Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2924

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,512,017	-		Psyr_2923	0.11	-1.0
3,512,239	+				+1.0
3,512,239	+		Psyr_2923	0.35	+1.0
3,512,239	+		Psyr_2923	0.35	-1.8
3,512,239	+		Psyr_2923	0.35	-1.3
3,512,240	-		Psyr_2923	0.35	+0.4
3,512,240	-		Psyr_2923	0.35	-1.5
3,512,240	-		Psyr_2923	0.35	-1.1
3,512,240	-		Psyr_2923	0.35	+0.5
3,512,240	-		Psyr_2923	0.35	+1.4
3,512,240	-		Psyr_2923	0.35	-0.0
3,512,305	+		Psyr_2923	0.42	+0.7
3,512,305	+		Psyr_2923	0.42	+0.9
3,512,305	+		Psyr_2923	0.42	-0.8
3,512,305	+		Psyr_2923	0.42	+0.1
3,512,305	+		Psyr_2923	0.42	-0.6
3,512,305	+		Psyr_2923	0.42	-3.2
3,512,305	+		Psyr_2923	0.42	+0.6
3,512,306	-		Psyr_2923	0.42	-0.6
3,512,306	-		Psyr_2923	0.42	-1.0
3,512,306	-		Psyr_2923	0.42	+1.0
3,512,306	-		Psyr_2923	0.42	-0.4
3,512,309	+		Psyr_2923	0.43	-1.3
3,512,309	+		Psyr_2923	0.43	+2.4
3,512,309	+		Psyr_2923	0.43	-0.4
3,512,309	+		Psyr_2923	0.43	-2.0
3,512,309	+		Psyr_2923	0.43	+0.9
3,512,309	+		Psyr_2923	0.43	+3.2
3,512,310	-		Psyr_2923	0.43	+0.7
3,512,310	-		Psyr_2923	0.43	-0.0
3,512,310	-		Psyr_2923	0.43	-2.7
3,512,310	-		Psyr_2923	0.43	-1.6
3,512,349	+		Psyr_2923	0.47	-2.0
3,512,399	+		Psyr_2923	0.52	+1.3
3,512,431	+		Psyr_2923	0.56	+3.1
3,512,432	-		Psyr_2923	0.56	-1.6
3,512,453	+		Psyr_2923	0.58	-1.3
3,512,471	+		Psyr_2923	0.60	-0.6
3,512,472	-		Psyr_2923	0.60	-1.2
3,512,472	-		Psyr_2923	0.60	-3.3
3,512,472	-		Psyr_2923	0.60	+1.6
3,512,573	+		Psyr_2923	0.71	+1.4
3,512,573	+		Psyr_2923	0.71	+2.8
3,512,574	-		Psyr_2923	0.71	-1.3
3,512,633	+		Psyr_2923	0.77	+0.2
3,512,813	+				-0.8
3,512,813	+				-0.0
3,512,813	+				-1.4
3,512,813	+				-1.9
3,512,813	+				+1.4
3,512,814	-				+0.5
3,512,814	-				+0.2
3,512,814	-				-2.8
3,512,840	-				-1.0
3,512,860	-				+1.0
3,512,876	-				+2.4
3,512,876	-				-2.3
3,512,937	+				-0.6
3,513,044	+				-1.0
3,513,045	-				+0.7
3,513,098	+		Psyr_2924	0.11	+0.2
3,513,098	+		Psyr_2924	0.11	+2.3
3,513,099	-		Psyr_2924	0.11	+0.1
3,513,099	-		Psyr_2924	0.11	+0.3
3,513,249	-		Psyr_2924	0.23	+1.7
3,513,249	-		Psyr_2924	0.23	-0.2
3,513,297	+		Psyr_2924	0.27	+0.7
3,513,297	+		Psyr_2924	0.27	-3.4
3,513,298	-		Psyr_2924	0.27	-2.0
3,513,298	-		Psyr_2924	0.27	+2.1
3,513,380	+		Psyr_2924	0.33	+1.2
3,513,380	+		Psyr_2924	0.33	-2.3
3,513,381	-		Psyr_2924	0.33	-0.8
3,513,381	-		Psyr_2924	0.33	+0.6
3,513,381	-		Psyr_2924	0.33	-1.0
3,513,392	-		Psyr_2924	0.34	+0.4
3,513,392	-		Psyr_2924	0.34	+0.7
3,513,423	+		Psyr_2924	0.36	-1.6
3,513,424	-		Psyr_2924	0.36	+0.4
3,513,424	-		Psyr_2924	0.36	-0.0
3,513,447	+		Psyr_2924	0.38	-2.9
3,513,448	-		Psyr_2924	0.38	+1.2
3,513,448	-		Psyr_2924	0.38	+0.8
3,513,486	-		Psyr_2924	0.41	-1.8
3,513,487	+		Psyr_2924	0.41	-0.8
3,513,487	+		Psyr_2924	0.41	+1.4
3,513,487	+		Psyr_2924	0.41	-1.6
3,513,487	+		Psyr_2924	0.41	+1.3
3,513,487	+		Psyr_2924	0.41	+0.2
3,513,487	+		Psyr_2924	0.41	-1.3
3,513,488	-		Psyr_2924	0.41	-3.0
3,513,488	-		Psyr_2924	0.41	+1.2
3,513,488	-				+0.4
3,513,488	-		Psyr_2924	0.41	+2.3
3,513,488	-		Psyr_2924	0.41	+1.8
3,513,488	-		Psyr_2924	0.41	+1.5
3,513,488	-		Psyr_2924	0.41	+0.2
3,513,492	-		Psyr_2924	0.42	-0.0
3,513,492	-		Psyr_2924	0.42	+0.5
3,513,492	-		Psyr_2924	0.42	-3.0
3,513,492	-		Psyr_2924	0.42	-0.5
3,513,551	+		Psyr_2924	0.46	-0.2
3,513,551	+		Psyr_2924	0.46	+0.6
3,513,551	+		Psyr_2924	0.46	+0.7
3,513,552	-		Psyr_2924	0.46	+2.7
3,513,552	-		Psyr_2924	0.46	-2.3
3,513,552	-		Psyr_2924	0.46	-0.3
3,513,552	-		Psyr_2924	0.46	+0.9
3,513,555	+		Psyr_2924	0.47	+1.7
3,513,556	-		Psyr_2924	0.47	+0.7
3,513,556	-		Psyr_2924	0.47	-0.6
3,513,556	-		Psyr_2924	0.47	+2.4
3,513,556	-		Psyr_2924	0.47	-2.3
3,513,603	+		Psyr_2924	0.50	-1.5
3,513,603	+		Psyr_2924	0.50	+0.5
3,513,603	+		Psyr_2924	0.50	+1.2
3,513,682	+		Psyr_2924	0.56	-0.2
3,513,806	+		Psyr_2924	0.66	+1.9
3,513,807	-		Psyr_2924	0.66	-2.8
3,513,807	-		Psyr_2924	0.66	-1.8
3,513,807	-		Psyr_2924	0.66	+0.4
3,513,807	-		Psyr_2924	0.66	-1.0
3,513,918	+		Psyr_2924	0.75	+2.5
3,513,919	-		Psyr_2924	0.75	+0.6
3,514,021	-		Psyr_2924	0.83	-0.6
3,514,038	+		Psyr_2924	0.84	+0.7
3,514,039	-		Psyr_2924	0.84	+0.8
3,514,039	-		Psyr_2924	0.84	+1.3
3,514,039	-		Psyr_2924	0.84	+0.1
3,514,039	-		Psyr_2924	0.84	+0.4
3,514,039	-		Psyr_2924	0.84	+1.6
3,514,096	-		Psyr_2924	0.88	-0.4
3,514,221	+				-1.0
3,514,232	-				+0.2
3,514,291	+		Psyr_2925	0.15	-0.0
3,514,472	+		Psyr_2925	0.68	+2.0
3,514,473	-		Psyr_2925	0.68	-2.1
3,514,473	-		Psyr_2925	0.68	-0.2
3,514,473	-		Psyr_2925	0.68	-2.3
3,514,473	-		Psyr_2925	0.68	-1.0
3,514,556	+				-2.6
3,514,556	+				-1.6
3,514,557	-				+2.0
3,514,557	-				-0.3
3,514,564	-				+3.5
3,514,564	-				+1.5
3,514,640	+				-0.3
3,514,964	+		Psyr_2926	0.25	-1.5
3,514,964	+		Psyr_2926	0.25	-1.1
3,514,964	+		Psyr_2926	0.25	+1.7
3,514,964	+		Psyr_2926	0.25	-0.5
3,514,964	+		Psyr_2926	0.25	-0.8
3,514,964	+		Psyr_2926	0.25	+1.0
3,514,965	-		Psyr_2926	0.25	+2.8
3,515,171	+		Psyr_2926	0.42	+1.3
3,515,171	+		Psyr_2926	0.42	-1.2
3,515,171	+		Psyr_2926	0.42	-0.5
3,515,171	+		Psyr_2926	0.42	+0.4
3,515,172	-		Psyr_2926	0.42	-0.8
3,515,172	-		Psyr_2926	0.42	+1.0
3,515,177	+		Psyr_2926	0.43	-1.0
3,515,177	+		Psyr_2926	0.43	+1.6
3,515,177	+		Psyr_2926	0.43	+1.3
3,515,177	+		Psyr_2926	0.43	-0.7
3,515,188	-		Psyr_2926	0.44	-0.9