Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3537

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,214,230	+		Psyr_3535	0.54	-0.2
4,214,230	+		Psyr_3535	0.54	-3.0
4,214,230	+		Psyr_3535	0.54	-2.8
4,214,231	-		Psyr_3535	0.54	-1.1
4,214,231	-		Psyr_3535	0.54	+0.8
4,214,231	-		Psyr_3535	0.54	-0.7
4,214,476	+		Psyr_3535	0.85	+1.4
4,214,477	-		Psyr_3535	0.85	+0.4
4,214,477	-		Psyr_3535	0.85	+1.1
4,214,525	+				-0.4
4,214,525	+				+1.6
4,214,525	+				+0.9
4,214,525	+				-1.7
4,214,563	+				-0.8
4,214,564	-				-0.5
4,214,574	+				+0.2
4,214,575	-				+1.2
4,214,575	-				-0.8
4,214,575	-				+0.7
4,214,575	-				+1.2
4,214,575	-				-1.2
4,214,646	+		Psyr_3536	0.20	-0.8
4,214,674	+		Psyr_3536	0.27	+0.1
4,214,674	+		Psyr_3536	0.27	+0.1
4,214,674	+		Psyr_3536	0.27	-0.4
4,214,674	+		Psyr_3536	0.27	-1.8
4,214,675	-		Psyr_3536	0.27	+0.3
4,214,710	-		Psyr_3536	0.35	-1.2
4,214,755	+		Psyr_3536	0.46	-0.1
4,214,756	-		Psyr_3536	0.46	-0.3
4,214,756	-		Psyr_3536	0.46	-1.7
4,214,756	-		Psyr_3536	0.46	-1.4
4,214,834	+		Psyr_3536	0.65	-2.5
4,214,835	-		Psyr_3536	0.65	-1.8
4,214,871	+		Psyr_3536	0.74	-2.2
4,214,872	-		Psyr_3536	0.74	+0.0
4,214,872	-		Psyr_3536	0.74	-0.1
4,214,972	+				-3.5
4,215,126	+				-0.4
4,215,127	-				+0.8
4,215,127	-				+0.6
4,215,149	+				-2.0
4,215,159	-				-0.5
4,215,239	-				+0.5
4,215,285	+				-1.0
4,215,311	-		Psyr_3537	0.13	-0.2
4,215,417	-		Psyr_3537	0.25	+0.3
4,215,472	+		Psyr_3537	0.32	+0.2
4,215,472	+		Psyr_3537	0.32	-0.2
4,215,472	+		Psyr_3537	0.32	+0.4
4,215,473	-		Psyr_3537	0.32	+0.7
4,215,511	+		Psyr_3537	0.36	+0.5
4,215,511	+		Psyr_3537	0.36	-2.0
4,215,511	+		Psyr_3537	0.36	-0.5
4,215,511	+		Psyr_3537	0.36	-0.9
4,215,511	+		Psyr_3537	0.36	-2.4
4,215,512	-		Psyr_3537	0.36	-0.8
4,215,522	+		Psyr_3537	0.37	+1.6
4,215,523	-		Psyr_3537	0.38	-0.6
4,215,523	-		Psyr_3537	0.38	-1.7
4,215,523	-		Psyr_3537	0.38	-0.9
4,215,523	-		Psyr_3537	0.38	-2.4
4,215,681	+		Psyr_3537	0.56	+0.2
4,215,681	+		Psyr_3537	0.56	+2.9
4,215,681	+		Psyr_3537	0.56	+0.6
4,215,681	+		Psyr_3537	0.56	-1.4
4,215,682	-		Psyr_3537	0.56	-1.9
4,215,682	-		Psyr_3537	0.56	+2.0
4,215,682	-		Psyr_3537	0.56	-2.2
4,215,682	-		Psyr_3537	0.56	+1.7
4,215,788	+		Psyr_3537	0.68	-1.4
4,215,818	+		Psyr_3537	0.72	+0.4
4,215,818	+		Psyr_3537	0.72	-1.0
4,215,818	+		Psyr_3537	0.72	+1.4
4,215,818	+		Psyr_3537	0.72	-1.4
4,215,819	-		Psyr_3537	0.72	-0.2
4,215,819	-		Psyr_3537	0.72	-0.2
4,215,819	-		Psyr_3537	0.72	-1.1
4,215,848	+		Psyr_3537	0.75	-1.7
4,215,848	+		Psyr_3537	0.75	+1.7
4,215,848	+		Psyr_3537	0.75	+1.0
4,215,848	+		Psyr_3537	0.75	+0.7
4,215,848	+		Psyr_3537	0.75	+2.0
4,215,848	+		Psyr_3537	0.75	-1.7
4,215,848	+		Psyr_3537	0.75	-0.8
4,215,848	+		Psyr_3537	0.75	+0.9
4,215,848	+		Psyr_3537	0.75	+0.2
4,215,848	+		Psyr_3537	0.75	-2.4
4,215,848	+		Psyr_3537	0.75	-3.1
4,215,848	+		Psyr_3537	0.75	-1.6
4,215,848	+		Psyr_3537	0.75	-1.2
4,215,848	+		Psyr_3537	0.75	+0.5
4,215,848	+		Psyr_3537	0.75	+1.9
4,215,848	+		Psyr_3537	0.75	+1.7
4,215,849	-		Psyr_3537	0.75	-1.7
4,215,849	-		Psyr_3537	0.75	-2.0
4,215,849	-		Psyr_3537	0.75	+0.4
4,215,849	-		Psyr_3537	0.75	+1.2
4,215,849	-		Psyr_3537	0.75	+0.6
4,215,849	-		Psyr_3537	0.75	-2.2
4,215,849	-		Psyr_3537	0.75	+1.7
4,215,849	-		Psyr_3537	0.75	+1.8
4,215,849	-		Psyr_3537	0.75	-3.0
4,215,849	-		Psyr_3537	0.75	-2.0
4,215,849	-		Psyr_3537	0.75	-0.2
4,215,849	-		Psyr_3537	0.75	-0.8
4,215,971	+		Psyr_3537	0.89	-0.1
4,216,034	-				-0.4
4,216,100	+				+1.4
4,216,150	+				-0.2
4,216,150	+				+0.8
4,216,151	-				-2.4
4,216,167	+				+1.5
4,216,167	+				+0.3
4,216,177	+				-0.8
4,216,177	+				-0.4
4,216,177	+				-0.6
4,216,177	+				-1.9
4,216,177	+				+1.0
4,216,178	-				-0.3
4,216,178	-				-1.4
4,216,178	-				+0.1
4,216,178	-				-2.5
4,216,178	-				-2.7
4,216,178	-				+1.3
4,216,178	-				-1.5
4,216,178	-				+2.3
4,216,178	-				-0.6
4,216,178	-				+1.2
4,216,178	-				-0.8
4,216,178	-				-0.9
4,216,207	+				+0.5
4,216,207	+				-1.2
4,216,207	+				+1.9
4,216,208	-				+2.4
4,216,387	+		Psyr_3538	0.34	+0.4
4,216,388	-		Psyr_3538	0.34	+0.2
4,216,388	-		Psyr_3538	0.34	+2.0
4,216,462	+		Psyr_3538	0.47	+1.2
4,216,462	+		Psyr_3538	0.47	-0.4
4,216,463	-		Psyr_3538	0.47	-1.8
4,216,463	-		Psyr_3538	0.47	+0.4
4,216,463	-		Psyr_3538	0.47	+0.5
4,216,466	+		Psyr_3538	0.47	+2.4
4,216,466	+		Psyr_3538	0.47	+1.9
4,216,466	+		Psyr_3538	0.47	-0.1
4,216,466	+		Psyr_3538	0.47	-0.2
4,216,467	-		Psyr_3538	0.48	-1.0
4,216,467	-		Psyr_3538	0.48	-0.3
4,216,467	-		Psyr_3538	0.48	-3.5
4,216,467	-		Psyr_3538	0.48	+1.2
4,216,467	-		Psyr_3538	0.48	+0.5
4,216,520	+		Psyr_3538	0.56	-3.2
4,216,520	+		Psyr_3538	0.56	-1.8
4,216,521	-		Psyr_3538	0.57	-1.2
4,216,545	+		Psyr_3538	0.61	+0.0
4,216,545	+		Psyr_3538	0.61	+0.2
4,216,545	+		Psyr_3538	0.61	+2.0
4,216,546	-		Psyr_3538	0.61	+1.2
4,216,546	-		Psyr_3538	0.61	+0.2
4,216,560	+		Psyr_3538	0.63	+0.3
4,216,561	-		Psyr_3538	0.63	-1.4
4,216,561	-		Psyr_3538	0.63	+1.5
4,216,610	-		Psyr_3538	0.71	+2.2
4,216,691	+		Psyr_3538	0.85	+1.2
4,216,792	+				+0.8
4,217,022	+				+0.1
4,217,023	-				-0.5
4,217,023	-				+1.2
4,217,028	+				+0.3
4,217,028	+				-2.3
4,217,028	+				-2.6
4,217,028	+				+1.4
4,217,028	+				-0.7
4,217,028	+				-0.8
4,217,029	-				-1.0
4,217,029	-				-0.8
4,217,029	-				+1.2
4,217,029	-				-0.8
4,217,029	-				-0.8
4,217,029	-				+1.2
4,217,029	-				+1.0