Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3989

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,746,748	+		Psyr_3988	0.48	+1.0
4,746,748	+		Psyr_3988	0.48	-1.8
4,746,749	-		Psyr_3988	0.48	+0.9
4,746,749	-		Psyr_3988	0.48	-2.4
4,746,772	+		Psyr_3988	0.49	-0.8
4,746,773	-		Psyr_3988	0.50	+1.7
4,746,869	+		Psyr_3988	0.57	+2.3
4,746,870	-		Psyr_3988	0.57	+1.6
4,746,964	+		Psyr_3988	0.65	-0.6
4,747,184	-		Psyr_3988	0.83	+0.4
4,747,184	-		Psyr_3988	0.83	-2.6
4,747,270	+				+0.8
4,747,270	+				-1.5
4,747,270	+				-3.4
4,747,271	-				-0.7
4,747,377	-				-0.9
4,747,377	-				+1.1
4,747,377	-				+1.8
4,747,487	-				-2.6
4,747,487	-				+0.5
4,747,509	+				-0.1
4,747,509	+				+0.9
4,747,509	-				-0.2
4,747,596	+				-1.9
4,747,596	+				-1.6
4,747,597	-				-0.2
4,747,597	-				+0.6
4,747,597	-				-0.6
4,747,599	-				-0.5
4,747,599	-				-1.5
4,747,615	+				-1.8
4,747,616	-				-2.1
4,747,617	+				-1.8
4,747,617	+				+1.5
4,747,617	+				-1.6
4,747,618	-				-1.6
4,747,618	-				-0.4
4,747,618	-				+1.3
4,747,618	-				+1.3
4,747,621	+				+0.1
4,747,630	-				+0.5
4,747,662	-				+0.1
4,747,662	-				+0.6
4,747,684	+				+0.4
4,747,684	+				+0.6
4,747,684	+				-1.9
4,747,684	+				-0.2
4,747,685	-				+0.8
4,747,685	-				-2.8
4,747,685	-				+2.9
4,747,738	-				-1.5
4,747,746	+				-1.7
4,747,751	+				+0.4
4,747,751	+				+0.1
4,747,752	-				+2.0
4,747,752	-				-2.2
4,747,752	-				-2.9
4,747,762	+				-0.8
4,747,762	+				+1.5
4,747,762	+				-0.4
4,747,762	+				+0.4
4,747,763	-				-0.3
4,747,763	-				+0.7
4,747,764	+				+0.8
4,747,765	-				-0.0
4,747,765	-				-1.6
4,747,765	-				-0.5
4,747,841	+		Psyr_3989	0.13	-2.7
4,747,903	+		Psyr_3989	0.18	-0.9
4,747,904	-		Psyr_3989	0.18	-3.0
4,747,904	-		Psyr_3989	0.18	+0.9
4,747,904	-		Psyr_3989	0.18	+1.2
4,747,912	+		Psyr_3989	0.19	+0.6
4,747,933	+		Psyr_3989	0.20	+1.2
4,747,934	-		Psyr_3989	0.20	-0.6
4,747,952	+		Psyr_3989	0.22	+2.4
4,747,952	+		Psyr_3989	0.22	-0.9
4,747,953	-		Psyr_3989	0.22	-0.6
4,747,953	-		Psyr_3989	0.22	+1.2
4,747,953	-		Psyr_3989	0.22	+0.9
4,747,953	-		Psyr_3989	0.22	-0.4
4,747,953	-		Psyr_3989	0.22	+2.6
4,747,953	-		Psyr_3989	0.22	+0.2
4,748,075	+		Psyr_3989	0.32	+1.1
4,748,075	+		Psyr_3989	0.32	-0.6
4,748,075	+		Psyr_3989	0.32	+0.6
4,748,075	+		Psyr_3989	0.32	-1.8
4,748,075	+		Psyr_3989	0.32	+1.7
4,748,076	-		Psyr_3989	0.32	+1.6
4,748,076	-		Psyr_3989	0.32	-2.1
4,748,076	-		Psyr_3989	0.32	-3.3
4,748,076	-		Psyr_3989	0.32	-2.4
4,748,076	-		Psyr_3989	0.32	-1.8
4,748,076	-		Psyr_3989	0.32	+1.5
4,748,149	+		Psyr_3989	0.38	+1.3
4,748,150	-		Psyr_3989	0.38	-1.4
4,748,233	-		Psyr_3989	0.45	+1.4
4,748,279	-		Psyr_3989	0.49	+0.8
4,748,279	-		Psyr_3989	0.49	+1.9
4,748,327	-		Psyr_3989	0.53	+0.3
4,748,331	+		Psyr_3989	0.53	+1.9
4,748,331	+		Psyr_3989	0.53	-0.2
4,748,331	+		Psyr_3989	0.53	-3.7
4,748,331	+		Psyr_3989	0.53	-3.4
4,748,331	+		Psyr_3989	0.53	-0.3
4,748,409	+		Psyr_3989	0.59	+0.5
4,748,409	+		Psyr_3989	0.59	+1.2
4,748,409	+		Psyr_3989	0.59	-0.4
4,748,409	+		Psyr_3989	0.59	-0.8
4,748,409	+		Psyr_3989	0.59	+0.9
4,748,409	+		Psyr_3989	0.59	+2.0
4,748,410	-		Psyr_3989	0.59	-0.1
4,748,410	-		Psyr_3989	0.59	+0.3
4,748,410	-		Psyr_3989	0.59	-0.2
4,748,429	+		Psyr_3989	0.61	+1.2
4,748,429	+		Psyr_3989	0.61	+1.7
4,748,430	-		Psyr_3989	0.61	+0.7
4,748,430	-		Psyr_3989	0.61	-2.3
4,748,430	-		Psyr_3989	0.61	-0.9
4,748,430	-		Psyr_3989	0.61	-1.9
4,748,430	-		Psyr_3989	0.61	-1.4
4,748,430	-		Psyr_3989	0.61	-2.8
4,748,431	+		Psyr_3989	0.61	-2.4
4,748,431	+		Psyr_3989	0.61	-1.2
4,748,432	-		Psyr_3989	0.61	+0.6
4,748,625	+		Psyr_3989	0.77	+0.4
4,748,638	+		Psyr_3989	0.78	+0.6
4,748,638	+		Psyr_3989	0.78	-1.2
4,748,644	+		Psyr_3989	0.79	+0.4
4,748,691	+		Psyr_3989	0.82	-1.1
4,748,691	+		Psyr_3989	0.82	-1.3
4,748,691	+		Psyr_3989	0.82	+1.1
4,748,691	+		Psyr_3989	0.82	-0.5
4,748,691	+		Psyr_3989	0.82	+2.0
4,748,692	-		Psyr_3989	0.82	+1.2
4,748,692	-		Psyr_3989	0.82	+0.8
4,748,692	-		Psyr_3989	0.82	-1.8
4,748,692	-		Psyr_3989	0.82	-1.2
4,748,692	-		Psyr_3989	0.82	-2.6
4,748,711	+		Psyr_3989	0.84	+0.3
4,748,711	+		Psyr_3989	0.84	+0.1
4,748,711	+		Psyr_3989	0.84	+1.4
4,748,711	+		Psyr_3989	0.84	+0.9
4,748,711	+		Psyr_3989	0.84	+3.2
4,748,711	+		Psyr_3989	0.84	-1.9
4,748,711	+		Psyr_3989	0.84	-3.5
4,748,712	-		Psyr_3989	0.84	+0.7
4,748,712	-		Psyr_3989	0.84	-3.0
4,748,712	-		Psyr_3989	0.84	-0.0
4,748,712	-		Psyr_3989	0.84	-2.1
4,748,712	-		Psyr_3989	0.84	-2.7
4,748,712	-		Psyr_3989	0.84	-0.2
4,748,712	-		Psyr_3989	0.84	+0.1
4,748,777	-		Psyr_3989	0.89	+1.4
4,748,777	-		Psyr_3989	0.89	+1.0
4,748,815	-				+0.2
4,748,836	-				+0.7
4,748,985	+				+0.2
4,748,986	-				+1.6
4,749,003	+				+1.4
4,749,003	+				-1.2
4,749,003	+				-2.9
4,749,004	-				+0.2
4,749,004	-				+0.4
4,749,004	-				+1.8
4,749,113	+		Psyr_3990	0.20	+2.2
4,749,113	+		Psyr_3990	0.20	-0.9
4,749,113	+		Psyr_3990	0.20	+1.1
4,749,113	+		Psyr_3990	0.20	-0.9
4,749,113	+		Psyr_3990	0.20	-0.1
4,749,114	-		Psyr_3990	0.20	-0.5
4,749,114	-		Psyr_3990	0.20	+0.8
4,749,114	-		Psyr_3990	0.20	+1.1
4,749,114	-		Psyr_3990	0.20	+0.8
4,749,114	-		Psyr_3990	0.20	-1.6
4,749,114	-		Psyr_3990	0.20	-2.5
4,749,114	-		Psyr_3990	0.20	+1.0
4,749,303	+		Psyr_3990	0.39	+0.8
4,749,304	-		Psyr_3990	0.39	+0.2
4,749,315	-		Psyr_3990	0.40	+0.3
4,749,315	-		Psyr_3990	0.40	+1.3
4,749,350	+		Psyr_3990	0.44	-0.9
4,749,350	+		Psyr_3990	0.44	-1.2
4,749,350	+		Psyr_3990	0.44	-1.6
4,749,350	+		Psyr_3990	0.44	+0.2
4,749,350	+		Psyr_3990	0.44	-1.4
4,749,350	+		Psyr_3990	0.44	-1.9
4,749,350	+		Psyr_3990	0.44	+0.2
4,749,350	+		Psyr_3990	0.44	-0.6
4,749,350	+		Psyr_3990	0.44	+2.6
4,749,350	+		Psyr_3990	0.44	+0.9
4,749,350	+		Psyr_3990	0.44	-1.3
4,749,351	-		Psyr_3990	0.44	+0.5
4,749,351	-		Psyr_3990	0.44	-1.2
4,749,351	-		Psyr_3990	0.44	+0.1
4,749,351	-		Psyr_3990	0.44	+1.4
4,749,351	-		Psyr_3990	0.44	+1.5
4,749,351	-		Psyr_3990	0.44	+1.0
4,749,351	-		Psyr_3990	0.44	+0.5
4,749,351	-		Psyr_3990	0.44	+0.6
4,749,351	-		Psyr_3990	0.44	-2.1
4,749,351	-		Psyr_3990	0.44	-0.4
4,749,351	-		Psyr_3990	0.44	+0.8
4,749,447	+		Psyr_3990	0.53	+0.1
4,749,447	+		Psyr_3990	0.53	+1.1
4,749,448	-		Psyr_3990	0.53	+0.4
4,749,457	+		Psyr_3990	0.54	-0.9
4,749,457	+		Psyr_3990	0.54	-1.8
4,749,457	+		Psyr_3990	0.54	-2.6
4,749,466	+		Psyr_3990	0.55	-1.4
4,749,467	-		Psyr_3990	0.55	+0.8
4,749,501	+		Psyr_3990	0.59	-1.6
4,749,502	-		Psyr_3990	0.59	+0.4
4,749,613	+		Psyr_3990	0.70	-1.9
4,749,613	+		Psyr_3990	0.70	+0.6
4,749,613	+		Psyr_3990	0.70	-0.9
4,749,613	+		Psyr_3990	0.70	-0.2
4,749,613	+		Psyr_3990	0.70	-0.1
4,749,613	+		Psyr_3990	0.70	+1.5
4,749,613	+		Psyr_3990	0.70	-2.6
4,749,614	-		Psyr_3990	0.70	-0.7
4,749,614	-		Psyr_3990	0.70	-0.1
4,749,614	-		Psyr_3990	0.70	-0.5
4,749,655	+		Psyr_3990	0.74	+1.3
4,749,656	-		Psyr_3990	0.74	-0.4
4,749,658	-		Psyr_3990	0.74	-2.3
4,749,803	-		Psyr_3990	0.89	-0.3
4,749,803	-		Psyr_3990	0.89	+0.1
4,749,803	-		Psyr_3990	0.89	-0.5
4,749,803	-		Psyr_3990	0.89	+1.8
4,749,803	-		Psyr_3990	0.89	+0.5
4,749,880	+				-0.3
4,749,880	+				-0.0
4,749,880	+				+0.2
4,749,881	-				-0.7
4,749,881	-				-1.7
4,749,884	+				-3.7
4,749,885	-				-0.6
4,749,885	-				-1.2
4,749,885	-				+0.7
4,749,885	-				-1.4
4,749,885	-				-1.4
4,749,885	-				+0.8
4,749,885	-				-2.0
4,749,895	+				+1.9
4,749,895	+				+2.3