Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4334

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,184,561	+		Psyr_4332	0.88	-0.4
5,184,561	+		Psyr_4332	0.88	+2.0
5,184,562	-		Psyr_4332	0.88	-0.1
5,184,828	-		Psyr_4333	0.21	+0.5
5,184,828	-		Psyr_4333	0.21	+0.9
5,184,860	+		Psyr_4333	0.25	+1.3
5,185,158	-		Psyr_4333	0.58	+1.5
5,185,158	-		Psyr_4333	0.58	+0.7
5,185,185	-		Psyr_4333	0.61	+0.1
5,185,185	-		Psyr_4333	0.61	-2.0
5,185,208	+		Psyr_4333	0.64	-0.4
5,185,208	+		Psyr_4333	0.64	+0.2
5,185,208	+		Psyr_4333	0.64	+0.7
5,185,208	+		Psyr_4333	0.64	+0.8
5,185,209	-		Psyr_4333	0.64	-0.5
5,185,209	-		Psyr_4333	0.64	+0.2
5,185,209	-		Psyr_4333	0.64	-0.3
5,185,210	+		Psyr_4333	0.64	-1.5
5,185,210	+		Psyr_4333	0.64	-2.0
5,185,210	+		Psyr_4333	0.64	-0.2
5,185,349	-		Psyr_4333	0.80	-2.1
5,185,551	+				-2.1
5,185,591	-				+0.2
5,185,677	+		Psyr_4334	0.12	-1.9
5,185,677	+		Psyr_4334	0.12	-0.2
5,185,677	+		Psyr_4334	0.12	+1.8
5,185,678	-		Psyr_4334	0.12	-2.6
5,185,678	-		Psyr_4334	0.12	-1.7
5,185,678	-		Psyr_4334	0.12	-2.1
5,185,681	+		Psyr_4334	0.12	-0.3
5,185,681	+		Psyr_4334	0.12	-0.4
5,185,682	-		Psyr_4334	0.12	+0.3
5,185,773	+		Psyr_4334	0.20	+2.2
5,185,774	-		Psyr_4334	0.20	-1.3
5,185,809	+		Psyr_4334	0.23	+3.2
5,185,809	+		Psyr_4334	0.23	-1.3
5,185,810	-		Psyr_4334	0.23	-0.1
5,185,810	-		Psyr_4334	0.23	-1.3
5,185,837	-		Psyr_4334	0.26	+1.0
5,185,837	-		Psyr_4334	0.26	-1.4
5,185,837	-		Psyr_4334	0.26	-1.6
5,185,839	+		Psyr_4334	0.26	-1.3
5,185,839	+		Psyr_4334	0.26	-0.4
5,185,839	+		Psyr_4334	0.26	-0.2
5,185,839	+		Psyr_4334	0.26	-1.1
5,185,839	+		Psyr_4334	0.26	-2.1
5,185,840	-		Psyr_4334	0.26	+1.0
5,185,840	-		Psyr_4334	0.26	-3.3
5,185,840	-		Psyr_4334	0.26	+2.5
5,185,840	-		Psyr_4334	0.26	-1.3
5,185,840	-		Psyr_4334	0.26	-2.0
5,185,840	-		Psyr_4334	0.26	-0.5
5,185,840	-		Psyr_4334	0.26	+2.8
5,185,840	-		Psyr_4334	0.26	-0.9
5,185,840	-		Psyr_4334	0.26	+0.7
5,185,880	+		Psyr_4334	0.29	+0.5
5,185,880	+		Psyr_4334	0.29	+1.7
5,185,880	+		Psyr_4334	0.29	+0.4
5,185,880	+		Psyr_4334	0.29	-0.9
5,185,880	+		Psyr_4334	0.29	+1.0
5,185,881	-		Psyr_4334	0.29	+0.2
5,185,881	-		Psyr_4334	0.29	+2.6
5,185,881	-		Psyr_4334	0.29	-2.1
5,185,881	-		Psyr_4334	0.29	+0.8
5,185,881	-		Psyr_4334	0.29	+1.1
5,185,881	-		Psyr_4334	0.29	-1.0
5,185,881	-		Psyr_4334	0.29	-2.1
5,185,902	-		Psyr_4334	0.31	-0.4
5,185,944	+		Psyr_4334	0.35	+2.1
5,185,945	-		Psyr_4334	0.35	-2.4
5,185,983	+		Psyr_4334	0.38	-3.8
5,185,983	+		Psyr_4334	0.38	-1.3
5,185,986	+		Psyr_4334	0.38	-2.7
5,185,986	+		Psyr_4334	0.38	+0.5
5,185,986	+		Psyr_4334	0.38	+0.1
5,185,986	+		Psyr_4334	0.38	-1.2
5,185,986	+		Psyr_4334	0.38	-0.4
5,185,986	+		Psyr_4334	0.38	+0.2
5,185,987	-		Psyr_4334	0.38	-0.1
5,185,987	-		Psyr_4334	0.38	-0.1
5,185,987	-		Psyr_4334	0.38	+0.2
5,185,987	-		Psyr_4334	0.38	+3.5
5,185,987	-		Psyr_4334	0.38	+0.7
5,185,987	-		Psyr_4334	0.38	-1.1
5,185,987	-		Psyr_4334	0.38	-3.8
5,185,987	-		Psyr_4334	0.38	-0.3
5,185,989	+		Psyr_4334	0.39	+0.6
5,185,989	+		Psyr_4334	0.39	+2.0
5,185,989	+		Psyr_4334	0.39	-0.9
5,185,989	+		Psyr_4334	0.39	+2.4
5,185,989	+		Psyr_4334	0.39	-1.1
5,185,989	+		Psyr_4334	0.39	+0.2
5,185,990	-		Psyr_4334	0.39	+0.7
5,185,990	-		Psyr_4334	0.39	-1.5
5,185,990	-		Psyr_4334	0.39	+0.5
5,185,990	-		Psyr_4334	0.39	-0.1
5,185,990	-		Psyr_4334	0.39	+0.5
5,186,011	+		Psyr_4334	0.41	-1.2
5,186,012	-		Psyr_4334	0.41	-0.9
5,186,019	+		Psyr_4334	0.41	+2.0
5,186,039	+		Psyr_4334	0.43	+1.8
5,186,039	+		Psyr_4334	0.43	+0.1
5,186,040	-		Psyr_4334	0.43	+0.5
5,186,040	-		Psyr_4334	0.43	+3.0
5,186,176	-		Psyr_4334	0.55	-1.2
5,186,176	-		Psyr_4334	0.55	+1.7
5,186,176	-		Psyr_4334	0.55	+0.5
5,186,672	+				+1.9
5,186,672	+				+0.5
5,186,672	+				+0.5
5,186,672	+				+1.7
5,186,672	+				-0.9
5,186,672	+				+2.5
5,186,672	+				+2.1
5,186,672	+				+0.8
5,186,672	+				+0.2
5,186,673	-				-0.9
5,186,673	-				+1.4
5,186,673	-				-0.2
5,186,673	-				+0.0
5,186,673	-				+0.6
5,186,673	-				-0.1
5,186,673	-				-0.3
5,186,673	-				-3.1
5,186,673	-				-0.1
5,186,673	-				+1.0
5,186,716	+				-2.7
5,186,717	-				+0.5
5,186,717	-				+0.2
5,186,738	-				-0.1
5,186,738	-				+2.2
5,186,738	-				-2.1
5,186,738	-				-1.2
5,186,738	-				+0.4
5,186,747	+				-0.9
5,186,816	+				+1.8
5,186,816	+				+1.0
5,186,816	+				+1.1
5,186,816	+				-0.9
5,186,816	+				+0.8
5,186,817	-				+1.4
5,186,817	-				-0.9
5,186,817	-				+0.4
5,186,817	-				+0.1
5,186,817	-				+0.0
5,186,817	-				+0.3
5,186,875	+				-2.9
5,186,875	+				-0.9
5,186,875	+				-1.7
5,186,875	+				+1.7
5,186,875	+				-2.4
5,186,875	+				+2.5
5,186,875	+				+0.1
5,186,875	+				-0.8
5,186,875	+				+1.0
5,186,875	+				+1.3
5,186,875	+				+1.2
5,186,875	+				-2.9
5,186,875	+				+1.5
5,186,875	+				+0.8
5,186,875	+				+0.8
5,186,875	+				+1.3
5,186,875	+				-1.0
5,186,875	+				-0.4
5,186,876	-				-0.5
5,186,876	-				-2.9
5,186,876	-				-0.2
5,186,876	-				-0.9
5,186,876	-				-2.9
5,186,879	+				-1.1
5,186,879	+				-2.9
5,186,880	-				-2.1
5,186,880	-				-2.3
5,186,880	-				+0.5
5,186,880	-				+0.8
5,186,976	+				-0.8
5,186,977	-				+1.0
5,187,034	-				-3.1
5,187,160	-		Psyr_4335	0.15	+1.5
5,187,243	-		Psyr_4335	0.32	+2.6
5,187,302	+		Psyr_4335	0.44	-1.1
5,187,303	-		Psyr_4335	0.44	-0.9
5,187,420	-		Psyr_4335	0.68	-0.9