		Psyr_4914	0.24	+1.2
5,826,091	-		Psyr_4914	0.24	+0.5
5,826,091	-		Psyr_4914	0.24	-0.4
5,826,091	-		Psyr_4914	0.24	-2.3
5,826,091	-		Psyr_4914	0.24	+1.7
5,826,091	-		Psyr_4914	0.24	+1.1
5,826,091	-		Psyr_4914	0.24	+0.4
5,826,091	-		Psyr_4914	0.24	-1.0
5,826,141	+		Psyr_4914	0.31	-0.8
5,826,142	-		Psyr_4914	0.31	+0.1
5,826,142	-		Psyr_4914	0.31	+0.9
5,826,142	-		Psyr_4914	0.31	+0.5
5,826,144	+		Psyr_4914	0.32	+1.5
5,826,249	+		Psyr_4914	0.47	+2.8
5,826,249	+		Psyr_4914	0.47	+1.0
5,826,249	+		Psyr_4914	0.47	-0.2
5,826,249	+		Psyr_4914	0.47	-1.0
5,826,249	+		Psyr_4914	0.47	-2.3
5,826,249	+		Psyr_4914	0.47	+1.2
5,826,249	+		Psyr_4914	0.47	+1.2
5,826,250	-		Psyr_4914	0.47	+0.3
5,826,250	-		Psyr_4914	0.47	-1.3
5,826,250	-		Psyr_4914	0.47	-1.9
5,826,250	-		Psyr_4914	0.47	-0.2
5,826,250	-		Psyr_4914	0.47	-0.8
5,826,348	+		Psyr_4914	0.61	-1.1
5,826,348	+		Psyr_4914	0.61	-2.0
5,826,348	+		Psyr_4914	0.61	-0.8
5,826,348	+		Psyr_4914	0.61	-0.0
5,826,348	+		Psyr_4914	0.61	+1.4
5,826,348	+		Psyr_4914	0.61	-0.6
5,826,348	+		Psyr_4914	0.61	+0.7
5,826,348	+		Psyr_4914	0.61	+1.9
5,826,348	+		Psyr_4914	0.61	-1.3
5,826,348	+		Psyr_4914	0.61	+1.2
5,826,348	+		Psyr_4914	0.61	-1.0
5,826,348	+		Psyr_4914	0.61	-2.0
5,826,348	+		Psyr_4914	0.61	+1.9
5,826,348	+		Psyr_4914	0.61	-3.3
5,826,349	-		Psyr_4914	0.61	-1.9
5,826,349	-		Psyr_4914	0.61	-1.0
5,826,349	-		Psyr_4914	0.61	+0.4
5,826,349	-		Psyr_4914	0.61	-1.3
5,826,349	-		Psyr_4914	0.61	+1.0
5,826,349	-		Psyr_4914	0.61	+0.5
5,826,349	-		Psyr_4914	0.61	+1.0
5,826,349	-		Psyr_4914	0.61	-1.5
5,826,349	-		Psyr_4914	0.61	+0.5
5,826,349	-		Psyr_4914	0.61	+1.0
5,826,349	-		Psyr_4914	0.61	-0.8
5,826,351	-		Psyr_4914	0.62	+0.1
5,826,390	+		Psyr_4914	0.67	-0.7
5,826,492	+		Psyr_4914	0.82	-2.8
5,826,492	+		Psyr_4914	0.82	+0.8
5,826,492	+		Psyr_4914	0.82	+1.2
5,826,493	-		Psyr_4914	0.82	-3.3
5,826,531	+		Psyr_4914	0.88	-0.3
5,826,531	+		Psyr_4914	0.88	-1.3
5,826,531	+		Psyr_4914	0.88	-1.0
5,826,531	+		Psyr_4914	0.88	+0.3
5,826,532	-		Psyr_4914	0.88	-1.8
5,826,583	+				-1.3
5,826,583	+				-1.3
5,826,584	-				-0.8
5,826,592	+				-0.5
5,826,592	+				-1.8
5,826,615	+				-1.5
5,826,616	-				+1.2
5,826,616	-				+0.8
5,826,656	-				-0.7
5,826,656	-				-2.8
5,826,656	-				-1.0
5,826,656	-				-2.3
5,826,805	+		Psyr_4915	0.15	+0.2
5,827,263	+		Psyr_4915	0.51	-0.8
5,827,263	+		Psyr_4915	0.51	+1.9
5,827,263	+		Psyr_4915	0.51	+0.6
5,827,263	+		Psyr_4915	0.51	-2.9
5,827,263	+		Psyr_4915	0.51	+1.0
5,827,263	+		Psyr_4915	0.51	+0.8
5,827,263	+		Psyr_4915	0.51	-0.8
5,827,263	+		Psyr_4915	0.51	+0.5
5,827,263	+		Psyr_4915	0.51	+0.2
5,827,263	+		Psyr_4915	0.51	-0.6
5,827,263	+		Psyr_4915	0.51	-0.7
5,827,264	-		Psyr_4915	0.51	-0.7
5,827,264	-		Psyr_4915	0.51	-2.8
5,827,264	-		Psyr_4915	0.51	-2.7
5,827,264	-		Psyr_4915	0.51	+0.6
5,827,264	-		Psyr_4915	0.51	+0.1
5,827,264	-		Psyr_4915	0.51	-1.0
5,827,264	-		Psyr_4915	0.51	-3.0
5,827,264	-		Psyr_4915	0.51	+0.2
5,827,264	-		Psyr_4915	0.51	-0.3
5,827,264	-		Psyr_4915	0.51	+0.0
5,827,264	-		Psyr_4915	0.51	-1.5
5,827,264	-		Psyr_4915	0.51	+1.5
5,827,264	-		Psyr_4915	0.51	+0.3
5,827,363	+		Psyr_4915	0.59	+0.5
5,827,363	+		Psyr_4915	0.59	+2.3
5,827,364	-		Psyr_4915	0.59	-0.2
5,827,364	-		Psyr_4915	0.59	+0.3
5,827,364	-		Psyr_4915	0.59	-0.2
5,827,364	-		Psyr_4915	0.59	-0.9
5,827,364	-		Psyr_4915	0.59	+0.5
5,827,365	+		Psyr_4915	0.59	-3.2
5,827,487	+		Psyr_4915	0.68	-2.5
5,827,487	+		Psyr_4915	0.68	-0.8
5,827,488	-		Psyr_4915	0.69	+1.5
5,827,488	-		Psyr_4915	0.69	+0.7
5,827,488	-		Psyr_4915	0.69	-3.1
5,827,567	+		Psyr_4915	0.75	-2.6
5,827,567	+		Psyr_4915	0.75	-1.2
5,827,567	+		Psyr_4915	0.75	-0.5
5,827,567	+		Psyr_4915	0.75	+0.1
5,827,567	+		Psyr_4915	0.75	-0.8
5,827,568	-		Psyr_4915	0.75	-0.2
5,827,568	-		Psyr_4915	0.75	-1.3
5,827,568	-		Psyr_4915	0.75	-1.0
5,827,568	-		Psyr_4915	0.75	+1.2
5,827,568	-		Psyr_4915	0.75	-0.2
5,827,568	-		Psyr_4915	0.75	-3.4
5,827,568	-		Psyr_4915	0.75	-0.6
5,827,621	+		Psyr_4915	0.79	+0.2
5,827,622	-		Psyr_4915	0.79	-0.0
5,827,792	+				+1.0
5,827,792	+				-1.0
5,827,792	+				-1.3
5,827,792	+				+1.3
5,827,792	+				+0.5
5,827,792	+				+0.8
5,827,792	+				+1.5
5,827,792	+				-1.3
5,827,792	+				+0.2
5,827,792	+				-0.6
5,827,792	+				+0.4
5,827,792	+				+1.5
5,827,792	+				+0.5
5,827,792	+				-3.5
5,827,792	+				-2.6
5,827,792	+				-3.5
5,827,792	+				-0.5
5,827,792	+				-2.6
5,827,792	+				+0.2
5,827,793	-				+1.2
5,827,793	-				-1.5
5,827,793	-				+1.2
5,827,793	-				-1.9
5,827,793	-				-0.8
5,827,793	-				-3.0
5,827,793	-				+0.6
5,827,793	-				-2.9
5,827,793	-				+0.4
5,827,793	-				+0.0
5,827,793	-				+0.6
5,827,793	-				-0.1
5,827,810	+				-1.0
5,827,810	+				-1.8
5,827,849	-				+2.1
5,827,849	-				+0.9
5,827,915	-				+1.4
5,827,915	-				-0.3
5,828,050	+				-1.0
5,828,050	+				+1.9
5,828,050	+				-3.3
5,828,050	+				+2.5
5,828,050	+				-0.7
5,828,050	+				-1.9
5,828,050	+				-0.7
5,828,050	+				-1.5
5,828,050	+				-0.3
5,828,050	+				-2.2
5,828,051	-				-0.4
5,828,051	-				+0.4
5,828,051	-				-0.5
5,828,051	-				-2.5
5,828,051	-				+0.3
5,828,051	-				-2.6
5,828,051	-				-1.5
5,828,051	-				+0.7
5,828,055	-				+0.4
5,828,091	+				-0.0
5,828,418	+		Psyr_4916	0.72	+0.1
5,828,418	+		Psyr_4916	0.72	+0.4
5,828,418	+		Psyr_4916	0.72	+0.3
5,828,418	+		Psyr_4916	0.72	+1.4
5,828,419	-		Psyr_4916	0.72	+0.5
5,828,419	-		Psyr_4916	0.72	+2.5
5,828,419	-		Psyr_4916	0.72	-1.1
5,828,419	-		Psyr_4916	0.72	-3.0
5,828,498	+				-3.0
5,828,498	+				-0.7
5,828,499	-				+0.3
5,828,513	+				-1.0
5,828,513	+				-2.5
5,828,513	+				-0.4
5,828,513	+				-0.3
5,828,513	+				+2.1
5,828,513	+				-1.9
5,828,513	+				-2.3
5,828,513	+				+1.5
5,828,513	+				+0.5
5,828,513	+				-1.9
5,828,513	+				-0.4
5,828,513	+				-1.5
5,828,513	+				-0.5
5,828,513	+				+0.1
5,828,513	+				-2.4
5,828,514	-				+0.8
5,828,514	-				-1.3
5,828,514	-				+1.0
5,828,514	-				-2.0
5,828,514	-				+3.2
5,828,514	-				+0.2
5,828,514	-				-1.2
5,828,514	-				+2.3
5,828,514	-				-1.3
5,828,514	-				-1.5
5,828,599	-				+0.9
5,828,599	-				-0.5
5,828,599	-				-3.0
5,828,640	+				-0.5
5,828,640	+				-1.0
5,828,641	-				-0.8
5,828,688	-				-0.4
5,828,688	-				+3.2
5,828,688	-				-2.4
5,828,688	-				-1.3
5,828,688	-				+1.2
5,828,707	-				-0.5
5,828,723	-				-0.6
5,828,723	-				+1.5
5,828,743	+				-0.3
5,828,743	+				-0.9
5,828,743	+				+0.4
5,828,743	+				-1.0
5,828,743	+				-0.5
5,828,744	-				-0.0
5,828,744	-				+1.4
5,828,744	-				-0.8
5,828,744	-				+3.3
5,828,744	-				-0.8
5,828,744	-				-0.3
5,828,760	-				-2.9
5,828,760	-				-2.4
5,828,861	+				-4.0
5,828,861	+				-1.0
5,828,862	-				-2.5
5,828,862	-				-0.5