Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4590

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4587 and Psyr_4588 overlap by 11 nucleotidesPsyr_4588 and Psyr_4589 overlap by 4 nucleotidesPsyr_4589 and Psyr_4590 overlap by 4 nucleotidesPsyr_4590 and Psyr_4591 are separated by 3 nucleotides Psyr_4587: Psyr_4587 - Baseplate J-like protein, at 5,447,862 to 5,448,902 _4587 Psyr_4588: Psyr_4588 - Phage GP46, at 5,448,892 to 5,449,290 _4588 Psyr_4589: Psyr_4589 - Phage baseplate assembly protein V, at 5,449,287 to 5,449,799 _4589 Psyr_4590: Psyr_4590 - Bacteriophage Mu P, at 5,449,796 to 5,450,923 _4590 Psyr_4591: Psyr_4591 - DNA circulation, N-terminal, at 5,450,927 to 5,452,339 _4591 Position (kb) 5449 5450 5451Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5448.884 kb on + strandat 5448.884 kb on + strandat 5448.884 kb on + strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.885 kb on - strandat 5448.902 kb on + strandat 5448.902 kb on + strandat 5448.903 kb on - strandat 5448.903 kb on - strandat 5449.005 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.067 kb on + strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.068 kb on - strand, within Psyr_4588at 5449.367 kb on + strand, within Psyr_4589at 5449.368 kb on - strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.528 kb on + strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.529 kb on - strand, within Psyr_4589at 5449.632 kb on - strand, within Psyr_4589at 5449.836 kb on + strandat 5449.836 kb on + strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.837 kb on - strandat 5449.953 kb on + strand, within Psyr_4590at 5449.953 kb on + strand, within Psyr_4590at 5449.954 kb on - strand, within Psyr_4590at 5449.954 kb on - strand, within Psyr_4590at 5449.987 kb on + strand, within Psyr_4590at 5450.026 kb on + strand, within Psyr_4590at 5450.026 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.073 kb on + strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.074 kb on - strand, within Psyr_4590at 5450.192 kb on - strand, within Psyr_4590at 5450.688 kb on + strand, within Psyr_4590at 5450.688 kb on + strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.689 kb on - strand, within Psyr_4590at 5450.806 kb on + strand, within Psyr_4590at 5450.807 kb on - strand, within Psyr_4590at 5450.807 kb on - strand, within Psyr_4590at 5450.877 kb on + strandat 5450.877 kb on + strandat 5451.153 kb on + strand, within Psyr_4591at 5451.154 kb on - strand, within Psyr_4591at 5451.532 kb on + strand, within Psyr_4591at 5451.533 kb on - strand, within Psyr_4591at 5451.533 kb on - strand, within Psyr_4591at 5451.533 kb on - strand, within Psyr_4591at 5451.640 kb on + strand, within Psyr_4591at 5451.640 kb on + strand, within Psyr_4591at 5451.707 kb on - strand, within Psyr_4591at 5451.771 kb on + strand, within Psyr_4591at 5451.771 kb on + strand, within Psyr_4591at 5451.815 kb on + strand, within Psyr_4591at 5451.815 kb on + strand, within Psyr_4591at 5451.815 kb on + strand, within Psyr_4591at 5451.815 kb on + strand, within Psyr_4591at 5451.815 kb on + strand, within Psyr_4591at 5451.847 kb on + strand, within Psyr_4591

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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5,448,884 + -0.1
5,448,884 + +1.0
5,448,884 + +1.7
5,448,885 - -0.3
5,448,885 - -2.1
5,448,885 - +0.3
5,448,885 - +0.5
5,448,885 - -1.0
5,448,885 - +0.4
5,448,885 - -0.1
5,448,885 - +1.1
5,448,885 - -1.5
5,448,885 - -1.7
5,448,885 - -1.9
5,448,885 - +1.9
5,448,885 - +1.5
5,448,885 - +0.3
5,448,885 - +2.9
5,448,902 + +0.2
5,448,902 + +0.9
5,448,903 - +1.9
5,448,903 - +1.8
5,449,005 + Psyr_4588 0.28 -1.8
5,449,067 + Psyr_4588 0.44 +0.1
5,449,067 + Psyr_4588 0.44 +2.3
5,449,067 + Psyr_4588 0.44 +1.3
5,449,067 + Psyr_4588 0.44 -2.9
5,449,067 + Psyr_4588 0.44 -0.7
5,449,068 - Psyr_4588 0.44 +0.9
5,449,068 - Psyr_4588 0.44 -0.4
5,449,068 - Psyr_4588 0.44 -2.5
5,449,367 + Psyr_4589 0.16 +0.1
5,449,368 - Psyr_4589 0.16 +3.6
5,449,528 + Psyr_4589 0.47 +3.8
5,449,528 + Psyr_4589 0.47 +0.9
5,449,528 + Psyr_4589 0.47 +0.9
5,449,528 + Psyr_4589 0.47 +0.8
5,449,529 - Psyr_4589 0.47 -0.9
5,449,529 - Psyr_4589 0.47 +2.2
5,449,529 - Psyr_4589 0.47 -2.9
5,449,529 - Psyr_4589 0.47 +1.1
5,449,529 - Psyr_4589 0.47 +0.3
5,449,529 - Psyr_4589 0.47 +3.1
5,449,632 - Psyr_4589 0.67 -0.9
5,449,836 + -0.9
5,449,836 + +0.7
5,449,837 - +2.7
5,449,837 - -0.1
5,449,837 - +1.4
5,449,837 - +0.5
5,449,953 + Psyr_4590 0.14 -0.5
5,449,953 + Psyr_4590 0.14 -0.8
5,449,954 - Psyr_4590 0.14 +0.3
5,449,954 - Psyr_4590 0.14 +1.6
5,449,987 + Psyr_4590 0.17 +0.9
5,450,026 + Psyr_4590 0.20 -1.1
5,450,026 + Psyr_4590 0.20 +1.7
5,450,073 + Psyr_4590 0.25 +1.2
5,450,073 + Psyr_4590 0.25 +2.0
5,450,073 + Psyr_4590 0.25 +1.4
5,450,073 + Psyr_4590 0.25 -2.2
5,450,073 + Psyr_4590 0.25 -1.9
5,450,074 - Psyr_4590 0.25 -1.3
5,450,074 - Psyr_4590 0.25 -1.5
5,450,074 - Psyr_4590 0.25 +1.4
5,450,074 - Psyr_4590 0.25 +1.5
5,450,192 - Psyr_4590 0.35 -0.4
5,450,688 + Psyr_4590 0.79 -0.2
5,450,688 + Psyr_4590 0.79 +0.2
5,450,689 - Psyr_4590 0.79 +1.5
5,450,689 - Psyr_4590 0.79 +1.3
5,450,689 - Psyr_4590 0.79 +1.5
5,450,689 - Psyr_4590 0.79 +1.1
5,450,689 - Psyr_4590 0.79 -1.9
5,450,689 - Psyr_4590 0.79 -0.1
5,450,806 + Psyr_4590 0.90 -0.6
5,450,807 - Psyr_4590 0.90 -1.1
5,450,807 - Psyr_4590 0.90 +3.0
5,450,877 + +2.9
5,450,877 + +0.8
5,451,153 + Psyr_4591 0.16 +0.7
5,451,154 - Psyr_4591 0.16 -2.7
5,451,532 + Psyr_4591 0.43 +0.2
5,451,533 - Psyr_4591 0.43 -0.7
5,451,533 - Psyr_4591 0.43 +1.9
5,451,533 - Psyr_4591 0.43 +1.9
5,451,640 + Psyr_4591 0.50 -1.5
5,451,640 + Psyr_4591 0.50 +1.1
5,451,707 - Psyr_4591 0.55 +0.3
5,451,771 + Psyr_4591 0.60 -1.7
5,451,771 + Psyr_4591 0.60 +3.5
5,451,815 + Psyr_4591 0.63 +0.9
5,451,815 + Psyr_4591 0.63 +1.6
5,451,815 + Psyr_4591 0.63 +0.9
5,451,815 + Psyr_4591 0.63 -0.1
5,451,815 + Psyr_4591 0.63 +2.1
5,451,847 + Psyr_4591 0.65 -1.9

Or see this region's nucleotide sequence