Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3252

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,894,876	-		Psyr_3251	0.21	+2.0
3,894,876	-		Psyr_3251	0.21	+0.9
3,894,996	+		Psyr_3251	0.34	+0.5
3,894,996	+		Psyr_3251	0.34	-2.1
3,894,996	+		Psyr_3251	0.34	-1.1
3,894,996	+		Psyr_3251	0.34	-3.0
3,894,996	+		Psyr_3251	0.34	-1.3
3,894,996	+		Psyr_3251	0.34	-1.8
3,894,997	-		Psyr_3251	0.34	-1.3
3,894,997	-		Psyr_3251	0.34	-2.5
3,894,997	-		Psyr_3251	0.34	-1.7
3,894,997	-		Psyr_3251	0.34	+1.8
3,894,997	-		Psyr_3251	0.34	+1.7
3,895,200	+		Psyr_3251	0.56	-2.6
3,895,201	-		Psyr_3251	0.56	+1.1
3,895,420	-		Psyr_3251	0.79	+0.5
3,895,679	+				+1.1
3,895,680	-				+0.8
3,895,682	+				-2.2
3,895,682	+				-1.6
3,895,683	-				-0.1
3,895,683	-				+0.5
3,895,692	+				-0.8
3,895,693	-				-0.3
3,895,753	+				-0.1
3,895,772	+				-3.0
3,895,800	-				+0.6
3,895,800	-				-0.2
3,895,807	+				+0.3
3,895,807	+				-3.4
3,895,808	-				+1.0
3,895,808	-				-0.6
3,895,819	-				-0.4
3,895,819	-				+1.0
3,895,819	-				+0.4
3,895,985	+				-2.2
3,895,985	+				-0.9
3,895,985	+				+0.7
3,895,986	-				-2.2
3,895,986	-				-0.1
3,895,986	-				-1.9
3,896,099	+				-1.0
3,896,102	+		Psyr_3252	0.10	+0.9
3,896,102	+		Psyr_3252	0.10	-0.8
3,896,102	+		Psyr_3252	0.10	-0.8
3,896,102	+		Psyr_3252	0.10	+1.2
3,896,102	+		Psyr_3252	0.10	+0.7
3,896,102	+		Psyr_3252	0.10	-2.6
3,896,102	+		Psyr_3252	0.10	+0.6
3,896,102	+		Psyr_3252	0.10	+0.6
3,896,102	+		Psyr_3252	0.10	-2.7
3,896,102	+		Psyr_3252	0.10	-0.9
3,896,102	+		Psyr_3252	0.10	+1.3
3,896,102	+		Psyr_3252	0.10	-1.6
3,896,102	+		Psyr_3252	0.10	-3.0
3,896,102	+		Psyr_3252	0.10	-1.9
3,896,102	+		Psyr_3252	0.10	-1.6
3,896,102	+		Psyr_3252	0.10	+1.0
3,896,102	+		Psyr_3252	0.10	+0.4
3,896,103	-		Psyr_3252	0.10	+0.5
3,896,103	-		Psyr_3252	0.10	-1.4
3,896,103	-				+1.1
3,896,103	-		Psyr_3252	0.10	-0.2
3,896,103	-		Psyr_3252	0.10	-0.3
3,896,103	-		Psyr_3252	0.10	-1.2
3,896,103	-		Psyr_3252	0.10	-0.8
3,896,103	-		Psyr_3252	0.10	+0.1
3,896,103	-		Psyr_3252	0.10	-0.3
3,896,103	-		Psyr_3252	0.10	+4.9
3,896,103	-		Psyr_3252	0.10	+1.8
3,896,103	-		Psyr_3252	0.10	-2.1
3,896,103	-		Psyr_3252	0.10	+1.3
3,896,103	-		Psyr_3252	0.10	-1.5
3,896,103	-		Psyr_3252	0.10	-1.0
3,896,103	-		Psyr_3252	0.10	-0.9
3,896,288	+		Psyr_3252	0.16	-1.4
3,896,288	+		Psyr_3252	0.16	-0.1
3,896,288	+		Psyr_3252	0.16	-3.2
3,896,289	-		Psyr_3252	0.16	-0.9
3,896,289	-		Psyr_3252	0.16	+0.5
3,896,289	-		Psyr_3252	0.16	-2.5
3,896,289	-		Psyr_3252	0.16	-1.5
3,896,289	-		Psyr_3252	0.16	-1.1
3,896,369	+		Psyr_3252	0.19	-0.9
3,896,370	-		Psyr_3252	0.19	-1.5
3,896,535	-		Psyr_3252	0.25	-1.0
3,896,791	+		Psyr_3252	0.34	+0.4
3,896,892	+		Psyr_3252	0.37	+3.1
3,896,892	+		Psyr_3252	0.37	+0.9
3,896,906	+		Psyr_3252	0.38	-0.3
3,897,080	+		Psyr_3252	0.44	+1.4
3,897,287	+		Psyr_3252	0.51	+1.5
3,897,287	+		Psyr_3252	0.51	-0.2
3,897,365	+		Psyr_3252	0.53	-0.6
3,897,575	+		Psyr_3252	0.61	-2.5
3,897,576	-		Psyr_3252	0.61	-0.0
3,897,667	-		Psyr_3252	0.64	-3.1
3,897,685	+		Psyr_3252	0.64	-0.6
3,897,686	-		Psyr_3252	0.64	-1.5
3,897,686	-		Psyr_3252	0.64	+0.6
3,897,689	+		Psyr_3252	0.64	-1.4
3,897,689	+		Psyr_3252	0.64	+1.8
3,897,690	-		Psyr_3252	0.64	+0.4
3,897,690	-		Psyr_3252	0.64	-1.4
3,897,690	-		Psyr_3252	0.64	-1.3
3,898,001	+		Psyr_3252	0.75	-1.2
3,898,001	+		Psyr_3252	0.75	+0.0
3,898,002	-		Psyr_3252	0.75	-0.6
3,898,079	-		Psyr_3252	0.78	-1.2
3,898,316	+		Psyr_3252	0.86	-1.9
3,898,316	+		Psyr_3252	0.86	-0.8
3,898,316	+		Psyr_3252	0.86	-0.8
3,898,317	-		Psyr_3252	0.86	+1.9
3,898,317	-		Psyr_3252	0.86	+4.7
3,898,397	+		Psyr_3252	0.89	+1.7
3,898,397	+		Psyr_3252	0.89	-0.6
3,898,397	+		Psyr_3252	0.89	-1.5
3,898,397	+		Psyr_3252	0.89	+2.0
3,898,397	+		Psyr_3252	0.89	+0.4
3,898,397	+		Psyr_3252	0.89	-0.2
3,898,397	+		Psyr_3252	0.89	-2.1
3,898,397	+		Psyr_3252	0.89	+1.3
3,898,397	+		Psyr_3252	0.89	-0.9
3,898,397	+		Psyr_3252	0.89	-1.7
3,898,397	+		Psyr_3252	0.89	-1.0
3,898,398	-		Psyr_3252	0.89	+0.4
3,898,398	-		Psyr_3252	0.89	+0.7
3,898,398	-		Psyr_3252	0.89	+0.5
3,898,398	-		Psyr_3252	0.89	-0.4
3,898,398	-		Psyr_3252	0.89	+0.9
3,898,398	-		Psyr_3252	0.89	+1.2
3,898,398	-		Psyr_3252	0.89	-0.8
3,898,398	-		Psyr_3252	0.89	-0.3
3,898,398	-		Psyr_3252	0.89	+1.9
3,898,398	-		Psyr_3252	0.89	-2.5
3,898,450	-				+0.6
3,898,473	+				-2.1
3,898,607	+				-1.6
3,898,608	-				+1.0
3,898,797	+		Psyr_3253	0.21	+1.4
3,898,797	+		Psyr_3253	0.21	-2.4
3,898,797	+		Psyr_3253	0.21	+0.3
3,898,798	-		Psyr_3253	0.21	+0.4
3,898,927	+		Psyr_3253	0.58	-0.7
3,898,927	+		Psyr_3253	0.58	-1.9
3,898,927	+		Psyr_3253	0.58	-0.9
3,898,928	-		Psyr_3253	0.59	-0.7
3,898,928	-		Psyr_3253	0.59	-1.7
3,898,928	-		Psyr_3253	0.59	+0.1
3,899,045	+				+0.3
3,899,045	+				+0.8
3,899,045	+				+0.6
3,899,045	+				+2.1
3,899,045	+				-1.1
3,899,046	-				-2.1
3,899,046	-				-0.5
3,899,046	-				-2.7
3,899,046	-				-0.8
3,899,265	+		Psyr_3254	0.12	-2.5
3,899,266	-		Psyr_3254	0.12	-0.5
3,899,266	-		Psyr_3254	0.12	+0.7
3,899,445	+		Psyr_3254	0.22	+0.8
3,899,497	+		Psyr_3254	0.26	-0.6
3,899,498	-		Psyr_3254	0.26	+0.2
3,899,498	-		Psyr_3254	0.26	-1.9
3,899,568	+		Psyr_3254	0.30	-0.2
3,899,568	+		Psyr_3254	0.30	-2.1
3,899,568	+		Psyr_3254	0.30	+0.5
3,899,568	+		Psyr_3254	0.30	+1.0
3,899,568	+		Psyr_3254	0.30	+0.2
3,899,569	-		Psyr_3254	0.30	+0.1