Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4034

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,806,545	-		Psyr_4033	0.82	+0.1
4,806,605	+		Psyr_4033	0.84	+0.0
4,806,631	+		Psyr_4033	0.85	-0.2
4,806,631	+		Psyr_4033	0.85	-1.2
4,806,631	+		Psyr_4033	0.85	-0.5
4,806,631	+		Psyr_4033	0.85	-3.6
4,806,694	+		Psyr_4033	0.87	-1.8
4,806,695	-		Psyr_4033	0.87	+2.7
4,806,695	-		Psyr_4033	0.87	+0.5
4,806,739	-		Psyr_4033	0.89	-0.8
4,806,856	+				+3.4
4,806,856	+				+1.4
4,806,856	+				-1.2
4,806,857	-				+1.2
4,806,857	-				-0.1
4,806,857	-				-2.5
4,806,919	+				+2.1
4,806,920	-				-1.4
4,806,920	-				+0.3
4,806,967	+				+0.4
4,807,026	-				-1.3
4,807,091	+				+0.2
4,807,091	+				-2.7
4,807,091	+				-0.5
4,807,170	-				+0.9
4,807,171	+				-1.4
4,807,171	+				+0.0
4,807,172	-				+0.2
4,807,172	-				-0.5
4,807,172	-				-0.1
4,807,205	-				+0.7
4,807,253	+				-1.2
4,807,333	+				+3.1
4,807,333	+				-0.9
4,807,334	-				-0.1
4,807,481	+				-1.3
4,807,481	+				-4.2
4,807,481	+				-0.5
4,807,481	+				+1.7
4,807,481	+				+0.9
4,807,482	-				-1.2
4,807,482	-				+1.7
4,807,482	-				+1.2
4,807,622	-		Psyr_4034	0.11	+1.7
4,807,691	-		Psyr_4034	0.13	-0.9
4,807,716	+		Psyr_4034	0.14	-0.8
4,807,717	-		Psyr_4034	0.14	+0.2
4,807,857	-		Psyr_4034	0.19	+1.5
4,807,882	+		Psyr_4034	0.19	+0.3
4,807,883	-		Psyr_4034	0.20	+2.2
4,807,883	-		Psyr_4034	0.20	+0.6
4,807,886	+		Psyr_4034	0.20	+0.4
4,807,886	+		Psyr_4034	0.20	-0.9
4,807,886	+		Psyr_4034	0.20	+1.6
4,807,886	+		Psyr_4034	0.20	-2.3
4,807,886	+		Psyr_4034	0.20	+1.9
4,807,886	+		Psyr_4034	0.20	+1.1
4,807,887	-		Psyr_4034	0.20	-2.3
4,807,887	-		Psyr_4034	0.20	+1.0
4,807,887	-		Psyr_4034	0.20	-0.7
4,807,887	-		Psyr_4034	0.20	-0.0
4,807,902	+		Psyr_4034	0.20	+0.4
4,807,903	-		Psyr_4034	0.20	-0.4
4,807,903	-		Psyr_4034	0.20	-1.8
4,807,903	-		Psyr_4034	0.20	-0.0
4,807,937	+		Psyr_4034	0.21	+0.8
4,807,937	+		Psyr_4034	0.21	+1.7
4,807,938	-		Psyr_4034	0.21	+3.2
4,807,938	-		Psyr_4034	0.21	+1.1
4,807,938	-		Psyr_4034	0.21	-0.6
4,807,938	-		Psyr_4034	0.21	+0.5
4,807,938	-		Psyr_4034	0.21	-1.4
4,807,942	-		Psyr_4034	0.22	-0.1
4,807,942	-		Psyr_4034	0.22	-0.5
4,807,983	+		Psyr_4034	0.23	+3.0
4,807,983	+		Psyr_4034	0.23	+2.1
4,807,984	-		Psyr_4034	0.23	-0.0
4,808,053	-		Psyr_4034	0.25	+0.9
4,808,101	-		Psyr_4034	0.27	-2.4
4,808,253	+		Psyr_4034	0.32	+2.5
4,808,253	+		Psyr_4034	0.32	+0.1
4,808,254	-		Psyr_4034	0.32	-1.6
4,808,254	-		Psyr_4034	0.32	+2.6
4,808,254	-		Psyr_4034	0.32	+2.1
4,808,265	+		Psyr_4034	0.32	+1.0
4,808,295	-		Psyr_4034	0.34	-0.5
4,808,376	+		Psyr_4034	0.36	+1.0
4,808,376	+		Psyr_4034	0.36	-0.6
4,808,377	-		Psyr_4034	0.36	-1.8
4,808,377	-		Psyr_4034	0.36	-1.8
4,808,377	-		Psyr_4034	0.36	+3.1
4,808,377	-		Psyr_4034	0.36	-2.1
4,808,377	-		Psyr_4034	0.36	+0.4
4,808,377	-		Psyr_4034	0.36	+1.2
4,808,475	+		Psyr_4034	0.40	+0.3
4,808,476	-		Psyr_4034	0.40	-1.5
4,808,693	-		Psyr_4034	0.47	+0.7
4,808,696	+		Psyr_4034	0.47	-0.3
4,808,696	+		Psyr_4034	0.47	-2.1
4,808,696	+		Psyr_4034	0.47	+2.1
4,808,696	+		Psyr_4034	0.47	+0.3
4,808,696	+		Psyr_4034	0.47	-2.2
4,808,696	+		Psyr_4034	0.47	+0.8
4,808,696	+		Psyr_4034	0.47	-1.6
4,808,696	+		Psyr_4034	0.47	-1.1
4,808,697	-		Psyr_4034	0.47	-0.7
4,808,697	-		Psyr_4034	0.47	-1.1
4,808,697	-		Psyr_4034	0.47	+1.6
4,808,697	-		Psyr_4034	0.47	+2.6
4,808,697	-		Psyr_4034	0.47	-0.8
4,808,724	+		Psyr_4034	0.48	+2.1
4,809,271	+		Psyr_4034	0.67	-0.0
4,809,272	-		Psyr_4034	0.67	-0.2
4,809,272	-		Psyr_4034	0.67	-0.8
4,809,295	+		Psyr_4034	0.67	-1.4
4,809,296	-		Psyr_4034	0.67	+3.5
4,809,432	-		Psyr_4034	0.72	-0.2
4,809,441	+		Psyr_4034	0.72	-1.4
4,809,460	+		Psyr_4034	0.73	+1.0
4,809,460	+		Psyr_4034	0.73	+1.7
4,809,685	+		Psyr_4034	0.81	+1.9
4,809,685	+		Psyr_4034	0.81	-0.3
4,809,727	+		Psyr_4034	0.82	+0.4
4,809,775	-		Psyr_4034	0.84	-1.8
4,809,829	+		Psyr_4034	0.86	+0.5
4,809,894	+		Psyr_4034	0.88	+1.8
4,809,895	-		Psyr_4034	0.88	+2.2
4,809,895	-		Psyr_4034	0.88	+1.1
4,809,960	+				+1.6
4,809,960	+				+1.3
4,809,960	+				-1.8
4,809,996	-				+1.2
4,810,092	-				+0.1
4,810,142	+				-1.2
4,810,142	+				+0.8
4,810,143	-				+2.3
4,810,143	-				+1.5
4,810,168	+				+1.6
4,810,168	+				-1.5
4,810,168	+				+3.4
4,810,169	-				+0.1
4,810,169	-				+1.4
4,810,169	-				-1.0
4,810,169	-				-1.7
4,810,169	-				-2.2
4,810,265	+				+1.9
4,810,352	+				-1.2
4,810,353	-				+0.0
4,810,355	+				-0.9
4,810,355	+				-1.5
4,810,356	-				-1.6
4,810,356	-				-1.6
4,810,356	-				-0.3
4,810,356	-				+2.0
4,810,356	-				+0.1
4,810,356	-				-2.1
4,810,384	+				-0.6
4,810,384	+				+0.3
4,810,385	-				+1.1
4,810,437	-				-0.3
4,810,487	+				+0.7
4,810,487	+				+2.0
4,810,487	+				-2.4
4,810,487	+				+1.0
4,810,487	+				+0.7
4,810,487	+				-0.1
4,810,487	+				+2.2
4,810,487	+				-0.5
4,810,488	-				+1.2
4,810,488	-				-0.0
4,810,488	-				-0.7
4,810,488	-				-2.7
4,810,488	-				-0.3
4,810,637	-				+1.6
4,810,665	-				-0.9
4,810,665	-				-0.5
4,810,665	-				-1.9
4,810,665	-				-2.7
4,810,666	+				-1.3
4,810,666	+				-2.5
4,810,667	-				+1.4
4,810,700	+				-2.4
4,810,723	+				+1.8
4,810,775	+				+2.1
4,810,775	+				+1.8
4,810,776	-				-1.4
4,810,776	-				+0.8
4,810,823	+		Psyr_4035	0.11	-2.1
4,810,823	+		Psyr_4035	0.11	-1.6
4,810,823	+		Psyr_4035	0.11	-3.2
4,810,823	+		Psyr_4035	0.11	-0.9
4,810,824	-		Psyr_4035	0.11	-1.7
4,810,824	-		Psyr_4035	0.11	+1.0
4,810,824	-		Psyr_4035	0.11	-0.4
4,810,856	+		Psyr_4035	0.12	+1.1
4,810,856	+		Psyr_4035	0.12	-1.4
4,810,857	-		Psyr_4035	0.12	+1.2
4,810,857	-		Psyr_4035	0.12	-2.2
4,810,857	-		Psyr_4035	0.12	-0.6
4,810,859	+		Psyr_4035	0.12	-0.8
4,810,859	+		Psyr_4035	0.12	+0.1
4,810,859	+		Psyr_4035	0.12	+1.5
4,810,859	+		Psyr_4035	0.12	-1.2
4,810,860	-		Psyr_4035	0.12	-1.2
4,810,860	-		Psyr_4035	0.12	+1.3
4,810,860	-		Psyr_4035	0.12	-0.8
4,810,860	-		Psyr_4035	0.12	+0.3
4,810,860	-		Psyr_4035	0.12	-1.9
4,810,860	-		Psyr_4035	0.12	-1.0
4,810,860	-		Psyr_4035	0.12	-0.2
4,810,888	+		Psyr_4035	0.12	-1.5
4,810,888	+		Psyr_4035	0.12	-1.7
4,810,889	-		Psyr_4035	0.12	-2.8
4,810,892	+		Psyr_4035	0.12	+1.2
4,810,892	+		Psyr_4035	0.12	+0.8
4,810,892	+		Psyr_4035	0.12	+2.3
4,810,893	-		Psyr_4035	0.12	-0.5
4,810,893	-		Psyr_4035	0.12	+0.5
4,811,021	-		Psyr_4035	0.15	-0.5
4,811,021	-		Psyr_4035	0.15	-2.9
4,811,048	+		Psyr_4035	0.16	+1.4
4,811,048	+		Psyr_4035	0.16	+2.1
4,811,048	+		Psyr_4035	0.16	+0.6
4,811,049	-		Psyr_4035	0.16	-2.2
4,811,128	+		Psyr_4035	0.17	+0.0
4,811,128	+		Psyr_4035	0.17	+1.3
4,811,128	+		Psyr_4035	0.17	-1.8
4,811,129	-		Psyr_4035	0.17	+2.4
4,811,129	-		Psyr_4035	0.17	-2.8
4,811,227	+		Psyr_4035	0.19	+1.4
4,811,228	-		Psyr_4035	0.19	-0.9
4,811,228	-		Psyr_4035	0.19	+0.1
4,811,235	-		Psyr_4035	0.19	+1.9