Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0836

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0835 and Psyr_0836 are separated by 348 nucleotidesPsyr_0836 and Psyr_0837 overlap by 1 nucleotidesPsyr_0837 and Psyr_0838 are separated by 30 nucleotides Psyr_0835: Psyr_0835 - transcriptional regulator, TraR/DksA family, at 947,408 to 947,848 _0835 Psyr_0836: Psyr_0836 - Aminotransferase, class I and II, at 948,197 to 949,369 _0836 Psyr_0837: Psyr_0837 - Sugar fermentation stimulation protein, at 949,369 to 950,082 _0837 Psyr_0838: Psyr_0838 - Rieske [2Fe-2S] region, at 950,113 to 950,511 _0838 Position (kb) 948 949 950Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 947.238 kb on + strandat 947.345 kb on + strandat 947.345 kb on + strandat 947.346 kb on - strandat 947.346 kb on - strandat 947.346 kb on - strandat 947.413 kb on + strandat 947.414 kb on - strandat 947.507 kb on + strand, within Psyr_0835at 947.532 kb on + strand, within Psyr_0835at 947.680 kb on + strand, within Psyr_0835at 947.680 kb on + strand, within Psyr_0835at 947.680 kb on + strand, within Psyr_0835at 947.680 kb on + strand, within Psyr_0835at 947.680 kb on + strand, within Psyr_0835at 947.681 kb on - strand, within Psyr_0835at 947.681 kb on - strand, within Psyr_0835at 947.681 kb on - strand, within Psyr_0835at 947.681 kb on - strand, within Psyr_0835at 947.687 kb on + strand, within Psyr_0835at 947.688 kb on - strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.772 kb on + strand, within Psyr_0835at 947.773 kb on - strand, within Psyr_0835at 947.773 kb on - strand, within Psyr_0835at 947.773 kb on - strand, within Psyr_0835at 947.773 kb on - strand, within Psyr_0835at 947.796 kb on + strand, within Psyr_0835at 947.796 kb on + strand, within Psyr_0835at 947.816 kb on + strandat 947.816 kb on + strandat 947.817 kb on - strandat 947.817 kb on - strandat 947.817 kb on - strandat 947.872 kb on + strandat 947.872 kb on + strandat 947.873 kb on - strandat 947.878 kb on - strandat 947.878 kb on - strandat 947.878 kb on - strandat 947.878 kb on - strandat 947.939 kb on + strandat 947.939 kb on + strandat 947.939 kb on + strandat 947.940 kb on - strandat 947.940 kb on - strandat 947.962 kb on + strandat 947.999 kb on - strandat 948.032 kb on + strandat 948.032 kb on + strandat 948.032 kb on + strandat 948.032 kb on + strandat 948.032 kb on + strandat 948.033 kb on - strandat 948.033 kb on - strandat 948.033 kb on - strandat 948.033 kb on - strandat 948.044 kb on - strandat 948.062 kb on + strandat 948.062 kb on + strandat 948.062 kb on + strandat 948.062 kb on + strandat 948.062 kb on + strandat 948.074 kb on - strandat 948.170 kb on + strandat 948.192 kb on + strandat 948.193 kb on - strandat 948.193 kb on - strandat 948.209 kb on + strandat 948.210 kb on - strandat 948.210 kb on - strandat 948.210 kb on - strandat 948.231 kb on + strandat 948.232 kb on - strandat 948.232 kb on - strandat 948.232 kb on - strandat 948.348 kb on + strand, within Psyr_0836at 948.349 kb on - strand, within Psyr_0836at 948.349 kb on - strand, within Psyr_0836at 948.440 kb on + strand, within Psyr_0836at 948.440 kb on + strand, within Psyr_0836at 948.603 kb on + strand, within Psyr_0836at 948.603 kb on + strand, within Psyr_0836at 948.603 kb on + strand, within Psyr_0836at 948.603 kb on + strand, within Psyr_0836at 948.604 kb on - strand, within Psyr_0836at 948.815 kb on + strand, within Psyr_0836at 948.815 kb on + strand, within Psyr_0836at 948.815 kb on + strand, within Psyr_0836at 948.816 kb on - strand, within Psyr_0836at 948.816 kb on - strand, within Psyr_0836at 948.816 kb on - strand, within Psyr_0836at 948.830 kb on + strand, within Psyr_0836at 948.830 kb on + strand, within Psyr_0836at 948.831 kb on - strand, within Psyr_0836at 948.831 kb on - strand, within Psyr_0836at 948.831 kb on - strand, within Psyr_0836at 948.831 kb on - strand, within Psyr_0836at 948.899 kb on + strand, within Psyr_0836at 948.900 kb on - strand, within Psyr_0836at 948.986 kb on + strand, within Psyr_0836at 948.987 kb on - strand, within Psyr_0836at 949.157 kb on + strand, within Psyr_0836at 949.157 kb on + strand, within Psyr_0836at 949.157 kb on + strand, within Psyr_0836at 949.157 kb on + strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.158 kb on - strand, within Psyr_0836at 949.163 kb on + strand, within Psyr_0836at 949.163 kb on + strand, within Psyr_0836at 949.163 kb on + strand, within Psyr_0836at 949.164 kb on - strand, within Psyr_0836at 949.240 kb on + strand, within Psyr_0836at 949.296 kb on - strandat 949.354 kb on + strandat 949.355 kb on - strandat 949.415 kb on - strandat 949.605 kb on + strand, within Psyr_0837at 949.606 kb on - strand, within Psyr_0837at 949.626 kb on + strand, within Psyr_0837at 949.626 kb on + strand, within Psyr_0837at 949.762 kb on + strand, within Psyr_0837at 949.762 kb on + strand, within Psyr_0837at 949.763 kb on - strand, within Psyr_0837at 949.763 kb on - strand, within Psyr_0837at 949.903 kb on + strand, within Psyr_0837at 949.903 kb on + strand, within Psyr_0837at 949.903 kb on + strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 949.904 kb on - strand, within Psyr_0837at 950.094 kb on - strandat 950.333 kb on + strand, within Psyr_0838

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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947,238 + -0.0
947,345 + +0.6
947,345 + +1.0
947,346 - +1.0
947,346 - -0.0
947,346 - +0.8
947,413 + +0.9
947,414 - -0.1
947,507 + Psyr_0835 0.22 -1.9
947,532 + Psyr_0835 0.28 +1.6
947,680 + Psyr_0835 0.62 +1.1
947,680 + Psyr_0835 0.62 -0.5
947,680 + Psyr_0835 0.62 +0.9
947,680 + Psyr_0835 0.62 -0.9
947,680 + Psyr_0835 0.62 -0.3
947,681 - Psyr_0835 0.62 -1.3
947,681 - Psyr_0835 0.62 -1.5
947,681 - Psyr_0835 0.62 -0.7
947,681 - Psyr_0835 0.62 -0.5
947,687 + Psyr_0835 0.63 -0.5
947,688 - Psyr_0835 0.63 -2.3
947,772 + Psyr_0835 0.83 +0.5
947,772 + Psyr_0835 0.83 -1.1
947,772 + Psyr_0835 0.83 -0.1
947,772 + Psyr_0835 0.83 -0.1
947,772 + Psyr_0835 0.83 -1.1
947,772 + Psyr_0835 0.83 -0.9
947,772 + Psyr_0835 0.83 +0.7
947,772 + Psyr_0835 0.83 -0.1
947,772 + Psyr_0835 0.83 +1.6
947,772 + Psyr_0835 0.83 -0.3
947,772 + Psyr_0835 0.83 +0.8
947,773 - Psyr_0835 0.83 -0.5
947,773 - Psyr_0835 0.83 -1.1
947,773 - Psyr_0835 0.83 -3.1
947,773 - Psyr_0835 0.83 -0.4
947,796 + Psyr_0835 0.88 -0.9
947,796 + Psyr_0835 0.88 +0.9
947,816 + -1.9
947,816 + -1.9
947,817 - +0.9
947,817 - -0.1
947,817 - +3.4
947,872 + -0.1
947,872 + -0.9
947,873 - -1.2
947,878 - -0.9
947,878 - -2.4
947,878 - -3.3
947,878 - -0.5
947,939 + +1.2
947,939 + -0.5
947,939 + +1.1
947,940 - +1.2
947,940 - +0.4
947,962 + +0.7
947,999 - -2.1
948,032 + -1.1
948,032 + +1.1
948,032 + -1.1
948,032 + +0.2
948,032 + +1.5
948,033 - +0.5
948,033 - -1.3
948,033 - -0.8
948,033 - -1.5
948,044 - -0.5
948,062 + -2.8
948,062 + +0.0
948,062 + -0.2
948,062 + -3.2
948,062 + -1.3
948,074 - +0.8
948,170 + +1.8
948,192 + -0.1
948,193 - -0.5
948,193 - -2.0
948,209 + +0.5
948,210 - -1.9
948,210 - +1.0
948,210 - +0.9
948,231 + +0.2
948,232 - +0.7
948,232 - +2.0
948,232 - -0.6
948,348 + Psyr_0836 0.13 -0.5
948,349 - Psyr_0836 0.13 +1.5
948,349 - Psyr_0836 0.13 +0.0
948,440 + Psyr_0836 0.21 -2.5
948,440 + Psyr_0836 0.21 -1.5
948,603 + Psyr_0836 0.35 -0.9
948,603 + Psyr_0836 0.35 +0.3
948,603 + Psyr_0836 0.35 -0.3
948,603 + Psyr_0836 0.35 +1.3
948,604 - Psyr_0836 0.35 -2.0
948,815 + Psyr_0836 0.53 -2.2
948,815 + Psyr_0836 0.53 -1.3
948,815 + Psyr_0836 0.53 -2.3
948,816 - Psyr_0836 0.53 -1.5
948,816 - Psyr_0836 0.53 +0.2
948,816 - Psyr_0836 0.53 +3.0
948,830 + Psyr_0836 0.54 +1.7
948,830 + Psyr_0836 0.54 -1.0
948,831 - Psyr_0836 0.54 +0.7
948,831 - Psyr_0836 0.54 +0.7
948,831 - Psyr_0836 0.54 -2.0
948,831 - Psyr_0836 0.54 -0.9
948,899 + Psyr_0836 0.60 +0.4
948,900 - Psyr_0836 0.60 +0.1
948,986 + Psyr_0836 0.67 -1.0
948,987 - Psyr_0836 0.67 +0.9
949,157 + Psyr_0836 0.82 +2.4
949,157 + Psyr_0836 0.82 -0.1
949,157 + Psyr_0836 0.82 -0.3
949,157 + Psyr_0836 0.82 +1.5
949,158 - Psyr_0836 0.82 -2.1
949,158 - Psyr_0836 0.82 +0.3
949,158 - Psyr_0836 0.82 +2.2
949,158 - Psyr_0836 0.82 -1.0
949,158 - Psyr_0836 0.82 +2.3
949,158 - Psyr_0836 0.82 +2.6
949,163 + Psyr_0836 0.82 +2.1
949,163 + Psyr_0836 0.82 -1.1
949,163 + Psyr_0836 0.82 +0.2
949,164 - Psyr_0836 0.82 +1.0
949,240 + Psyr_0836 0.89 -1.1
949,296 - -0.9
949,354 + +0.3
949,355 - -1.4
949,415 - -0.4
949,605 + Psyr_0837 0.33 +1.1
949,606 - Psyr_0837 0.33 +2.1
949,626 + Psyr_0837 0.36 -1.9
949,626 + Psyr_0837 0.36 -2.2
949,762 + Psyr_0837 0.55 +0.7
949,762 + Psyr_0837 0.55 -0.5
949,763 - Psyr_0837 0.55 +1.2
949,763 - Psyr_0837 0.55 -2.4
949,903 + Psyr_0837 0.75 -1.5
949,903 + Psyr_0837 0.75 +0.2
949,903 + Psyr_0837 0.75 +0.2
949,904 - Psyr_0837 0.75 -0.5
949,904 - Psyr_0837 0.75 -0.8
949,904 - Psyr_0837 0.75 +2.6
949,904 - Psyr_0837 0.75 +2.5
949,904 - Psyr_0837 0.75 +1.1
949,904 - Psyr_0837 0.75 +2.4
950,094 - +0.7
950,333 + Psyr_0838 0.55 -1.9

Or see this region's nucleotide sequence