Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0931

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,062,811	-		Psyr_0930	0.67	-1.0
1,062,824	+		Psyr_0930	0.67	-0.5
1,062,824	+		Psyr_0930	0.67	-1.0
1,062,824	+		Psyr_0930	0.67	-0.8
1,062,824	+		Psyr_0930	0.67	-0.8
1,062,824	+		Psyr_0930	0.67	+1.6
1,062,824	+		Psyr_0930	0.67	+1.8
1,062,824	+		Psyr_0930	0.67	+1.5
1,062,824	+		Psyr_0930	0.67	-1.0
1,062,825	-		Psyr_0930	0.67	+1.2
1,062,825	-		Psyr_0930	0.67	+4.5
1,062,825	-		Psyr_0930	0.67	+1.0
1,062,825	-		Psyr_0930	0.67	+1.7
1,062,825	-		Psyr_0930	0.67	+0.9
1,062,825	-		Psyr_0930	0.67	+0.6
1,062,825	-		Psyr_0930	0.67	+2.2
1,062,825	-		Psyr_0930	0.67	+0.3
1,062,938	+		Psyr_0930	0.72	-4.1
1,062,938	+		Psyr_0930	0.72	-1.3
1,062,938	+		Psyr_0930	0.72	-1.8
1,062,938	+		Psyr_0930	0.72	-0.8
1,062,938	+		Psyr_0930	0.72	+3.5
1,062,938	+		Psyr_0930	0.72	+1.3
1,062,938	+		Psyr_0930	0.72	-1.3
1,062,938	+		Psyr_0930	0.72	-1.5
1,062,938	+		Psyr_0930	0.72	+1.5
1,062,938	+		Psyr_0930	0.72	+1.8
1,062,938	+		Psyr_0930	0.72	-2.6
1,062,939	-		Psyr_0930	0.72	+0.7
1,062,939	-		Psyr_0930	0.72	+4.4
1,062,939	-		Psyr_0930	0.72	+2.2
1,062,939	-		Psyr_0930	0.72	-2.4
1,062,939	-		Psyr_0930	0.72	+2.5
1,062,939	-		Psyr_0930	0.72	+2.0
1,062,939	-		Psyr_0930	0.72	-3.0
1,062,939	-		Psyr_0930	0.72	-0.1
1,062,939	-		Psyr_0930	0.72	+0.1
1,062,939	-		Psyr_0930	0.72	+0.9
1,062,939	-		Psyr_0930	0.72	-1.3
1,062,939	-		Psyr_0930	0.72	+1.5
1,062,939	-		Psyr_0930	0.72	+2.7
1,062,939	-		Psyr_0930	0.72	-0.8
1,062,939	-		Psyr_0930	0.72	+0.0
1,062,939	-		Psyr_0930	0.72	+0.6
1,062,939	-		Psyr_0930	0.72	-3.3
1,062,939	-		Psyr_0930	0.72	+0.7
1,062,939	-		Psyr_0930	0.72	-1.6
1,062,939	-		Psyr_0930	0.72	-0.3
1,062,939	-		Psyr_0930	0.72	-0.2
1,062,939	-		Psyr_0930	0.72	-3.2
1,062,939	-		Psyr_0930	0.72	+1.1
1,062,939	-		Psyr_0930	0.72	+1.8
1,063,223	-		Psyr_0930	0.83	+0.7
1,063,339	+		Psyr_0930	0.88	-0.6
1,063,340	-		Psyr_0930	0.88	-2.0
1,063,340	-		Psyr_0930	0.88	-0.5
1,063,347	+		Psyr_0930	0.88	-1.0
1,063,347	+		Psyr_0930	0.88	-1.0
1,063,347	+		Psyr_0930	0.88	-0.9
1,063,347	+		Psyr_0930	0.88	+0.8
1,063,348	-		Psyr_0930	0.88	-2.2
1,063,449	+				+2.0
1,063,449	+				-0.1
1,063,450	-				+1.2
1,063,453	+				-2.1
1,063,453	+				+0.8
1,063,454	-				+0.5
1,063,454	-				-0.4
1,063,454	-				+0.8
1,063,597	+				-0.9
1,063,597	+				-1.8
1,063,639	+				-0.1
1,063,639	+				+1.0
1,063,639	+				-0.2
1,063,639	+				+0.5
1,063,639	+				-1.5
1,063,639	+				+1.8
1,063,639	+				-1.3
1,063,639	+				-0.1
1,063,639	+				+0.3
1,063,640	-				+1.4
1,063,640	-				+1.5
1,063,640	-				-0.7
1,063,640	-				+0.1
1,063,640	-				+2.2
1,063,640	-				+0.4
1,063,640	-				+1.7
1,063,640	-				-1.3
1,063,640	-				-0.8
1,063,702	-				-1.7
1,063,726	+				-2.1
1,063,727	-				+2.1
1,063,727	-				-0.4
1,063,734	-				-2.4
1,063,734	-				-2.7
1,063,747	+				+1.3
1,063,748	-				+1.6
1,063,751	+				-1.8
1,063,751	+				-0.1
1,063,751	+				-1.9
1,063,751	+				-2.3
1,063,752	-				-0.5
1,063,752	-				-3.4
1,063,752	-				+0.8
1,063,752	-				-0.8
1,063,785	+				+1.3
1,063,785	+				+0.6
1,063,785	+				+1.0
1,063,786	-				-0.5
1,063,786	-				+0.0
1,063,810	+				-0.7
1,063,810	+				-0.4
1,063,810	+				-0.9
1,063,810	+				-0.5
1,063,811	-				+1.3
1,063,811	-				-0.6
1,063,811	-				-1.2
1,063,811	-				-0.1
1,063,811	-				+0.7
1,063,935	+		Psyr_0931	0.13	+0.5
1,063,981	+		Psyr_0931	0.16	-1.6
1,063,981	+		Psyr_0931	0.16	+0.7
1,063,982	-		Psyr_0931	0.16	+0.7
1,063,982	-		Psyr_0931	0.16	+2.6
1,063,982	-		Psyr_0931	0.16	-1.4
1,063,982	-		Psyr_0931	0.16	+1.7
1,064,026	-		Psyr_0931	0.19	-1.3
1,064,069	+		Psyr_0931	0.22	+1.7
1,064,069	+		Psyr_0931	0.22	+0.2
1,064,069	+		Psyr_0931	0.22	-1.3
1,064,070	-		Psyr_0931	0.22	-2.1
1,064,070	-		Psyr_0931	0.22	-1.3
1,064,167	-		Psyr_0931	0.29	+1.1
1,064,171	-		Psyr_0931	0.29	+1.7
1,064,171	-		Psyr_0931	0.29	+1.4
1,064,231	+		Psyr_0931	0.33	-3.7
1,064,231	+		Psyr_0931	0.33	-0.5
1,064,231	+		Psyr_0931	0.33	-1.1
1,064,231	+		Psyr_0931	0.33	-1.3
1,064,231	+		Psyr_0931	0.33	+0.4
1,064,231	+		Psyr_0931	0.33	+0.4
1,064,232	-		Psyr_0931	0.33	+1.0
1,064,232	-		Psyr_0931	0.33	+1.6
1,064,232	-		Psyr_0931	0.33	+0.8
1,064,238	+		Psyr_0931	0.34	+1.7
1,064,239	-		Psyr_0931	0.34	+2.0
1,064,245	-		Psyr_0931	0.34	+1.0
1,064,262	+		Psyr_0931	0.35	-3.3
1,064,263	-		Psyr_0931	0.35	+1.7
1,064,292	+		Psyr_0931	0.37	-2.8
1,064,292	+		Psyr_0931	0.37	+0.1
1,064,292	+		Psyr_0931	0.37	-0.7
1,064,293	-		Psyr_0931	0.37	-1.6
1,064,293	-		Psyr_0931	0.37	-1.3
1,064,293	-				+0.5
1,064,293	-		Psyr_0931	0.37	-0.1
1,064,293	-		Psyr_0931	0.37	+0.2
1,064,403	+		Psyr_0931	0.45	+0.3
1,064,404	-		Psyr_0931	0.45	-2.5
1,064,413	-		Psyr_0931	0.46	-1.3
1,064,451	+		Psyr_0931	0.48	+0.4
1,064,451	+		Psyr_0931	0.48	+1.3
1,064,452	-		Psyr_0931	0.48	+0.5
1,064,452	-		Psyr_0931	0.48	+0.2
1,064,452	-		Psyr_0931	0.48	-1.1
1,064,452	-		Psyr_0931	0.48	+0.9
1,064,454	+		Psyr_0931	0.48	-2.0
1,064,454	+		Psyr_0931	0.48	-1.2
1,064,454	+		Psyr_0931	0.48	+1.2
1,064,454	+		Psyr_0931	0.48	-1.5
1,064,454	+		Psyr_0931	0.48	-2.9
1,064,454	+		Psyr_0931	0.48	+1.7
1,064,454	+		Psyr_0931	0.48	-0.5
1,064,455	-		Psyr_0931	0.48	+0.4
1,064,455	-		Psyr_0931	0.48	-0.2
1,064,455	-		Psyr_0931	0.48	-1.5
1,064,455	-		Psyr_0931	0.48	-1.8
1,064,455	-		Psyr_0931	0.48	-1.9
1,064,455	-		Psyr_0931	0.48	-1.7
1,064,549	+		Psyr_0931	0.55	+0.5
1,064,549	+		Psyr_0931	0.55	+1.0
1,064,549	+		Psyr_0931	0.55	+1.0
1,064,549	+		Psyr_0931	0.55	+1.5
1,064,549	+		Psyr_0931	0.55	+1.4
1,064,549	+		Psyr_0931	0.55	+0.3
1,064,549	+		Psyr_0931	0.55	-0.1
1,064,549	+		Psyr_0931	0.55	+1.3
1,064,550	-		Psyr_0931	0.55	+0.3
1,064,550	-		Psyr_0931	0.55	+1.8
1,064,550	-		Psyr_0931	0.55	-0.1
1,064,550	-		Psyr_0931	0.55	-2.3
1,064,550	-		Psyr_0931	0.55	+2.1
1,064,550	-		Psyr_0931	0.55	+2.3
1,064,553	+		Psyr_0931	0.55	+1.9
1,064,553	+		Psyr_0931	0.55	+0.5
1,064,553	+		Psyr_0931	0.55	-2.9
1,064,554	-		Psyr_0931	0.55	+1.3
1,064,554	-		Psyr_0931	0.55	+1.3
1,064,575	+		Psyr_0931	0.57	+0.9
1,064,575	+		Psyr_0931	0.57	-2.0
1,064,575	+		Psyr_0931	0.57	+0.5
1,064,575	+		Psyr_0931	0.57	-1.3
1,064,576	-		Psyr_0931	0.57	-0.8
1,064,576	-		Psyr_0931	0.57	-2.0
1,064,576	-		Psyr_0931	0.57	+1.2
1,064,576	-		Psyr_0931	0.57	-2.5
1,065,058	+		Psyr_0931	0.90	+0.6
1,065,058	+		Psyr_0931	0.90	+1.6
1,065,058	+		Psyr_0931	0.90	-2.4
1,065,058	+		Psyr_0931	0.90	-0.0
1,065,059	-				+0.3
1,065,059	-				-1.2
1,065,059	-				+1.0
1,065,059	-				-1.5
1,065,059	-				-0.6
1,065,059	-				-1.8
1,065,059	-				-2.8
1,065,059	-				+1.4
1,065,059	-				-0.8
1,065,059	-				+0.7
1,065,059	-				-1.2
1,065,072	+				+0.5
1,065,197	+				-1.1
1,065,197	+				+0.6
1,065,197	+				+1.6
1,065,197	+				+0.3
1,065,198	-				-0.5
1,065,198	-				-0.5
1,065,198	-				-2.5
1,065,198	-				-1.7
1,065,198	-				+0.1
1,065,198	-				+0.8
1,065,198	-				+0.8
1,065,218	+				-0.1
1,065,218	+				-2.7
1,065,218	+				-0.5
1,065,284	+				+1.7
1,065,284	+				+0.2
1,065,284	+				+2.5
1,065,284	+				-1.6
1,065,284	+				-0.3
1,065,284	+				-3.8
1,065,284	+				-0.6
1,065,284	+				-1.2
1,065,284	+				+0.0
1,065,284	+				+0.7
1,065,284	+				-2.7
1,065,284	+				-1.0
1,065,284	+				-2.4
1,065,285	-				+0.9
1,065,285	-				+1.0
1,065,285	-				-0.2
1,065,285	-				+0.5
1,065,285	-				-0.1
1,065,285	-				+1.0
1,065,285	-				+0.8
1,065,285	-				+1.5
1,065,286	+				+0.8
1,065,286	+				-1.4
1,065,286	+				+0.9
1,065,287	-				-2.0
1,065,330	+		Psyr_0932	0.12	-3.6
1,065,364	+		Psyr_0932	0.16	-0.7
1,065,365	-		Psyr_0932	0.16	-0.1
1,065,365	-		Psyr_0932	0.16	+0.8
1,065,365	-		Psyr_0932	0.16	+0.8
1,065,527	+		Psyr_0932	0.35	-0.3
1,065,527	+		Psyr_0932	0.35	+0.5
1,065,563	-		Psyr_0932	0.39	-0.8
1,065,563	-		Psyr_0932	0.39	+2.5
1,065,601	-		Psyr_0932	0.43	+1.4
1,065,601	-		Psyr_0932	0.43	-0.7
1,065,657	-		Psyr_0932	0.49	+0.3
1,065,706	-		Psyr_0932	0.55	-1.3
1,065,816	-		Psyr_0932	0.67	+0.2
1,065,839	+		Psyr_0932	0.70	+0.0
1,065,839	+		Psyr_0932	0.70	-0.1
1,065,839	+		Psyr_0932	0.70	-0.5
1,065,839	+		Psyr_0932	0.70	-0.8
1,065,839	+		Psyr_0932	0.70	-0.4
1,065,839	+		Psyr_0932	0.70	+3.1
1,065,839	+		Psyr_0932	0.70	-0.9
1,065,839	+		Psyr_0932	0.70	+0.6
1,065,839	+		Psyr_0932	0.70	-1.3
1,065,839	+		Psyr_0932	0.70	+0.9
1,065,839	+		Psyr_0932	0.70	-0.9
1,065,839	+		Psyr_0932	0.70	+0.4
1,065,840	-		Psyr_0932	0.70	-1.2
1,065,840	-		Psyr_0932	0.70	+3.1
1,065,840	-		Psyr_0932	0.70	-0.3
1,065,840	-		Psyr_0932	0.70	+2.8
1,065,840	-		Psyr_0932	0.70	-0.3
1,065,840	-		Psyr_0932	0.70	+1.5
1,065,840	-		Psyr_0932	0.70	-1.7
1,065,840	-		Psyr_0932	0.70	+0.9
1,065,840	-		Psyr_0932	0.70	-2.1
1,065,840	-		Psyr_0932	0.70	+0.5
1,065,844	+		Psyr_0932	0.71	-0.2
1,065,844	+		Psyr_0932	0.71	-2.1
1,065,844	+		Psyr_0932	0.71	-2.1
1,065,844	+		Psyr_0932	0.71	+0.0
1,065,845	-		Psyr_0932	0.71	+0.6
1,065,962	+		Psyr_0932	0.84	-0.3
1,065,962	+		Psyr_0932	0.84	-0.1
1,065,963	-		Psyr_0932	0.84	+0.2
1,066,025	-				+0.6
1,066,032	+				+1.1
1,066,032	+				-1.8
1,066,032	+				-2.2
1,066,032	+				-0.6
1,066,032	+				-1.1
1,066,032	+				-2.2
1,066,032	+				+0.4
1,066,033	-				+0.3
1,066,033	-				-0.6
1,066,033	-				-0.1
1,066,033	-				-0.3
1,066,033	-				+0.7
1,066,033	-				-0.8
1,066,036	+				-1.4
1,066,036	+				-0.1
1,066,036	+				-3.6
1,066,036	+				+1.1
1,066,036	+				+0.6
1,066,036	+				+0.1
1,066,036	+				-0.9
1,066,036	+				+0.6
1,066,036	+				+1.2
1,066,036	+				-1.7
1,066,037	-				+0.9
1,066,037	-				+0.4
1,066,037	-				+0.8
1,066,037	-				-1.5
1,066,037	-				+0.5
1,066,077	+				+0.9
1,066,181	+				+1.6
1,066,182	-				-2.4
1,066,185	+				-3.0
1,066,185	+				+1.6
1,066,186	-				-0.5
1,066,186	-				-0.3
1,066,186	-				-0.7
1,066,186	-				+0.4
1,066,186	-				-4.0
1,066,186	-				+2.1
1,066,186	-				-0.4