Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4377 and Psyr_4378 are separated by 264 nucleotides Psyr_4378 and Psyr_4379 overlap by 1 nucleotides Psyr_4379 and Psyr_4380 are separated by 188 nucleotides
Psyr_4377: Psyr_4377 - response regulator receiver modulated diguanylate cyclase, at 5,232,552 to 5,234,207
_4377
Psyr_4378: Psyr_4378 - conserved hypothetical protein, at 5,234,472 to 5,235,551
_4378
Psyr_4379: Psyr_4379 - NUDIX hydrolase, at 5,235,551 to 5,236,096
_4379
Psyr_4380: Psyr_4380 - translation initiation factor 1 (eIF-1/SUI1), at 5,236,285 to 5,236,656
_4380
Position (kb) 5234
5235
5236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.827 kb on + strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.828 kb on - strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.829 kb on + strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.830 kb on - strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.831 kb on + strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5233.832 kb on - strand, within Psyr_4377 at 5234.216 kb on + strand at 5234.217 kb on - strand at 5234.217 kb on - strand at 5234.257 kb on + strand at 5234.258 kb on - strand at 5234.269 kb on + strand at 5234.269 kb on + strand at 5234.270 kb on - strand at 5234.287 kb on + strand at 5234.288 kb on - strand at 5234.288 kb on - strand at 5234.296 kb on + strand at 5234.297 kb on - strand at 5234.360 kb on + strand at 5234.361 kb on - strand at 5234.380 kb on + strand at 5234.380 kb on + strand at 5234.388 kb on + strand at 5234.388 kb on + strand at 5234.388 kb on + strand at 5234.388 kb on + strand at 5234.389 kb on - strand at 5234.389 kb on - strand at 5234.389 kb on - strand at 5234.389 kb on - strand at 5234.389 kb on - strand at 5234.389 kb on - strand at 5234.414 kb on + strand at 5234.414 kb on + strand at 5234.414 kb on + strand at 5234.414 kb on + strand at 5234.468 kb on + strand at 5234.468 kb on + strand at 5234.469 kb on - strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.565 kb on + strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.566 kb on - strand at 5234.568 kb on - strand at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.598 kb on + strand, within Psyr_4378 at 5234.599 kb on - strand, within Psyr_4378 at 5234.599 kb on - strand, within Psyr_4378 at 5234.599 kb on - strand, within Psyr_4378 at 5234.775 kb on + strand, within Psyr_4378 at 5234.835 kb on + strand, within Psyr_4378 at 5235.070 kb on - strand, within Psyr_4378 at 5235.279 kb on + strand, within Psyr_4378 at 5235.279 kb on + strand, within Psyr_4378 at 5235.279 kb on + strand, within Psyr_4378 at 5235.280 kb on - strand, within Psyr_4378 at 5235.280 kb on - strand, within Psyr_4378 at 5235.349 kb on + strand, within Psyr_4378 at 5235.349 kb on + strand, within Psyr_4378 at 5235.349 kb on + strand, within Psyr_4378 at 5235.349 kb on + strand, within Psyr_4378 at 5235.350 kb on - strand, within Psyr_4378 at 5235.350 kb on - strand, within Psyr_4378 at 5235.350 kb on - strand, within Psyr_4378 at 5235.350 kb on - strand, within Psyr_4378 at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.492 kb on + strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.493 kb on - strand at 5235.558 kb on + strand at 5235.559 kb on - strand at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.692 kb on + strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.693 kb on - strand, within Psyr_4379 at 5235.694 kb on + strand, within Psyr_4379 at 5235.694 kb on + strand, within Psyr_4379 at 5235.695 kb on - strand, within Psyr_4379 at 5235.758 kb on + strand, within Psyr_4379 at 5235.758 kb on + strand, within Psyr_4379 at 5235.759 kb on - strand, within Psyr_4379 at 5235.759 kb on - strand, within Psyr_4379 at 5235.777 kb on + strand, within Psyr_4379 at 5235.812 kb on + strand, within Psyr_4379 at 5235.812 kb on + strand, within Psyr_4379 at 5235.813 kb on - strand, within Psyr_4379 at 5235.940 kb on - strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.027 kb on + strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.028 kb on - strand, within Psyr_4379 at 5236.068 kb on - strand at 5236.072 kb on + strand at 5236.073 kb on - strand at 5236.080 kb on + strand at 5236.081 kb on - strand at 5236.241 kb on + strand at 5236.328 kb on + strand, within Psyr_4380 at 5236.328 kb on + strand, within Psyr_4380 at 5236.329 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380 at 5236.434 kb on - strand, within Psyr_4380
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,233,827 + Psyr_4377 0.77 +1.1 5,233,827 + Psyr_4377 0.77 +0.2 5,233,827 + Psyr_4377 0.77 -2.2 5,233,827 + Psyr_4377 0.77 -0.2 5,233,827 + Psyr_4377 0.77 -1.3 5,233,827 + Psyr_4377 0.77 -1.2 5,233,827 + Psyr_4377 0.77 +0.8 5,233,827 + Psyr_4377 0.77 +0.2 5,233,827 + Psyr_4377 0.77 -2.1 5,233,827 + Psyr_4377 0.77 +1.1 5,233,827 + Psyr_4377 0.77 -2.4 5,233,827 + Psyr_4377 0.77 +1.8 5,233,827 + Psyr_4377 0.77 -1.1 5,233,827 + Psyr_4377 0.77 -0.3 5,233,828 - Psyr_4377 0.77 +0.3 5,233,828 - Psyr_4377 0.77 +0.5 5,233,828 - Psyr_4377 0.77 +2.5 5,233,828 - Psyr_4377 0.77 +0.2 5,233,828 - Psyr_4377 0.77 +1.4 5,233,828 - Psyr_4377 0.77 -0.3 5,233,828 - Psyr_4377 0.77 -0.5 5,233,828 - Psyr_4377 0.77 -2.0 5,233,828 - Psyr_4377 0.77 +1.0 5,233,828 - Psyr_4377 0.77 -0.6 5,233,828 - Psyr_4377 0.77 -1.0 5,233,828 - Psyr_4377 0.77 +0.5 5,233,828 - Psyr_4377 0.77 -0.3 5,233,828 - Psyr_4377 0.77 +1.7 5,233,828 - Psyr_4377 0.77 +0.4 5,233,829 + Psyr_4377 0.77 -0.5 5,233,829 + Psyr_4377 0.77 -0.8 5,233,829 + Psyr_4377 0.77 -1.5 5,233,829 + Psyr_4377 0.77 +1.3 5,233,829 + Psyr_4377 0.77 +2.9 5,233,829 + Psyr_4377 0.77 +1.2 5,233,829 + Psyr_4377 0.77 +0.6 5,233,829 + Psyr_4377 0.77 -2.6 5,233,830 - Psyr_4377 0.77 -1.4 5,233,830 - Psyr_4377 0.77 +1.5 5,233,830 - Psyr_4377 0.77 +2.4 5,233,830 - Psyr_4377 0.77 -1.5 5,233,830 - Psyr_4377 0.77 +1.2 5,233,830 - Psyr_4377 0.77 +1.5 5,233,830 - Psyr_4377 0.77 -2.1 5,233,830 - Psyr_4377 0.77 +0.5 5,233,830 - Psyr_4377 0.77 -1.1 5,233,831 + Psyr_4377 0.77 -1.6 5,233,831 + Psyr_4377 0.77 -0.6 5,233,831 + Psyr_4377 0.77 +1.1 5,233,831 + Psyr_4377 0.77 +0.7 5,233,831 + Psyr_4377 0.77 -1.2 5,233,831 + Psyr_4377 0.77 -0.1 5,233,831 + Psyr_4377 0.77 -1.6 5,233,831 + Psyr_4377 0.77 +0.2 5,233,832 - Psyr_4377 0.77 +0.1 5,233,832 - Psyr_4377 0.77 -1.0 5,233,832 - Psyr_4377 0.77 -1.3 5,233,832 - Psyr_4377 0.77 +3.9 5,233,832 - Psyr_4377 0.77 -2.4 5,233,832 - Psyr_4377 0.77 -0.5 5,233,832 - Psyr_4377 0.77 -1.5 5,233,832 - Psyr_4377 0.77 +0.1 5,233,832 - Psyr_4377 0.77 +2.1 5,234,216 + -2.2 5,234,217 - -0.4 5,234,217 - -0.0 5,234,257 + +1.1 5,234,258 - -0.3 5,234,269 + +0.1 5,234,269 + +4.3 5,234,270 - -2.2 5,234,287 + +1.8 5,234,288 - +0.1 5,234,288 - +0.1 5,234,296 + -1.0 5,234,297 - -0.7 5,234,360 + +1.2 5,234,361 - +1.6 5,234,380 + -0.8 5,234,380 + -0.0 5,234,388 + +1.9 5,234,388 + -0.3 5,234,388 + +1.1 5,234,388 + +0.7 5,234,389 - +0.1 5,234,389 - -3.0 5,234,389 - +0.3 5,234,389 - +0.9 5,234,389 - +0.4 5,234,389 - -1.6 5,234,414 + +0.9 5,234,414 + -1.1 5,234,414 + -0.3 5,234,414 + -0.4 5,234,468 + +0.8 5,234,468 + +0.2 5,234,469 - +0.3 5,234,565 + +2.1 5,234,565 + -0.5 5,234,565 + +1.1 5,234,565 + -1.2 5,234,565 + -0.5 5,234,565 + +0.5 5,234,565 + -1.3 5,234,565 + -0.4 5,234,565 + -2.4 5,234,566 - -0.7 5,234,566 - +2.6 5,234,566 - -1.5 5,234,566 - +1.1 5,234,566 - -0.4 5,234,566 - -0.2 5,234,566 - -1.3 5,234,568 - -1.3 5,234,598 + Psyr_4378 0.12 -0.8 5,234,598 + Psyr_4378 0.12 +0.1 5,234,598 + Psyr_4378 0.12 -2.4 5,234,598 + Psyr_4378 0.12 -2.2 5,234,598 + Psyr_4378 0.12 +1.6 5,234,598 + Psyr_4378 0.12 -1.1 5,234,598 + Psyr_4378 0.12 +4.3 5,234,598 + Psyr_4378 0.12 +0.9 5,234,598 + Psyr_4378 0.12 +3.4 5,234,599 - Psyr_4378 0.12 +1.8 5,234,599 - Psyr_4378 0.12 +1.8 5,234,599 - Psyr_4378 0.12 -1.5 5,234,775 + Psyr_4378 0.28 -0.3 5,234,835 + Psyr_4378 0.34 -0.9 5,235,070 - Psyr_4378 0.55 +0.8 5,235,279 + Psyr_4378 0.75 +0.7 5,235,279 + Psyr_4378 0.75 -1.3 5,235,279 + Psyr_4378 0.75 +0.1 5,235,280 - Psyr_4378 0.75 +4.5 5,235,280 - Psyr_4378 0.75 +0.9 5,235,349 + Psyr_4378 0.81 -0.8 5,235,349 + Psyr_4378 0.81 -0.9 5,235,349 + Psyr_4378 0.81 +2.6 5,235,349 + Psyr_4378 0.81 +2.2 5,235,350 - Psyr_4378 0.81 -1.3 5,235,350 - Psyr_4378 0.81 -2.6 5,235,350 - Psyr_4378 0.81 +0.7 5,235,350 - Psyr_4378 0.81 +0.5 5,235,492 + +0.8 5,235,492 + -0.2 5,235,492 + -0.0 5,235,492 + +0.5 5,235,492 + +0.2 5,235,492 + -0.8 5,235,492 + -0.7 5,235,493 - -2.3 5,235,493 - +2.4 5,235,493 - -0.7 5,235,493 - +1.0 5,235,493 - +2.4 5,235,493 - -0.4 5,235,493 - -2.2 5,235,493 - +1.6 5,235,493 - -1.2 5,235,493 - -3.0 5,235,493 - +0.7 5,235,493 - -0.6 5,235,493 - -0.4 5,235,493 - -1.3 5,235,493 - -0.8 5,235,493 - +0.8 5,235,558 + -1.7 5,235,559 - -0.4 5,235,692 + Psyr_4379 0.26 +1.6 5,235,692 + Psyr_4379 0.26 -0.0 5,235,692 + Psyr_4379 0.26 -2.8 5,235,692 + Psyr_4379 0.26 +1.6 5,235,692 + Psyr_4379 0.26 +2.6 5,235,692 + Psyr_4379 0.26 -0.8 5,235,692 + Psyr_4379 0.26 +1.9 5,235,692 + Psyr_4379 0.26 -1.3 5,235,692 + Psyr_4379 0.26 +0.9 5,235,692 + Psyr_4379 0.26 -1.1 5,235,692 + Psyr_4379 0.26 +3.2 5,235,692 + Psyr_4379 0.26 +0.4 5,235,692 + Psyr_4379 0.26 -1.1 5,235,692 + Psyr_4379 0.26 -0.3 5,235,692 + Psyr_4379 0.26 -0.3 5,235,692 + Psyr_4379 0.26 +0.4 5,235,692 + Psyr_4379 0.26 -2.6 5,235,692 + Psyr_4379 0.26 -2.0 5,235,692 + Psyr_4379 0.26 +0.0 5,235,692 + Psyr_4379 0.26 -1.5 5,235,692 + Psyr_4379 0.26 -0.0 5,235,692 + Psyr_4379 0.26 +0.2 5,235,693 - Psyr_4379 0.26 +1.5 5,235,693 - Psyr_4379 0.26 -0.5 5,235,693 - Psyr_4379 0.26 -1.1 5,235,693 - Psyr_4379 0.26 +0.9 5,235,693 - Psyr_4379 0.26 +0.3 5,235,693 - Psyr_4379 0.26 -0.2 5,235,693 - Psyr_4379 0.26 +1.3 5,235,693 - Psyr_4379 0.26 +0.2 5,235,693 - Psyr_4379 0.26 +2.4 5,235,693 - Psyr_4379 0.26 +0.9 5,235,693 - Psyr_4379 0.26 -1.3 5,235,693 - Psyr_4379 0.26 -2.6 5,235,693 - Psyr_4379 0.26 -1.3 5,235,693 - Psyr_4379 0.26 +1.3 5,235,693 - Psyr_4379 0.26 -0.5 5,235,693 - Psyr_4379 0.26 +0.6 5,235,693 - Psyr_4379 0.26 -0.4 5,235,693 - Psyr_4379 0.26 -2.0 5,235,693 - Psyr_4379 0.26 -1.6 5,235,694 + Psyr_4379 0.26 +1.9 5,235,694 + Psyr_4379 0.26 +0.3 5,235,695 - Psyr_4379 0.26 -1.3 5,235,758 + Psyr_4379 0.38 +0.3 5,235,758 + Psyr_4379 0.38 +2.4 5,235,759 - Psyr_4379 0.38 +0.9 5,235,759 - Psyr_4379 0.38 +2.1 5,235,777 + Psyr_4379 0.41 -2.3 5,235,812 + Psyr_4379 0.48 +0.9 5,235,812 + Psyr_4379 0.48 -0.1 5,235,813 - Psyr_4379 0.48 +1.9 5,235,940 - Psyr_4379 0.71 +1.2 5,236,027 + Psyr_4379 0.87 -1.9 5,236,027 + Psyr_4379 0.87 +1.5 5,236,027 + Psyr_4379 0.87 -1.1 5,236,028 - Psyr_4379 0.87 +0.9 5,236,028 - Psyr_4379 0.87 +1.7 5,236,028 - Psyr_4379 0.87 +2.9 5,236,068 - +0.3 5,236,072 + -0.1 5,236,073 - -2.3 5,236,080 + +1.2 5,236,081 - -0.2 5,236,241 + +0.2 5,236,328 + Psyr_4380 0.12 -0.5 5,236,328 + Psyr_4380 0.12 -0.3 5,236,329 - Psyr_4380 0.12 +0.4 5,236,434 - Psyr_4380 0.40 -1.5 5,236,434 - Psyr_4380 0.40 -1.9 5,236,434 - Psyr_4380 0.40 +0.5
Or see this region's nucleotide sequence