Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0911

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,032,262	+				+2.5
1,032,262	+				-0.1
1,032,262	+				+1.6
1,032,262	+				+0.2
1,032,262	+				-0.0
1,032,262	+				+0.5
1,032,262	+				-0.5
1,032,263	-				+1.0
1,032,263	-				+0.0
1,032,263	-				-2.1
1,032,263	-				-0.1
1,032,266	+				-2.8
1,032,266	+				-0.2
1,032,266	+				-1.0
1,032,266	+				-0.0
1,032,266	+				+2.4
1,032,266	+				+1.0
1,032,266	+				+0.0
1,032,266	+				+1.5
1,032,266	+				-1.4
1,032,266	+				-1.0
1,032,266	+				-0.9
1,032,266	+				-0.3
1,032,267	-				-1.6
1,032,267	-				+1.0
1,032,267	-				+0.0
1,032,267	-				+0.3
1,032,267	-				+0.6
1,032,267	-				-0.0
1,032,267	-				+0.2
1,032,267	-				-1.9
1,032,267	-				-2.9
1,032,278	-				-1.6
1,032,283	+				+3.6
1,032,284	-				-0.5
1,032,284	-				+0.8
1,032,284	-				-1.3
1,032,322	+				-0.9
1,032,322	+				+0.9
1,032,323	-				-0.5
1,032,323	-				+1.1
1,032,323	-				+0.9
1,032,329	+				+1.5
1,032,329	+				+2.3
1,032,330	-				-2.2
1,032,330	-				-0.3
1,032,330	-				+0.1
1,032,330	-				-3.8
1,032,330	-				-0.6
1,032,330	-				-0.9
1,032,352	+				+0.2
1,032,352	+				+0.5
1,032,352	+				-1.9
1,032,352	+				-1.2
1,032,352	+				-1.9
1,032,352	+				+1.6
1,032,352	+				-1.9
1,032,353	-				-2.4
1,032,353	-				+0.7
1,032,357	+				-0.4
1,032,357	+				+0.8
1,032,357	+				+0.5
1,032,357	+				-0.7
1,032,357	+				-1.9
1,032,357	+				-0.0
1,032,358	-				-1.0
1,032,358	-				-0.3
1,032,358	-				-0.1
1,032,358	-				-2.5
1,032,358	-				-0.9
1,032,358	-				+0.5
1,032,358	-				+1.2
1,032,358	-				+0.4
1,032,419	+				+2.1
1,032,419	+				-0.1
1,032,419	+				-1.1
1,032,420	-				-0.3
1,032,420	-				+2.3
1,032,420	-				+0.2
1,032,429	-				+0.9
1,032,448	+				+0.6
1,032,448	+				-0.9
1,032,448	+				-0.9
1,032,449	-				-1.6
1,032,449	-				-0.5
1,032,531	-		Psyr_0910	0.15	+2.0
1,032,531	-		Psyr_0910	0.15	-3.3
1,032,626	+		Psyr_0910	0.28	-2.8
1,032,627	-		Psyr_0910	0.28	+2.5
1,032,653	+		Psyr_0910	0.32	+3.8
1,032,689	+		Psyr_0910	0.37	+1.5
1,032,689	+		Psyr_0910	0.37	+0.3
1,032,689	+		Psyr_0910	0.37	+2.2
1,032,689	+		Psyr_0910	0.37	+1.3
1,032,689	+		Psyr_0910	0.37	+0.5
1,032,689	+		Psyr_0910	0.37	+1.2
1,032,689	+		Psyr_0910	0.37	+0.6
1,032,689	+		Psyr_0910	0.37	+0.4
1,032,689	+		Psyr_0910	0.37	-2.8
1,032,689	+		Psyr_0910	0.37	+0.4
1,032,689	+		Psyr_0910	0.37	-1.0
1,032,689	+		Psyr_0910	0.37	-0.5
1,032,689	+		Psyr_0910	0.37	+2.3
1,032,689	+		Psyr_0910	0.37	-2.1
1,032,689	+		Psyr_0910	0.37	-0.5
1,032,690	-		Psyr_0910	0.37	+1.1
1,032,690	-		Psyr_0910	0.37	+0.8
1,032,690	-		Psyr_0910	0.37	+0.0
1,032,690	-		Psyr_0910	0.37	+0.5
1,032,690	-		Psyr_0910	0.37	+0.2
1,032,690	-		Psyr_0910	0.37	-0.3
1,032,690	-		Psyr_0910	0.37	+1.4
1,032,690	-		Psyr_0910	0.37	-1.3
1,032,690	-		Psyr_0910	0.37	-0.1
1,032,690	-		Psyr_0910	0.37	+3.2
1,032,690	-		Psyr_0910	0.37	-0.1
1,032,690	-		Psyr_0910	0.37	-0.7
1,032,691	+		Psyr_0910	0.37	-0.8
1,032,691	+		Psyr_0910	0.37	+0.1
1,032,691	+		Psyr_0910	0.37	+2.8
1,032,691	+		Psyr_0910	0.37	-0.0
1,032,691	+		Psyr_0910	0.37	+0.9
1,032,691	+		Psyr_0910	0.37	+0.9
1,032,691	+		Psyr_0910	0.37	-1.7
1,032,691	+		Psyr_0910	0.37	+0.1
1,032,691	+		Psyr_0910	0.37	-0.1
1,032,691	+		Psyr_0910	0.37	-2.1
1,032,691	+		Psyr_0910	0.37	-2.0
1,032,691	+		Psyr_0910	0.37	-0.3
1,032,691	+		Psyr_0910	0.37	+0.0
1,032,691	+		Psyr_0910	0.37	+0.3
1,032,691	+		Psyr_0910	0.37	-1.6
1,032,691	+		Psyr_0910	0.37	+0.2
1,032,691	+		Psyr_0910	0.37	-1.5
1,032,691	+		Psyr_0910	0.37	+0.9
1,032,691	+		Psyr_0910	0.37	+0.7
1,032,691	+		Psyr_0910	0.37	+0.2
1,032,691	+		Psyr_0910	0.37	+1.1
1,032,691	+		Psyr_0910	0.37	-1.7
1,032,691	+		Psyr_0910	0.37	+0.6
1,032,691	+		Psyr_0910	0.37	-1.7
1,032,691	+		Psyr_0910	0.37	+1.5
1,032,691	+		Psyr_0910	0.37	-0.5
1,032,692	-		Psyr_0910	0.37	-1.9
1,032,692	-		Psyr_0910	0.37	-1.5
1,032,692	-		Psyr_0910	0.37	-2.6
1,032,692	-		Psyr_0910	0.37	+1.6
1,032,692	-		Psyr_0910	0.37	+0.2
1,032,692	-		Psyr_0910	0.37	-2.1
1,032,692	-		Psyr_0910	0.37	+1.2
1,032,692	-		Psyr_0910	0.37	-1.3
1,032,692	-		Psyr_0910	0.37	+0.5
1,032,692	-		Psyr_0910	0.37	+0.1
1,032,692	-		Psyr_0910	0.37	-0.3
1,032,692	-		Psyr_0910	0.37	+3.0
1,032,692	-		Psyr_0910	0.37	+2.1
1,032,692	-		Psyr_0910	0.37	-2.0
1,032,692	-		Psyr_0910	0.37	-0.5
1,032,692	-		Psyr_0910	0.37	+3.1
1,032,692	-		Psyr_0910	0.37	+1.0
1,032,692	-		Psyr_0910	0.37	+1.7
1,032,692	-		Psyr_0910	0.37	-1.5
1,032,692	-		Psyr_0910	0.37	-0.5
1,032,692	-		Psyr_0910	0.37	-1.7
1,032,692	-		Psyr_0910	0.37	-2.5
1,032,692	-		Psyr_0910	0.37	+1.5
1,032,692	-		Psyr_0910	0.37	-0.5
1,032,692	-		Psyr_0910	0.37	-2.9
1,032,692	-		Psyr_0910	0.37	+0.3
1,032,700	-		Psyr_0910	0.38	+2.7
1,032,700	-		Psyr_0910	0.38	+0.5
1,032,740	+		Psyr_0910	0.44	-0.7
1,032,740	+		Psyr_0910	0.44	+2.7
1,032,740	+		Psyr_0910	0.44	+0.2
1,032,740	+		Psyr_0910	0.44	+0.4
1,032,740	+		Psyr_0910	0.44	+0.6
1,032,740	+		Psyr_0910	0.44	-1.3
1,032,740	+		Psyr_0910	0.44	-0.9
1,032,741	-		Psyr_0910	0.44	+0.7
1,032,741	-		Psyr_0910	0.44	+0.2
1,032,741	-		Psyr_0910	0.44	-1.1
1,032,741	-		Psyr_0910	0.44	+1.0
1,032,741	-		Psyr_0910	0.44	+2.0
1,032,741	-		Psyr_0910	0.44	-1.5
1,032,741	-		Psyr_0910	0.44	-0.9
1,032,743	+		Psyr_0910	0.44	-1.1
1,032,744	-		Psyr_0910	0.44	+0.1
1,032,744	-		Psyr_0910	0.44	-1.5
1,032,905	+		Psyr_0910	0.66	+1.5
1,032,906	-		Psyr_0910	0.66	-0.1
1,032,959	+		Psyr_0910	0.73	+0.6
1,032,959	+		Psyr_0910	0.73	+0.5
1,032,959	+		Psyr_0910	0.73	-0.7
1,032,960	-		Psyr_0910	0.74	-0.1
1,032,960	-		Psyr_0910	0.74	-2.5
1,032,960	-		Psyr_0910	0.74	-2.2
1,032,992	+		Psyr_0910	0.78	-3.7
1,032,992	+		Psyr_0910	0.78	-2.2
1,032,992	+		Psyr_0910	0.78	-2.5
1,032,992	+		Psyr_0910	0.78	-0.7
1,032,992	+		Psyr_0910	0.78	+2.0
1,032,992	+		Psyr_0910	0.78	-1.5
1,032,992	+		Psyr_0910	0.78	-0.1
1,032,992	+		Psyr_0910	0.78	-1.7
1,032,992	+		Psyr_0910	0.78	+1.3
1,032,992	+		Psyr_0910	0.78	+1.1
1,032,993	-		Psyr_0910	0.78	+0.9
1,032,993	-		Psyr_0910	0.78	+1.3
1,032,993	-		Psyr_0910	0.78	-0.5
1,032,993	-		Psyr_0910	0.78	+1.8
1,032,993	-		Psyr_0910	0.78	+2.6
1,032,993	-		Psyr_0910	0.78	+0.7
1,032,993	-		Psyr_0910	0.78	+0.8
1,032,993	-		Psyr_0910	0.78	-0.7
1,032,993	-		Psyr_0910	0.78	+1.0
1,033,128	+				-3.2
1,033,176	-				+1.8
1,033,176	-				-0.8
1,033,176	-				-1.9
1,033,191	+				+3.2
1,033,191	+				-1.2
1,033,242	+				+1.7
1,033,242	+				-0.4
1,033,242	+				+0.0
1,033,243	-				+1.2
1,033,243	-				+0.7
1,033,243	-				+0.4
1,033,243	-				+0.6
1,033,243	-				+0.9
1,033,319	+				+2.2
1,033,355	+		Psyr_0911	0.13	+1.3
1,033,355	+		Psyr_0911	0.13	+1.8
1,033,369	+		Psyr_0911	0.15	-0.3
1,033,370	-		Psyr_0911	0.15	-2.3
1,033,395	+		Psyr_0911	0.17	-1.1
1,033,395	+		Psyr_0911	0.17	-0.9
1,033,395	+		Psyr_0911	0.17	-1.1
1,033,396	-		Psyr_0911	0.17	+0.1
1,033,396	-		Psyr_0911	0.17	-0.8
1,033,431	+		Psyr_0911	0.21	+0.2
1,033,483	+		Psyr_0911	0.27	-3.1
1,033,484	-		Psyr_0911	0.27	+1.6
1,033,484	-		Psyr_0911	0.27	-1.5
1,033,484	-		Psyr_0911	0.27	+1.5
1,033,484	-		Psyr_0911	0.27	+0.8
1,033,484	-		Psyr_0911	0.27	-2.5
1,033,484	-		Psyr_0911	0.27	+0.8
1,033,486	+		Psyr_0911	0.27	+0.5
1,033,486	+		Psyr_0911	0.27	+0.8
1,033,567	-		Psyr_0911	0.36	+2.1
1,033,646	+		Psyr_0911	0.44	+1.3
1,033,646	+		Psyr_0911	0.44	+1.9
1,033,646	+		Psyr_0911	0.44	-0.9
1,033,647	-		Psyr_0911	0.44	+0.3
1,033,653	+		Psyr_0911	0.45	+1.2
1,033,693	-		Psyr_0911	0.49	+0.7
1,033,698	+		Psyr_0911	0.49	+0.3
1,033,699	-		Psyr_0911	0.50	+2.7
1,033,736	+		Psyr_0911	0.53	-0.9
1,033,737	-		Psyr_0911	0.54	+2.4
1,033,760	+		Psyr_0911	0.56	-1.6
1,033,760	+		Psyr_0911	0.56	-0.3
1,033,761	-		Psyr_0911	0.56	+0.8
1,033,787	+		Psyr_0911	0.59	+0.8
1,033,926	-		Psyr_0911	0.74	+2.0
1,033,926	-		Psyr_0911	0.74	-3.1
1,033,937	+		Psyr_0911	0.75	+1.6
1,033,946	+		Psyr_0911	0.76	+0.3
1,033,947	-		Psyr_0911	0.76	+0.5
1,033,947	-		Psyr_0911	0.76	-0.5
1,033,947	-		Psyr_0911	0.76	+0.6
1,033,947	-		Psyr_0911	0.76	-1.1
1,033,947	-		Psyr_0911	0.76	+0.5
1,033,955	+		Psyr_0911	0.77	+0.5
1,033,956	-		Psyr_0911	0.77	+2.2
1,033,956	-		Psyr_0911	0.77	-0.2
1,033,994	+		Psyr_0911	0.81	-1.3
1,033,994	+		Psyr_0911	0.81	-0.1
1,033,994	+		Psyr_0911	0.81	+0.8
1,033,994	+		Psyr_0911	0.81	+0.0
1,033,994	+		Psyr_0911	0.81	-2.1
1,033,994	+		Psyr_0911	0.81	-0.2
1,033,995	-		Psyr_0911	0.81	+0.8
1,033,995	-		Psyr_0911	0.81	+0.0
1,033,995	-		Psyr_0911	0.81	+1.6
1,033,995	-		Psyr_0911	0.81	-1.1
1,034,061	-		Psyr_0911	0.88	+0.9
1,034,086	+				+2.1
1,034,087	-				-0.3
1,034,087	-				+0.6
1,034,173	+				-2.5
1,034,173	+				-1.9
1,034,174	-				+1.2
1,034,174	-				-1.9
1,034,174	-				+2.2
1,034,174	-				-0.7
1,034,192	-				-1.7
1,034,220	+				-0.3
1,034,235	+				-2.1
1,034,235	+				-2.0
1,034,235	+				+2.3
1,034,235	+				-1.3
1,034,235	+				-3.1
1,034,235	+				-0.6
1,034,235	+				-1.7
1,034,236	-				-2.3
1,034,236	-				+2.3
1,034,236	-				-0.7
1,034,236	-				+2.7
1,034,236	-				-2.4
1,034,236	-				+1.3
1,034,236	-				+1.3
1,034,237	+				+0.6
1,034,237	+				+1.0
1,034,237	+				+0.7
1,034,237	+				-2.6
1,034,237	+				+2.7
1,034,237	+				-0.1
1,034,237	+				-0.8
1,034,238	-				+0.3
1,034,238	-				-0.1
1,034,238	-				-0.5
1,034,238	-				+1.8
1,034,243	-				+0.7
1,034,301	+				+0.5
1,034,301	+				-0.9
1,034,302	-				+0.8
1,034,302	-				-0.8
1,034,308	-				+1.6
1,034,354	-				-0.5
1,034,388	+				+0.7
1,034,388	+				+0.6
1,034,388	+				-1.4
1,034,388	+				-2.3
1,034,388	+				-0.5
1,034,388	+				+2.5
1,034,388	+				+1.9
1,034,388	+				-1.9
1,034,388	+				-1.1
1,034,388	+				+0.0
1,034,388	+				+0.6
1,034,388	+				+1.5
1,034,388	+				-2.3
1,034,388	+				-1.5
1,034,388	+				+0.2
1,034,388	+				+0.4
1,034,388	+				-1.4
1,034,388	+				-2.3
1,034,388	+				-0.1
1,034,389	-				-1.1
1,034,389	-				+0.5
1,034,389	-				-0.3
1,034,389	-				+0.8
1,034,389	-				-2.5
1,034,389	-				+0.8
1,034,389	-				-1.5
1,034,389	-				-1.9
1,034,389	-				-0.9
1,034,389	-				+1.8
1,034,389	-				-0.3
1,034,389	-				+0.6
1,034,389	-				-3.1
1,034,389	-				+0.0
1,034,389	-				+0.5
1,034,391	+				-2.4
1,034,391	+				-1.2
1,034,391	+				-0.4
1,034,391	+				+0.1
1,034,391	+				-0.8
1,034,391	+				-2.0
1,034,391	+				-0.9
1,034,392	-				+1.2
1,034,392	-				+0.7
1,034,392	-				+2.0
1,034,392	-				-0.8
1,034,392	-				-1.4
1,034,392	-				+1.1
1,034,392	-				+1.3
1,034,392	-				+0.1
1,034,392	-				+0.1
1,034,404	+				-0.4
1,034,404	+				+1.3
1,034,404	+				-2.6
1,034,481	+				+1.0
1,034,481	+				-0.2
1,034,481	+				+0.7
1,034,482	-				+0.9
1,034,482	-				+0.7
1,034,482	-				-1.3
1,034,765	+				+2.7
1,034,766	-				+2.4
1,034,766	-				-3.1