Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0867 and Psyr_0868 are separated by 257 nucleotides Psyr_0868 and Psyr_0869 are separated by 8 nucleotides Psyr_0869 and Psyr_0870 are separated by 81 nucleotides
Psyr_0867: Psyr_0867 - conserved hypothetical protein, at 986,935 to 988,947
_0867
Psyr_0868: Psyr_0868 - Histidine kinase, HAMP region:Bacterial chemotaxis sensory transducer, at 989,205 to 990,845
_0868
Psyr_0869: Psyr_0869 - GCN5-related N-acetyltransferase, at 990,854 to 991,291
_0869
Psyr_0870: Psyr_0870 - GGDEF domain protein, at 991,373 to 992,566
_0870
Position (kb) 989
990
991 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 988.283 kb on + strand, within Psyr_0867 at 988.283 kb on + strand, within Psyr_0867 at 988.284 kb on - strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.286 kb on + strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.287 kb on - strand, within Psyr_0867 at 988.474 kb on - strand, within Psyr_0867 at 988.601 kb on + strand, within Psyr_0867 at 988.630 kb on - strand, within Psyr_0867 at 988.659 kb on - strand, within Psyr_0867 at 988.741 kb on - strand, within Psyr_0867 at 988.765 kb on + strand at 988.765 kb on + strand at 988.766 kb on - strand at 988.769 kb on + strand at 988.770 kb on - strand at 988.770 kb on - strand at 988.770 kb on - strand at 988.846 kb on + strand at 988.888 kb on + strand at 989.014 kb on + strand at 989.015 kb on - strand at 989.015 kb on - strand at 989.015 kb on - strand at 989.081 kb on + strand at 989.082 kb on - strand at 989.129 kb on + strand at 989.129 kb on + strand at 989.129 kb on + strand at 989.129 kb on + strand at 989.129 kb on + strand at 989.130 kb on - strand at 989.130 kb on - strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.135 kb on + strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.136 kb on - strand at 989.176 kb on - strand at 989.218 kb on - strand at 989.218 kb on - strand at 989.218 kb on - strand at 989.218 kb on - strand at 989.290 kb on + strand at 989.290 kb on + strand at 989.291 kb on - strand at 989.291 kb on - strand at 989.293 kb on + strand at 989.293 kb on + strand at 989.294 kb on - strand at 989.294 kb on - strand at 989.342 kb on + strand at 989.422 kb on + strand, within Psyr_0868 at 989.423 kb on - strand, within Psyr_0868 at 989.514 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.674 kb on + strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.675 kb on - strand, within Psyr_0868 at 989.686 kb on - strand, within Psyr_0868 at 989.717 kb on - strand, within Psyr_0868 at 989.717 kb on - strand, within Psyr_0868 at 989.729 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.796 kb on + strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.797 kb on - strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.848 kb on + strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 989.849 kb on - strand, within Psyr_0868 at 990.017 kb on - strand, within Psyr_0868 at 990.017 kb on - strand, within Psyr_0868 at 990.017 kb on - strand, within Psyr_0868 at 990.827 kb on - strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.848 kb on + strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 990.849 kb on - strand at 991.325 kb on + strand at 991.325 kb on + strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.326 kb on - strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.393 kb on + strand at 991.394 kb on - strand at 991.394 kb on - strand at 991.416 kb on + strand at 991.700 kb on - strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.719 kb on + strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.720 kb on - strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.731 kb on + strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870 at 991.732 kb on - strand, within Psyr_0870
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 988,283 + Psyr_0867 0.67 +0.1 988,283 + Psyr_0867 0.67 +0.5 988,284 - Psyr_0867 0.67 +0.4 988,286 + Psyr_0867 0.67 -1.8 988,286 + Psyr_0867 0.67 +1.3 988,286 + Psyr_0867 0.67 -1.2 988,287 - Psyr_0867 0.67 -1.7 988,287 - Psyr_0867 0.67 +0.4 988,287 - Psyr_0867 0.67 +1.5 988,287 - Psyr_0867 0.67 +0.3 988,287 - Psyr_0867 0.67 +1.2 988,287 - Psyr_0867 0.67 +0.9 988,474 - Psyr_0867 0.76 -2.4 988,601 + Psyr_0867 0.83 -0.1 988,630 - Psyr_0867 0.84 -1.7 988,659 - Psyr_0867 0.86 +0.4 988,741 - Psyr_0867 0.90 +1.2 988,765 + +1.3 988,765 + +1.7 988,766 - -1.7 988,769 + +2.6 988,770 - -1.5 988,770 - +0.7 988,770 - -2.7 988,846 + +0.8 988,888 + -2.6 989,014 + -2.6 989,015 - -1.0 989,015 - -0.9 989,015 - +0.4 989,081 + -0.1 989,082 - +1.1 989,129 + +0.6 989,129 + +0.6 989,129 + +0.7 989,129 + +0.9 989,129 + -0.3 989,130 - +1.8 989,130 - +0.9 989,135 + -1.7 989,135 + +1.3 989,135 + -0.3 989,135 + -2.2 989,135 + +0.5 989,135 + +0.5 989,135 + +2.5 989,135 + +0.5 989,135 + -0.3 989,135 + +2.2 989,135 + +0.6 989,135 + +1.0 989,135 + +1.5 989,135 + +1.1 989,135 + -0.9 989,136 - -2.6 989,136 - +0.1 989,136 - -2.0 989,136 - -1.0 989,136 - +1.4 989,136 - +1.3 989,136 - +0.5 989,176 - +1.6 989,218 - +0.3 989,218 - +2.0 989,218 - +0.8 989,218 - +0.8 989,290 + +0.5 989,290 + +0.9 989,291 - -0.7 989,291 - -0.3 989,293 + -1.8 989,293 + +0.5 989,294 - +0.5 989,294 - +0.7 989,342 + +1.4 989,422 + Psyr_0868 0.13 +2.7 989,423 - Psyr_0868 0.13 +0.8 989,514 + Psyr_0868 0.19 -1.3 989,674 + Psyr_0868 0.29 -1.7 989,674 + Psyr_0868 0.29 -1.1 989,674 + Psyr_0868 0.29 -2.4 989,674 + Psyr_0868 0.29 +0.9 989,674 + Psyr_0868 0.29 -1.1 989,674 + Psyr_0868 0.29 -0.8 989,674 + Psyr_0868 0.29 -0.2 989,674 + Psyr_0868 0.29 +0.9 989,674 + Psyr_0868 0.29 -0.6 989,675 - Psyr_0868 0.29 -2.3 989,675 - Psyr_0868 0.29 +1.3 989,675 - Psyr_0868 0.29 +1.1 989,675 - Psyr_0868 0.29 -1.1 989,675 - Psyr_0868 0.29 +0.0 989,675 - Psyr_0868 0.29 +0.5 989,675 - Psyr_0868 0.29 +1.3 989,686 - Psyr_0868 0.29 -2.3 989,717 - Psyr_0868 0.31 +0.9 989,717 - Psyr_0868 0.31 -3.3 989,729 + Psyr_0868 0.32 -0.6 989,796 + Psyr_0868 0.36 -0.1 989,796 + Psyr_0868 0.36 +1.3 989,796 + Psyr_0868 0.36 -1.9 989,796 + Psyr_0868 0.36 -0.4 989,797 - Psyr_0868 0.36 -1.8 989,797 - Psyr_0868 0.36 +0.3 989,797 - Psyr_0868 0.36 -1.8 989,797 - Psyr_0868 0.36 -1.8 989,797 - Psyr_0868 0.36 +0.0 989,797 - Psyr_0868 0.36 +0.7 989,797 - Psyr_0868 0.36 -0.4 989,797 - Psyr_0868 0.36 -1.3 989,797 - Psyr_0868 0.36 -1.2 989,848 + Psyr_0868 0.39 -0.6 989,848 + Psyr_0868 0.39 +0.7 989,848 + Psyr_0868 0.39 +0.3 989,848 + Psyr_0868 0.39 +1.5 989,848 + Psyr_0868 0.39 -1.6 989,848 + Psyr_0868 0.39 -1.1 989,848 + Psyr_0868 0.39 +2.0 989,848 + Psyr_0868 0.39 -1.5 989,848 + Psyr_0868 0.39 -1.0 989,849 - Psyr_0868 0.39 -2.2 989,849 - -1.3 989,849 - Psyr_0868 0.39 +1.3 989,849 - Psyr_0868 0.39 +0.6 989,849 - Psyr_0868 0.39 -0.0 990,017 - Psyr_0868 0.49 -2.7 990,017 - Psyr_0868 0.49 -1.7 990,017 - Psyr_0868 0.49 -1.4 990,827 - -0.8 990,848 + -1.3 990,848 + +0.3 990,848 + -0.8 990,848 + +1.5 990,848 + +0.9 990,848 + +1.0 990,848 + -1.4 990,848 + -1.7 990,849 - -1.0 990,849 - -1.6 990,849 - -1.1 990,849 - +2.6 990,849 - +0.8 990,849 - -1.3 990,849 - +0.5 990,849 - +1.2 990,849 - -0.1 991,325 + +0.2 991,325 + +1.8 991,326 - -2.1 991,326 - -0.5 991,326 - -0.7 991,393 + -1.5 991,393 + -1.9 991,393 + +0.5 991,393 + +1.6 991,394 - +1.1 991,394 - -1.2 991,416 + -2.4 991,700 - Psyr_0870 0.27 -1.5 991,719 + Psyr_0870 0.29 -0.4 991,719 + Psyr_0870 0.29 +0.3 991,719 + Psyr_0870 0.29 -0.3 991,719 + Psyr_0870 0.29 -0.8 991,719 + Psyr_0870 0.29 +1.1 991,719 + Psyr_0870 0.29 -0.1 991,719 + Psyr_0870 0.29 +1.2 991,720 - Psyr_0870 0.29 -1.3 991,720 - Psyr_0870 0.29 +0.9 991,720 - Psyr_0870 0.29 +0.7 991,720 - Psyr_0870 0.29 -2.1 991,720 - Psyr_0870 0.29 -1.5 991,720 - Psyr_0870 0.29 -2.5 991,720 - Psyr_0870 0.29 +1.3 991,731 + Psyr_0870 0.30 -1.5 991,731 + Psyr_0870 0.30 +2.2 991,732 - Psyr_0870 0.30 +1.5 991,732 - Psyr_0870 0.30 -0.5
Or see this region's nucleotide sequence