Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3993

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,750,726	+		Psyr_3992	0.15	+0.3
4,750,726	+		Psyr_3992	0.15	-1.8
4,750,726	+		Psyr_3992	0.15	-0.9
4,750,726	+		Psyr_3992	0.15	-0.4
4,750,727	-		Psyr_3992	0.15	+2.1
4,750,727	-		Psyr_3992	0.15	-0.6
4,750,727	-		Psyr_3992	0.15	+2.9
4,750,727	-		Psyr_3992	0.15	-1.9
4,750,727	-		Psyr_3992	0.15	+1.4
4,750,727	-		Psyr_3992	0.15	-0.6
4,750,727	-		Psyr_3992	0.15	-0.2
4,750,727	-		Psyr_3992	0.15	+0.6
4,750,799	+		Psyr_3992	0.25	-1.5
4,750,800	-				+0.4
4,750,883	-		Psyr_3992	0.37	+0.8
4,751,282	-				-0.6
4,751,306	+				+0.2
4,751,306	+				-1.4
4,751,306	+				-2.0
4,751,306	+				-0.9
4,751,307	-				-0.6
4,751,307	-				-0.9
4,751,307	-				-1.1
4,751,307	-				-0.0
4,751,307	-				+1.5
4,751,307	-				-2.0
4,751,307	-				-1.4
4,751,307	-				+1.1
4,751,408	-				-2.7
4,751,438	-				-0.5
4,751,487	+				+0.0
4,751,488	-				+1.1
4,751,488	-				+1.2
4,751,488	-				+0.8
4,751,509	+				-0.7
4,751,531	-				+0.4
4,751,546	-				+1.4
4,751,546	-				+0.9
4,751,546	-				+0.9
4,751,596	+				+0.9
4,751,596	+				-2.0
4,751,596	+				-0.1
4,751,608	-				+1.0
4,751,608	-				+0.9
4,751,640	+				-2.1
4,751,641	-				+1.4
4,751,654	+				-0.8
4,751,654	+				+1.6
4,751,654	+				-0.3
4,751,655	-				-0.6
4,751,655	-				+0.6
4,751,718	+				-0.8
4,751,718	+				-2.5
4,751,718	+				-0.9
4,751,718	+				+1.2
4,751,718	+				+1.6
4,751,718	+				-0.9
4,751,718	+				-0.9
4,751,718	+				-0.5
4,751,719	-				-2.2
4,751,719	-				+2.3
4,751,719	-				+0.7
4,751,719	-				-0.2
4,751,719	-				+0.3
4,751,719	-				-1.8
4,751,808	+				+1.4
4,751,962	+		Psyr_3993	0.13	-1.8
4,752,114	+		Psyr_3993	0.20	-0.2
4,752,115	-		Psyr_3993	0.20	-0.8
4,752,169	+		Psyr_3993	0.22	-1.3
4,752,169	+		Psyr_3993	0.22	+2.5
4,752,169	+		Psyr_3993	0.22	+0.2
4,752,169	+		Psyr_3993	0.22	-2.2
4,752,170	-		Psyr_3993	0.22	+0.7
4,752,170	-		Psyr_3993	0.22	+0.2
4,752,170	-		Psyr_3993	0.22	-0.4
4,752,281	+		Psyr_3993	0.27	+1.6
4,752,281	+		Psyr_3993	0.27	+2.0
4,752,281	+		Psyr_3993	0.27	-0.8
4,752,298	+		Psyr_3993	0.28	-0.5
4,752,299	-		Psyr_3993	0.28	+0.7
4,752,299	-		Psyr_3993	0.28	-1.2
4,752,331	+		Psyr_3993	0.29	-2.2
4,752,331	+		Psyr_3993	0.29	+0.4
4,752,332	-		Psyr_3993	0.29	-1.2
4,752,332	-		Psyr_3993	0.29	-0.0
4,752,332	-		Psyr_3993	0.29	+0.3
4,752,332	-		Psyr_3993	0.29	-1.6
4,752,340	+		Psyr_3993	0.30	+0.5
4,752,341	-		Psyr_3993	0.30	+1.7
4,752,353	-		Psyr_3993	0.30	-1.5
4,752,605	-		Psyr_3993	0.41	+0.4
4,752,694	+		Psyr_3993	0.45	-0.8
4,752,694	+		Psyr_3993	0.45	-1.2
4,752,695	-		Psyr_3993	0.45	-2.5
4,752,763	+		Psyr_3993	0.48	-2.2
4,752,763	+		Psyr_3993	0.48	+0.8
4,752,763	+		Psyr_3993	0.48	-1.6
4,752,764	-		Psyr_3993	0.48	-0.8
4,752,764	-		Psyr_3993	0.48	+0.2
4,752,961	+		Psyr_3993	0.57	+3.0
4,752,961	+		Psyr_3993	0.57	+1.0
4,752,961	+		Psyr_3993	0.57	-0.6
4,752,961	+		Psyr_3993	0.57	-1.0
4,752,961	+		Psyr_3993	0.57	-1.6
4,752,961	+		Psyr_3993	0.57	+1.1
4,752,961	+		Psyr_3993	0.57	-0.5
4,752,961	+		Psyr_3993	0.57	-1.7
4,752,961	+		Psyr_3993	0.57	+1.4
4,752,961	+		Psyr_3993	0.57	+0.3
4,752,961	+		Psyr_3993	0.57	+0.6
4,752,962	-		Psyr_3993	0.57	-2.3
4,752,962	-		Psyr_3993	0.57	+0.4
4,752,962	-		Psyr_3993	0.57	-0.9
4,753,006	+		Psyr_3993	0.59	+0.3
4,753,051	+		Psyr_3993	0.61	+0.2
4,753,051	+		Psyr_3993	0.61	+0.4
4,753,051	+		Psyr_3993	0.61	+0.4
4,753,052	-		Psyr_3993	0.61	-0.5
4,753,052	-		Psyr_3993	0.61	+1.1
4,753,076	+		Psyr_3993	0.62	-1.6
4,753,077	-		Psyr_3993	0.62	+0.5
4,753,077	-		Psyr_3993	0.62	+0.8
4,753,077	-		Psyr_3993	0.62	+1.7
4,753,077	-		Psyr_3993	0.62	-0.7
4,753,385	+		Psyr_3993	0.76	-1.8
4,753,385	+		Psyr_3993	0.76	-1.6
4,753,385	+		Psyr_3993	0.76	+0.4
4,753,386	-		Psyr_3993	0.76	-1.0
4,753,386	-		Psyr_3993	0.76	-0.3
4,753,400	-		Psyr_3993	0.76	-0.4
4,753,459	+		Psyr_3993	0.79	-0.8
4,753,459	+		Psyr_3993	0.79	-0.6
4,753,460	-		Psyr_3993	0.79	+1.6
4,753,460	-		Psyr_3993	0.79	+0.3
4,753,462	+		Psyr_3993	0.79	-1.4
4,753,462	+		Psyr_3993	0.79	-0.3
4,753,462	+		Psyr_3993	0.79	-1.9
4,753,462	+		Psyr_3993	0.79	+0.0
4,753,462	+		Psyr_3993	0.79	-0.1
4,753,462	+		Psyr_3993	0.79	+0.5
4,753,462	+		Psyr_3993	0.79	-1.4
4,753,463	-		Psyr_3993	0.79	-0.5
4,753,463	-		Psyr_3993	0.79	+2.9
4,753,513	+		Psyr_3993	0.81	+0.2
4,753,513	+		Psyr_3993	0.81	+0.4
4,753,514	-		Psyr_3993	0.81	+2.2
4,753,514	-		Psyr_3993	0.81	+0.4
4,753,514	-		Psyr_3993	0.81	+0.1
4,753,514	-		Psyr_3993	0.81	-0.4
4,753,526	-		Psyr_3993	0.82	-0.9
4,753,576	+		Psyr_3993	0.84	+0.1
4,753,576	+		Psyr_3993	0.84	-0.5
4,753,576	+		Psyr_3993	0.84	+1.4
4,753,576	+		Psyr_3993	0.84	-1.6
4,753,576	+		Psyr_3993	0.84	-1.6
4,753,577	-		Psyr_3993	0.84	-0.6
4,753,577	-		Psyr_3993	0.84	+1.4
4,753,577	-		Psyr_3993	0.84	+0.7
4,753,702	+		Psyr_3993	0.90	+0.8
4,753,702	+		Psyr_3993	0.90	-1.9
4,753,702	+		Psyr_3993	0.90	-1.1
4,753,702	+		Psyr_3993	0.90	-1.4
4,753,703	-		Psyr_3993	0.90	+0.9
4,753,703	-		Psyr_3993	0.90	-0.5
4,753,703	-		Psyr_3993	0.90	-1.4
4,753,703	-		Psyr_3993	0.90	-0.4
4,753,703	-		Psyr_3993	0.90	+1.1
4,753,831	+				-2.5
4,753,832	-				+0.1
4,753,832	-				+0.6
4,753,832	-				+0.1
4,753,832	-				-1.6
4,753,832	-				-3.5
4,753,832	-				-1.4
4,753,931	-				-0.8
4,754,038	+				+0.6
4,754,038	+				-2.8
4,754,039	-				+2.2
4,754,152	+				-1.8
4,754,152	+				+0.8
4,754,152	+				-0.1
4,754,152	+				+3.3
4,754,153	-				+0.9
4,754,153	-				-1.8
4,754,153	-				-2.5
4,754,153	-				-1.2
4,754,153	-				-3.3
4,754,153	-				+0.6
4,754,153	-				+0.2
4,754,261	+		Psyr_3994	0.15	+0.4
4,754,261	+		Psyr_3994	0.15	-0.5
4,754,261	+		Psyr_3994	0.15	-1.8
4,754,261	+		Psyr_3994	0.15	+3.5
4,754,261	+		Psyr_3994	0.15	-1.2
4,754,262	-		Psyr_3994	0.15	-2.4
4,754,262	-		Psyr_3994	0.15	-2.5
4,754,262	-		Psyr_3994	0.15	+1.3
4,754,383	+		Psyr_3994	0.22	+1.1
4,754,383	+		Psyr_3994	0.22	+1.4
4,754,383	+		Psyr_3994	0.22	-2.1
4,754,383	+		Psyr_3994	0.22	+0.6
4,754,383	+		Psyr_3994	0.22	+0.0
4,754,383	+		Psyr_3994	0.22	-0.3
4,754,383	+		Psyr_3994	0.22	-0.6
4,754,383	+		Psyr_3994	0.22	+0.3
4,754,384	-		Psyr_3994	0.22	-1.9
4,754,384	-				+0.4
4,754,384	-		Psyr_3994	0.22	-1.3
4,754,384	-		Psyr_3994	0.22	-1.0
4,754,384	-		Psyr_3994	0.22	-0.6
4,754,384	-		Psyr_3994	0.22	+0.2
4,754,384	-		Psyr_3994	0.22	+0.2
4,754,384	-		Psyr_3994	0.22	+1.5
4,754,384	-		Psyr_3994	0.22	+0.8
4,754,384	-		Psyr_3994	0.22	-0.1
4,754,384	-		Psyr_3994	0.22	-1.0
4,754,384	-		Psyr_3994	0.22	-0.2
4,754,384	-		Psyr_3994	0.22	-0.4
4,754,384	-		Psyr_3994	0.22	-0.2
4,754,384	-		Psyr_3994	0.22	-0.6
4,754,384	-		Psyr_3994	0.22	-2.8
4,754,399	-		Psyr_3994	0.23	-3.1
4,754,399	-		Psyr_3994	0.23	+0.4
4,754,399	-		Psyr_3994	0.23	+0.3
4,754,399	-		Psyr_3994	0.23	+0.4
4,754,399	-		Psyr_3994	0.23	-0.3
4,754,399	-		Psyr_3994	0.23	-2.2
4,754,414	-		Psyr_3994	0.23	+1.2
4,754,414	-		Psyr_3994	0.23	+1.2
4,754,414	-		Psyr_3994	0.23	-1.9
4,754,414	-		Psyr_3994	0.23	+0.5
4,754,514	+		Psyr_3994	0.29	+0.9
4,754,726	+		Psyr_3994	0.41	+1.4
4,754,726	+		Psyr_3994	0.41	+1.5
4,754,727	-		Psyr_3994	0.41	-1.0
4,754,727	-		Psyr_3994	0.41	+0.7
4,754,727	-		Psyr_3994	0.41	-0.4
4,754,727	-		Psyr_3994	0.41	-0.5
4,754,815	+		Psyr_3994	0.46	-2.1
4,754,815	+		Psyr_3994	0.46	+1.0
4,754,815	+		Psyr_3994	0.46	+0.4