Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4021

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4020 and Psyr_4021 are separated by 180 nucleotidesPsyr_4021 and Psyr_4022 overlap by 4 nucleotidesPsyr_4022 and Psyr_4023 overlap by 14 nucleotides Psyr_4020: Psyr_4020 - Exodeoxyribonuclease I subunit C, at 4,787,147 to 4,788,577 _4020 Psyr_4021: Psyr_4021 - RDD, at 4,788,758 to 4,789,483 _4021 Psyr_4022: Psyr_4022 - integral membrane protein, at 4,789,480 to 4,790,460 _4022 Psyr_4023: Psyr_4023 - conserved hypothetical protein, at 4,790,447 to 4,792,036 _4023 Position (kb) 4788 4789 4790Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4787.771 kb on + strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.772 kb on - strand, within Psyr_4020at 4787.880 kb on + strand, within Psyr_4020at 4787.881 kb on - strand, within Psyr_4020at 4787.881 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.912 kb on - strand, within Psyr_4020at 4787.979 kb on + strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.980 kb on - strand, within Psyr_4020at 4787.985 kb on + strand, within Psyr_4020at 4787.986 kb on - strand, within Psyr_4020at 4787.986 kb on - strand, within Psyr_4020at 4788.076 kb on + strand, within Psyr_4020at 4788.077 kb on - strand, within Psyr_4020at 4788.163 kb on - strand, within Psyr_4020at 4788.163 kb on - strand, within Psyr_4020at 4788.225 kb on + strand, within Psyr_4020at 4788.291 kb on + strand, within Psyr_4020at 4788.292 kb on - strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.332 kb on + strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.333 kb on - strand, within Psyr_4020at 4788.555 kb on + strandat 4788.611 kb on - strandat 4788.645 kb on + strandat 4788.673 kb on - strandat 4788.683 kb on + strandat 4788.702 kb on + strandat 4788.703 kb on - strandat 4788.703 kb on - strandat 4788.717 kb on - strandat 4788.720 kb on + strandat 4788.720 kb on + strandat 4788.721 kb on - strandat 4788.721 kb on - strandat 4788.721 kb on - strandat 4788.721 kb on - strandat 4788.848 kb on - strand, within Psyr_4021at 4788.951 kb on + strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.010 kb on + strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.011 kb on - strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.180 kb on + strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.181 kb on - strand, within Psyr_4021at 4789.245 kb on - strand, within Psyr_4021at 4789.447 kb on - strandat 4789.447 kb on - strandat 4789.447 kb on - strandat 4789.447 kb on - strandat 4789.477 kb on + strandat 4789.477 kb on + strandat 4789.478 kb on - strandat 4789.706 kb on - strand, within Psyr_4022at 4789.850 kb on - strand, within Psyr_4022at 4789.870 kb on + strand, within Psyr_4022at 4789.870 kb on + strand, within Psyr_4022at 4789.870 kb on + strand, within Psyr_4022at 4789.870 kb on + strand, within Psyr_4022at 4789.871 kb on - strand, within Psyr_4022at 4789.871 kb on - strand, within Psyr_4022at 4789.871 kb on - strand, within Psyr_4022at 4789.871 kb on - strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.911 kb on + strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.912 kb on - strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.915 kb on + strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.916 kb on - strand, within Psyr_4022at 4789.990 kb on + strand, within Psyr_4022at 4789.990 kb on + strand, within Psyr_4022at 4789.990 kb on + strand, within Psyr_4022at 4789.990 kb on + strand, within Psyr_4022at 4789.990 kb on + strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4789.991 kb on - strand, within Psyr_4022at 4790.026 kb on + strand, within Psyr_4022at 4790.026 kb on + strand, within Psyr_4022at 4790.341 kb on + strand, within Psyr_4022at 4790.381 kb on - strandat 4790.439 kb on + strandat 4790.439 kb on + strandat 4790.439 kb on + strandat 4790.439 kb on + strandat 4790.439 kb on + strandat 4790.439 kb on + strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.440 kb on - strandat 4790.475 kb on + strandat 4790.476 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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4,787,771 + Psyr_4020 0.44 +0.4
4,787,772 - Psyr_4020 0.44 +0.2
4,787,772 - Psyr_4020 0.44 -1.7
4,787,880 + Psyr_4020 0.51 -2.4
4,787,881 - Psyr_4020 0.51 -2.2
4,787,881 - Psyr_4020 0.51 -1.4
4,787,912 - Psyr_4020 0.53 +0.6
4,787,912 - Psyr_4020 0.53 -3.2
4,787,912 - Psyr_4020 0.53 -1.9
4,787,979 + Psyr_4020 0.58 -1.2
4,787,980 - Psyr_4020 0.58 -0.4
4,787,980 - Psyr_4020 0.58 -2.0
4,787,980 - Psyr_4020 0.58 +0.0
4,787,980 - Psyr_4020 0.58 +0.2
4,787,980 - Psyr_4020 0.58 +0.4
4,787,980 - Psyr_4020 0.58 +0.5
4,787,985 + Psyr_4020 0.59 +1.8
4,787,986 - Psyr_4020 0.59 +0.8
4,787,986 - Psyr_4020 0.59 -0.4
4,788,076 + Psyr_4020 0.65 -0.1
4,788,077 - Psyr_4020 0.65 -0.3
4,788,163 - Psyr_4020 0.71 +1.0
4,788,163 - Psyr_4020 0.71 -1.6
4,788,225 + Psyr_4020 0.75 -2.1
4,788,291 + Psyr_4020 0.80 -0.3
4,788,292 - Psyr_4020 0.80 -1.2
4,788,332 + Psyr_4020 0.83 -2.8
4,788,332 + Psyr_4020 0.83 -0.7
4,788,332 + Psyr_4020 0.83 -0.8
4,788,333 - Psyr_4020 0.83 +0.0
4,788,333 - Psyr_4020 0.83 +0.6
4,788,333 - Psyr_4020 0.83 -3.1
4,788,333 - Psyr_4020 0.83 +1.0
4,788,555 + -1.5
4,788,611 - +0.8
4,788,645 + -1.5
4,788,673 - -0.3
4,788,683 + +0.8
4,788,702 + -1.9
4,788,703 - +2.6
4,788,703 - +0.2
4,788,717 - -1.2
4,788,720 + -3.1
4,788,720 + +1.6
4,788,721 - -2.1
4,788,721 - -3.1
4,788,721 - -0.0
4,788,721 - +0.9
4,788,848 - Psyr_4021 0.12 -0.4
4,788,951 + Psyr_4021 0.27 -2.5
4,789,010 + Psyr_4021 0.35 +3.8
4,789,010 + Psyr_4021 0.35 -0.9
4,789,010 + Psyr_4021 0.35 -3.5
4,789,011 - Psyr_4021 0.35 +0.5
4,789,011 - Psyr_4021 0.35 +0.6
4,789,011 - Psyr_4021 0.35 -2.1
4,789,011 - Psyr_4021 0.35 -1.5
4,789,011 - Psyr_4021 0.35 -0.2
4,789,011 - Psyr_4021 0.35 +0.2
4,789,011 - Psyr_4021 0.35 +0.7
4,789,180 + Psyr_4021 0.58 -0.2
4,789,180 + Psyr_4021 0.58 +2.0
4,789,180 + Psyr_4021 0.58 -1.7
4,789,180 + Psyr_4021 0.58 -1.6
4,789,180 + Psyr_4021 0.58 +0.3
4,789,180 + Psyr_4021 0.58 -0.1
4,789,181 - Psyr_4021 0.58 -3.0
4,789,181 - Psyr_4021 0.58 -1.9
4,789,181 - Psyr_4021 0.58 -2.4
4,789,181 - Psyr_4021 0.58 -2.3
4,789,181 - Psyr_4021 0.58 -0.7
4,789,181 - Psyr_4021 0.58 -0.6
4,789,181 - Psyr_4021 0.58 -0.3
4,789,245 - Psyr_4021 0.67 +1.9
4,789,447 - +0.9
4,789,447 - +0.0
4,789,447 - +1.0
4,789,447 - +1.4
4,789,477 + +0.1
4,789,477 + -1.4
4,789,478 - -0.8
4,789,706 - Psyr_4022 0.23 -2.4
4,789,850 - Psyr_4022 0.38 -0.3
4,789,870 + Psyr_4022 0.40 -2.0
4,789,870 + Psyr_4022 0.40 +1.2
4,789,870 + Psyr_4022 0.40 -0.1
4,789,870 + Psyr_4022 0.40 -2.2
4,789,871 - Psyr_4022 0.40 -2.6
4,789,871 - Psyr_4022 0.40 -0.3
4,789,871 - Psyr_4022 0.40 -1.8
4,789,871 - Psyr_4022 0.40 -1.4
4,789,911 + Psyr_4022 0.44 -0.5
4,789,911 + Psyr_4022 0.44 +0.5
4,789,911 + Psyr_4022 0.44 +1.3
4,789,911 + Psyr_4022 0.44 +1.0
4,789,911 + Psyr_4022 0.44 -2.3
4,789,911 + Psyr_4022 0.44 +0.0
4,789,911 + Psyr_4022 0.44 -2.5
4,789,911 + Psyr_4022 0.44 +0.0
4,789,911 + Psyr_4022 0.44 -1.9
4,789,911 + Psyr_4022 0.44 -3.0
4,789,911 + Psyr_4022 0.44 +2.6
4,789,911 + Psyr_4022 0.44 +0.4
4,789,911 + Psyr_4022 0.44 +2.1
4,789,911 + Psyr_4022 0.44 +0.1
4,789,911 + Psyr_4022 0.44 -1.9
4,789,912 - Psyr_4022 0.44 +0.4
4,789,912 - Psyr_4022 0.44 -0.8
4,789,912 - Psyr_4022 0.44 +2.9
4,789,912 - Psyr_4022 0.44 -0.5
4,789,912 - Psyr_4022 0.44 +0.9
4,789,912 - Psyr_4022 0.44 +1.0
4,789,912 - Psyr_4022 0.44 +2.2
4,789,912 - Psyr_4022 0.44 -2.8
4,789,912 - Psyr_4022 0.44 -1.1
4,789,912 - Psyr_4022 0.44 -0.7
4,789,912 - Psyr_4022 0.44 -1.1
4,789,912 - Psyr_4022 0.44 +1.8
4,789,912 - Psyr_4022 0.44 +0.1
4,789,912 - Psyr_4022 0.44 +0.2
4,789,912 - Psyr_4022 0.44 +0.4
4,789,912 - Psyr_4022 0.44 +0.3
4,789,915 + Psyr_4022 0.44 -1.1
4,789,915 + Psyr_4022 0.44 +0.5
4,789,915 + Psyr_4022 0.44 +2.8
4,789,915 + Psyr_4022 0.44 +0.1
4,789,915 + Psyr_4022 0.44 -3.4
4,789,915 + Psyr_4022 0.44 -2.7
4,789,915 + Psyr_4022 0.44 +0.2
4,789,915 + Psyr_4022 0.44 -0.2
4,789,915 + Psyr_4022 0.44 -1.9
4,789,915 + Psyr_4022 0.44 -0.0
4,789,915 + Psyr_4022 0.44 +1.4
4,789,915 + Psyr_4022 0.44 -1.4
4,789,915 + Psyr_4022 0.44 +0.9
4,789,915 + Psyr_4022 0.44 -1.3
4,789,915 + Psyr_4022 0.44 -1.6
4,789,916 - Psyr_4022 0.44 +0.1
4,789,916 - Psyr_4022 0.44 -0.8
4,789,916 - Psyr_4022 0.44 -2.1
4,789,916 - Psyr_4022 0.44 -0.8
4,789,916 - Psyr_4022 0.44 +0.6
4,789,916 - Psyr_4022 0.44 -2.6
4,789,916 - Psyr_4022 0.44 +4.1
4,789,916 - Psyr_4022 0.44 +1.8
4,789,916 - Psyr_4022 0.44 -0.6
4,789,916 - Psyr_4022 0.44 -0.2
4,789,916 - Psyr_4022 0.44 -1.2
4,789,916 - Psyr_4022 0.44 +1.7
4,789,916 - Psyr_4022 0.44 -1.6
4,789,916 - Psyr_4022 0.44 +2.1
4,789,916 - Psyr_4022 0.44 -1.8
4,789,916 - Psyr_4022 0.44 +0.9
4,789,916 - Psyr_4022 0.44 -0.6
4,789,916 - Psyr_4022 0.44 +2.5
4,789,916 - Psyr_4022 0.44 -2.8
4,789,990 + Psyr_4022 0.52 +1.3
4,789,990 + Psyr_4022 0.52 -2.0
4,789,990 + Psyr_4022 0.52 +1.4
4,789,990 + Psyr_4022 0.52 -1.2
4,789,990 + Psyr_4022 0.52 -0.6
4,789,991 - Psyr_4022 0.52 +0.2
4,789,991 - Psyr_4022 0.52 +0.6
4,789,991 - Psyr_4022 0.52 -2.2
4,789,991 - Psyr_4022 0.52 +0.1
4,789,991 - Psyr_4022 0.52 -1.2
4,789,991 - Psyr_4022 0.52 +0.0
4,789,991 - Psyr_4022 0.52 -1.5
4,790,026 + Psyr_4022 0.56 -0.7
4,790,026 + Psyr_4022 0.56 +0.2
4,790,341 + Psyr_4022 0.88 +0.7
4,790,381 - +0.7
4,790,439 + +1.1
4,790,439 + -1.4
4,790,439 + -1.4
4,790,439 + +0.7
4,790,439 + +1.4
4,790,439 + -0.9
4,790,440 - +0.2
4,790,440 - +0.4
4,790,440 - -1.4
4,790,440 - +2.0
4,790,440 - -0.6
4,790,440 - +1.9
4,790,440 - +1.8
4,790,440 - +1.0
4,790,475 + -0.7
4,790,476 - +0.3

Or see this region's nucleotide sequence