Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3471

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,139,472	+		Psyr_3470	0.43	+0.2
4,139,620	+		Psyr_3470	0.52	+0.4
4,139,620	+		Psyr_3470	0.52	-0.1
4,139,621	-		Psyr_3470	0.53	+0.3
4,139,621	-		Psyr_3470	0.53	+2.1
4,139,689	+		Psyr_3470	0.57	+0.5
4,139,690	-		Psyr_3470	0.57	+1.5
4,139,710	-		Psyr_3470	0.58	-0.5
4,139,721	+		Psyr_3470	0.59	+2.5
4,139,721	+		Psyr_3470	0.59	+0.9
4,139,721	+		Psyr_3470	0.59	+0.5
4,139,721	+		Psyr_3470	0.59	-0.3
4,139,721	+		Psyr_3470	0.59	+0.9
4,139,721	+		Psyr_3470	0.59	+2.5
4,139,721	+		Psyr_3470	0.59	+1.6
4,139,722	-		Psyr_3470	0.59	-0.3
4,139,722	-		Psyr_3470	0.59	+1.4
4,139,722	-		Psyr_3470	0.59	-0.5
4,139,722	-		Psyr_3470	0.59	+1.5
4,139,722	-		Psyr_3470	0.59	-1.0
4,139,722	-		Psyr_3470	0.59	+2.5
4,139,722	-		Psyr_3470	0.59	+1.3
4,139,803	+		Psyr_3470	0.64	+0.8
4,139,804	-		Psyr_3470	0.64	-1.3
4,139,804	-		Psyr_3470	0.64	+2.0
4,139,910	+		Psyr_3470	0.71	+0.1
4,139,911	-		Psyr_3470	0.71	-2.5
4,139,911	-		Psyr_3470	0.71	-1.5
4,139,911	-		Psyr_3470	0.71	+2.8
4,139,916	+		Psyr_3470	0.71	-1.6
4,139,917	-		Psyr_3470	0.71	-1.2
4,139,917	-		Psyr_3470	0.71	-1.2
4,139,917	-		Psyr_3470	0.71	-1.7
4,139,917	-		Psyr_3470	0.71	-0.9
4,139,972	+		Psyr_3470	0.75	-0.5
4,139,972	+		Psyr_3470	0.75	+1.2
4,139,972	+		Psyr_3470	0.75	-0.0
4,139,973	-		Psyr_3470	0.75	-1.4
4,139,973	-		Psyr_3470	0.75	+1.1
4,139,973	-		Psyr_3470	0.75	+1.1
4,139,973	-		Psyr_3470	0.75	+0.2
4,139,973	-		Psyr_3470	0.75	+1.0
4,139,973	-		Psyr_3470	0.75	-0.9
4,139,973	-		Psyr_3470	0.75	+0.1
4,139,973	-		Psyr_3470	0.75	-2.5
4,139,973	-		Psyr_3470	0.75	-1.5
4,139,976	+		Psyr_3470	0.75	+3.0
4,139,977	-		Psyr_3470	0.75	+0.6
4,139,977	-		Psyr_3470	0.75	+0.9
4,139,977	-		Psyr_3470	0.75	-2.2
4,139,977	-		Psyr_3470	0.75	+1.5
4,139,977	-		Psyr_3470	0.75	+1.1
4,140,318	+				-2.1
4,140,318	+				+0.2
4,140,318	+				+1.6
4,140,319	-				-0.1
4,140,319	-				+0.5
4,140,319	-				-0.9
4,140,323	-				-2.2
4,140,323	-				+0.7
4,140,330	+				-1.7
4,140,330	+				+0.9
4,140,361	+				-1.2
4,140,370	+				+1.0
4,140,370	+				+0.0
4,140,371	-				+0.1
4,140,391	+				+1.3
4,140,457	+				-0.2
4,140,457	+				-1.8
4,140,457	+				-1.5
4,140,457	+				+2.4
4,140,457	+				-0.9
4,140,457	+				+0.2
4,140,458	-				-0.3
4,140,458	-				+0.4
4,140,458	-				-0.2
4,140,458	-				-1.7
4,140,458	-				-2.5
4,140,458	-				+1.3
4,140,460	+				-1.2
4,140,461	-				+2.6
4,140,469	+				+3.2
4,140,504	+				-0.9
4,140,505	-				+1.1
4,140,597	+		Psyr_3471	0.10	+0.3
4,140,597	+		Psyr_3471	0.10	-2.4
4,140,597	+		Psyr_3471	0.10	+1.5
4,140,597	+		Psyr_3471	0.10	+0.8
4,140,597	+		Psyr_3471	0.10	+1.5
4,140,597	+		Psyr_3471	0.10	+1.3
4,140,598	-		Psyr_3471	0.10	+1.1
4,140,598	-		Psyr_3471	0.10	+0.4
4,140,606	+		Psyr_3471	0.10	+0.6
4,140,607	-		Psyr_3471	0.11	+1.9
4,140,607	-		Psyr_3471	0.11	-3.0
4,140,611	+		Psyr_3471	0.11	+0.5
4,140,612	-		Psyr_3471	0.11	-0.7
4,140,612	-		Psyr_3471	0.11	-2.7
4,140,619	+		Psyr_3471	0.11	-1.1
4,140,619	+		Psyr_3471	0.11	+0.2
4,140,620	-		Psyr_3471	0.11	+1.6
4,140,804	-		Psyr_3471	0.20	-2.6
4,140,832	+		Psyr_3471	0.21	+1.0
4,140,940	+		Psyr_3471	0.27	-2.5
4,140,940	+		Psyr_3471	0.27	+0.0
4,140,940	+		Psyr_3471	0.27	-1.0
4,140,940	+		Psyr_3471	0.27	+1.3
4,140,940	+		Psyr_3471	0.27	-0.2
4,140,940	+		Psyr_3471	0.27	+0.7
4,140,940	+		Psyr_3471	0.27	-2.7
4,140,940	+		Psyr_3471	0.27	-0.2
4,140,940	+		Psyr_3471	0.27	+0.5
4,140,941	-		Psyr_3471	0.27	-0.3
4,140,941	-		Psyr_3471	0.27	-1.1
4,140,941	-		Psyr_3471	0.27	+1.7
4,140,941	-		Psyr_3471	0.27	-1.0
4,140,941	-		Psyr_3471	0.27	+1.3
4,140,941	-		Psyr_3471	0.27	-3.3
4,140,941	-		Psyr_3471	0.27	+3.9
4,140,941	-		Psyr_3471	0.27	+0.5
4,140,941	-		Psyr_3471	0.27	+1.6
4,140,941	-		Psyr_3471	0.27	-1.2
4,140,941	-		Psyr_3471	0.27	-1.7
4,140,941	-		Psyr_3471	0.27	-2.8
4,141,039	+		Psyr_3471	0.31	+0.4
4,141,039	+		Psyr_3471	0.31	+0.6
4,141,039	+		Psyr_3471	0.31	-2.9
4,141,040	-		Psyr_3471	0.32	-0.6
4,141,040	-		Psyr_3471	0.32	+0.6
4,141,040	-		Psyr_3471	0.32	-0.5
4,141,040	-		Psyr_3471	0.32	-0.3
4,141,040	-		Psyr_3471	0.32	+3.0
4,141,040	-		Psyr_3471	0.32	-0.0
4,141,040	-		Psyr_3471	0.32	-1.7
4,141,040	-		Psyr_3471	0.32	+2.5
4,141,040	-		Psyr_3471	0.32	+2.8
4,141,224	-		Psyr_3471	0.40	-3.6
4,141,481	-		Psyr_3471	0.53	+1.3
4,141,641	+		Psyr_3471	0.61	-1.2
4,141,690	+		Psyr_3471	0.63	+2.4
4,141,691	-		Psyr_3471	0.63	-2.1
4,141,691	-		Psyr_3471	0.63	+2.7
4,141,691	-		Psyr_3471	0.63	-1.2
4,141,691	-		Psyr_3471	0.63	+1.3
4,141,691	-		Psyr_3471	0.63	-0.6
4,141,733	-		Psyr_3471	0.65	-2.5
4,141,733	-		Psyr_3471	0.65	-0.6
4,141,774	+		Psyr_3471	0.67	+2.6
4,141,774	+		Psyr_3471	0.67	+4.1
4,141,774	+		Psyr_3471	0.67	-2.7
4,141,774	+		Psyr_3471	0.67	-1.1
4,141,774	+		Psyr_3471	0.67	-0.9
4,141,774	+		Psyr_3471	0.67	+2.3
4,141,774	+		Psyr_3471	0.67	-0.4
4,141,775	-		Psyr_3471	0.67	-0.4
4,141,775	-		Psyr_3471	0.67	+0.1
4,141,775	-		Psyr_3471	0.67	+1.0
4,141,775	-		Psyr_3471	0.67	-2.2
4,141,775	-		Psyr_3471	0.67	+0.6
4,141,775	-		Psyr_3471	0.67	+3.1
4,141,775	-		Psyr_3471	0.67	-3.0
4,141,775	-		Psyr_3471	0.67	+0.5
4,141,775	-		Psyr_3471	0.67	+0.7
4,141,775	-		Psyr_3471	0.67	+0.4
4,141,775	-		Psyr_3471	0.67	+0.2
4,141,775	-		Psyr_3471	0.67	+1.0
4,141,775	-		Psyr_3471	0.67	-0.5
4,141,775	-		Psyr_3471	0.67	-2.4
4,142,159	+		Psyr_3471	0.86	-0.8
4,142,185	+		Psyr_3471	0.87	-0.9
4,142,239	+		Psyr_3471	0.90	+1.7
4,142,239	+		Psyr_3471	0.90	-0.1
4,142,240	-		Psyr_3471	0.90	+2.0
4,142,240	-		Psyr_3471	0.90	+3.3
4,142,240	-		Psyr_3471	0.90	+1.3
4,142,248	+				-0.1
4,142,248	+				+1.6
4,142,248	+				+1.6
4,142,248	+				+0.3
4,142,248	+				+2.2
4,142,248	+				-0.6
4,142,248	+				-3.9
4,142,248	+				+1.0
4,142,249	-				+1.1
4,142,249	-				+0.3
4,142,249	-				-0.5
4,142,259	+				-2.9
4,142,259	+				-0.2
4,142,260	-				-0.7
4,142,260	-				+3.3
4,142,290	+				-0.1
4,142,353	+				+1.1
4,142,462	+				+0.5
4,142,463	-				-0.5
4,142,464	+				+1.1
4,142,465	-				-0.1
4,142,465	-				+2.8
4,142,465	-				-1.0
4,142,495	+				-2.0
4,142,495	+				-0.7
4,142,546	+				+2.5
4,142,547	-				+0.3
4,142,588	-		Psyr_3472	0.10	+0.1
4,142,630	+		Psyr_3472	0.14	-0.9
4,142,631	-		Psyr_3472	0.14	-0.5
4,142,681	+		Psyr_3472	0.18	+2.4
4,142,681	+		Psyr_3472	0.18	-0.4
4,142,681	+		Psyr_3472	0.18	+0.6
4,142,681	+		Psyr_3472	0.18	+0.5
4,142,682	-		Psyr_3472	0.18	+0.8
4,142,682	-		Psyr_3472	0.18	+0.1
4,142,682	-		Psyr_3472	0.18	+1.5
4,142,690	+		Psyr_3472	0.18	+0.7
4,142,803	-		Psyr_3472	0.27	+0.8
4,143,008	+		Psyr_3472	0.44	+1.9
4,143,064	-		Psyr_3472	0.48	+0.7