Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0808

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0806 and Psyr_0807 are separated by 0 nucleotidesPsyr_0807 and Psyr_0808 are separated by 46 nucleotidesPsyr_0808 and Psyr_0809 overlap by 4 nucleotides Psyr_0806: Psyr_0806 - conserved hypothetical protein, at 911,918 to 912,868 _0806 Psyr_0807: Psyr_0807 - HAD-superfamily hydrolase, subfamily IB (PSPase-like):HAD-superfamily subfamily IB hydrolase, hypothetical 2, at 912,869 to 913,615 _0807 Psyr_0808: Psyr_0808 - stress protein, at 913,662 to 914,255 _0808 Psyr_0809: Psyr_0809 - stress protein, at 914,252 to 915,421 _0809 Position (kb) 913 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 912.728 kb on + strand, within Psyr_0806at 912.728 kb on + strand, within Psyr_0806at 912.728 kb on + strand, within Psyr_0806at 912.728 kb on + strand, within Psyr_0806at 912.729 kb on - strand, within Psyr_0806at 912.761 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.763 kb on + strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.764 kb on - strand, within Psyr_0806at 912.862 kb on + strandat 912.862 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.866 kb on + strandat 912.867 kb on - strandat 912.867 kb on - strandat 912.867 kb on - strandat 912.867 kb on - strandat 912.867 kb on - strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.873 kb on + strandat 912.874 kb on - strandat 912.874 kb on - strandat 913.079 kb on + strand, within Psyr_0807at 913.323 kb on + strand, within Psyr_0807at 913.324 kb on - strand, within Psyr_0807at 913.324 kb on - strand, within Psyr_0807at 913.553 kb on + strandat 913.556 kb on - strandat 913.556 kb on - strandat 913.578 kb on + strandat 913.622 kb on - strandat 913.715 kb on + strandat 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.995 kb on + strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 913.996 kb on - strand, within Psyr_0808at 914.063 kb on + strand, within Psyr_0808at 914.063 kb on + strand, within Psyr_0808at 914.064 kb on - strand, within Psyr_0808at 914.085 kb on - strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.145 kb on + strand, within Psyr_0808at 914.146 kb on - strand, within Psyr_0808at 914.243 kb on + strandat 914.251 kb on + strandat 914.252 kb on - strandat 914.252 kb on - strandat 914.314 kb on + strandat 914.315 kb on - strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.318 kb on + strandat 914.473 kb on - strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.537 kb on + strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.538 kb on - strand, within Psyr_0809at 914.658 kb on - strand, within Psyr_0809at 914.918 kb on - strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.959 kb on + strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.960 kb on - strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.979 kb on + strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 914.980 kb on - strand, within Psyr_0809at 915.124 kb on + strand, within Psyr_0809at 915.167 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.179 kb on + strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809at 915.180 kb on - strand, within Psyr_0809

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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912,728 + Psyr_0806 0.85 -2.0
912,728 + Psyr_0806 0.85 -1.9
912,728 + Psyr_0806 0.85 -2.3
912,728 + Psyr_0806 0.85 -1.1
912,729 - Psyr_0806 0.85 +2.9
912,761 + Psyr_0806 0.89 +0.0
912,763 + Psyr_0806 0.89 -1.7
912,763 + Psyr_0806 0.89 +1.3
912,763 + Psyr_0806 0.89 -1.9
912,763 + Psyr_0806 0.89 -0.5
912,763 + Psyr_0806 0.89 -0.8
912,763 + Psyr_0806 0.89 +0.7
912,763 + Psyr_0806 0.89 +2.3
912,763 + Psyr_0806 0.89 +0.0
912,763 + Psyr_0806 0.89 -0.4
912,764 - Psyr_0806 0.89 -0.1
912,764 - Psyr_0806 0.89 +1.3
912,764 - Psyr_0806 0.89 -1.9
912,862 + -0.6
912,862 + -0.3
912,866 + +1.8
912,866 + -1.1
912,866 + +0.3
912,866 + -0.9
912,866 + -0.2
912,867 - -0.1
912,867 - +1.5
912,867 - +1.3
912,867 - -1.1
912,867 - +0.6
912,873 + +2.9
912,873 + -1.6
912,873 + +1.2
912,873 + -2.6
912,873 + -0.1
912,873 + -3.1
912,874 - -2.2
912,874 - +1.3
913,079 + Psyr_0807 0.28 -1.7
913,323 + Psyr_0807 0.61 -0.7
913,324 - Psyr_0807 0.61 +1.5
913,324 - Psyr_0807 0.61 -0.1
913,553 + +1.0
913,556 - -1.1
913,556 - +0.7
913,578 + -0.8
913,622 - +1.1
913,715 + +0.8
913,995 + Psyr_0808 0.56 +0.4
913,995 + Psyr_0808 0.56 +2.0
913,995 + Psyr_0808 0.56 -2.5
913,996 - Psyr_0808 0.56 -0.7
913,996 - Psyr_0808 0.56 -0.4
913,996 - Psyr_0808 0.56 -2.7
913,996 - Psyr_0808 0.56 +1.5
913,996 - Psyr_0808 0.56 -2.0
913,996 - Psyr_0808 0.56 +1.0
913,996 - Psyr_0808 0.56 +1.3
913,996 - Psyr_0808 0.56 -1.3
914,063 + Psyr_0808 0.68 +3.2
914,063 + Psyr_0808 0.68 +1.9
914,064 - Psyr_0808 0.68 +2.0
914,085 - Psyr_0808 0.71 -0.9
914,145 + Psyr_0808 0.81 +0.6
914,145 + Psyr_0808 0.81 +0.6
914,145 + Psyr_0808 0.81 +1.7
914,146 - Psyr_0808 0.81 -0.6
914,243 + +0.2
914,251 + +0.9
914,252 - -0.7
914,252 - -1.1
914,314 + -0.2
914,315 - -2.2
914,318 + +1.3
914,318 + +1.5
914,318 + -0.6
914,473 - Psyr_0809 0.19 +0.9
914,537 + Psyr_0809 0.24 -0.5
914,537 + Psyr_0809 0.24 -0.4
914,537 + Psyr_0809 0.24 +0.7
914,537 + Psyr_0809 0.24 +0.1
914,537 + Psyr_0809 0.24 +1.2
914,537 + Psyr_0809 0.24 -0.4
914,537 + Psyr_0809 0.24 +0.5
914,537 + Psyr_0809 0.24 -0.3
914,538 - Psyr_0809 0.24 -1.0
914,538 - Psyr_0809 0.24 +1.4
914,538 - Psyr_0809 0.24 +0.1
914,538 - Psyr_0809 0.24 -0.7
914,538 - Psyr_0809 0.24 -1.6
914,538 - Psyr_0809 0.24 +0.9
914,538 - Psyr_0809 0.24 +0.9
914,538 - Psyr_0809 0.24 -0.1
914,658 - Psyr_0809 0.35 -0.5
914,918 - Psyr_0809 0.57 +0.9
914,959 + Psyr_0809 0.60 -1.2
914,959 + Psyr_0809 0.60 +1.1
914,959 + Psyr_0809 0.60 +2.3
914,959 + Psyr_0809 0.60 -0.8
914,960 - Psyr_0809 0.61 -0.4
914,960 - Psyr_0809 0.61 +0.1
914,979 + Psyr_0809 0.62 -0.1
914,979 + Psyr_0809 0.62 -2.5
914,979 + Psyr_0809 0.62 +0.5
914,979 + Psyr_0809 0.62 -2.3
914,979 + Psyr_0809 0.62 -0.7
914,979 + Psyr_0809 0.62 -1.6
914,979 + Psyr_0809 0.62 -0.4
914,979 + Psyr_0809 0.62 +1.6
914,980 - Psyr_0809 0.62 +0.8
914,980 - Psyr_0809 0.62 -3.6
914,980 - Psyr_0809 0.62 -1.1
914,980 - Psyr_0809 0.62 +1.2
914,980 - Psyr_0809 0.62 -0.9
914,980 - Psyr_0809 0.62 -0.8
914,980 - Psyr_0809 0.62 +2.8
914,980 - Psyr_0809 0.62 -0.8
915,124 + Psyr_0809 0.75 -0.7
915,167 + Psyr_0809 0.78 -0.1
915,179 + Psyr_0809 0.79 -0.3
915,179 + Psyr_0809 0.79 +0.7
915,179 + Psyr_0809 0.79 -0.9
915,179 + Psyr_0809 0.79 -2.9
915,179 + Psyr_0809 0.79 +0.5
915,179 + Psyr_0809 0.79 -1.4
915,179 + Psyr_0809 0.79 +1.0
915,180 - Psyr_0809 0.79 -1.9
915,180 - Psyr_0809 0.79 -0.4
915,180 - Psyr_0809 0.79 +0.5
915,180 - Psyr_0809 0.79 -1.7
915,180 - Psyr_0809 0.79 +0.1
915,180 - Psyr_0809 0.79 +3.6
915,180 - Psyr_0809 0.79 +1.8
915,180 - Psyr_0809 0.79 +0.7
915,180 - Psyr_0809 0.79 -0.4
915,180 - Psyr_0809 0.79 -0.0
915,180 - Psyr_0809 0.79 +1.5
915,180 - Psyr_0809 0.79 -1.3

Or see this region's nucleotide sequence