Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0801

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0799 and Psyr_0800 are separated by 174 nucleotidesPsyr_0800 and Psyr_0801 are separated by 119 nucleotidesPsyr_0801 and Psyr_0802 are separated by 54 nucleotides Psyr_0799: Psyr_0799 - Fimbrial protein pilin, at 905,429 to 905,848 _0799 Psyr_0800: Psyr_0800 - Protein of unknown function DUF1523, at 906,023 to 906,568 _0800 Psyr_0801: Psyr_0801 - conserved hypothetical protein, at 906,688 to 907,686 _0801 Psyr_0802: Psyr_0802 - Peptidase S1, chymotrypsin, at 907,741 to 908,880 _0802 Position (kb) 906 907 908Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 905.716 kb on + strand, within Psyr_0799at 905.717 kb on - strand, within Psyr_0799at 905.717 kb on - strand, within Psyr_0799at 905.722 kb on + strand, within Psyr_0799at 905.722 kb on + strand, within Psyr_0799at 905.723 kb on - strand, within Psyr_0799at 905.723 kb on - strand, within Psyr_0799at 905.723 kb on - strand, within Psyr_0799at 905.725 kb on + strand, within Psyr_0799at 905.726 kb on - strand, within Psyr_0799at 905.733 kb on + strand, within Psyr_0799at 905.734 kb on - strand, within Psyr_0799at 905.734 kb on - strand, within Psyr_0799at 905.779 kb on + strand, within Psyr_0799at 905.779 kb on + strand, within Psyr_0799at 905.779 kb on + strand, within Psyr_0799at 905.839 kb on + strandat 905.839 kb on + strandat 905.839 kb on + strandat 905.846 kb on + strandat 905.847 kb on - strandat 905.861 kb on + strandat 905.861 kb on + strandat 905.861 kb on + strandat 905.862 kb on - strandat 905.862 kb on - strandat 905.862 kb on - strandat 905.881 kb on + strandat 906.007 kb on + strandat 906.024 kb on + strandat 906.058 kb on + strandat 906.058 kb on + strandat 906.058 kb on + strandat 906.059 kb on - strandat 906.217 kb on - strand, within Psyr_0800at 906.219 kb on + strand, within Psyr_0800at 906.256 kb on - strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.381 kb on + strand, within Psyr_0800at 906.382 kb on - strand, within Psyr_0800at 906.382 kb on - strand, within Psyr_0800at 906.382 kb on - strand, within Psyr_0800at 906.382 kb on - strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.495 kb on + strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.496 kb on - strand, within Psyr_0800at 906.498 kb on + strand, within Psyr_0800at 906.498 kb on + strand, within Psyr_0800at 906.498 kb on + strand, within Psyr_0800at 906.499 kb on - strand, within Psyr_0800at 906.499 kb on - strand, within Psyr_0800at 906.499 kb on - strand, within Psyr_0800at 906.499 kb on - strand, within Psyr_0800at 906.499 kb on - strand, within Psyr_0800at 906.507 kb on - strand, within Psyr_0800at 906.533 kb on + strandat 906.569 kb on - strandat 906.637 kb on + strandat 906.638 kb on - strandat 906.638 kb on - strandat 906.734 kb on + strandat 906.734 kb on + strandat 906.735 kb on - strandat 906.915 kb on + strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.916 kb on - strand, within Psyr_0801at 906.917 kb on + strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.918 kb on - strand, within Psyr_0801at 906.928 kb on + strand, within Psyr_0801at 906.928 kb on + strand, within Psyr_0801at 907.162 kb on + strand, within Psyr_0801at 907.162 kb on + strand, within Psyr_0801at 907.252 kb on + strand, within Psyr_0801at 907.252 kb on + strand, within Psyr_0801at 907.253 kb on - strand, within Psyr_0801at 907.257 kb on + strand, within Psyr_0801at 907.258 kb on - strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.306 kb on + strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.307 kb on - strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.424 kb on + strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.425 kb on - strand, within Psyr_0801at 907.552 kb on + strand, within Psyr_0801at 907.585 kb on - strand, within Psyr_0801at 907.723 kb on + strandat 907.723 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.775 kb on + strandat 907.776 kb on - strandat 907.812 kb on + strandat 907.813 kb on - strandat 907.834 kb on + strandat 907.835 kb on - strandat 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.008 kb on + strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.009 kb on - strand, within Psyr_0802at 908.014 kb on + strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.015 kb on - strand, within Psyr_0802at 908.134 kb on + strand, within Psyr_0802at 908.134 kb on + strand, within Psyr_0802at 908.135 kb on - strand, within Psyr_0802at 908.186 kb on - strand, within Psyr_0802at 908.365 kb on + strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.366 kb on - strand, within Psyr_0802at 908.389 kb on + strand, within Psyr_0802at 908.389 kb on + strand, within Psyr_0802at 908.473 kb on - strand, within Psyr_0802at 908.508 kb on + strand, within Psyr_0802at 908.577 kb on + strand, within Psyr_0802

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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905,716 + Psyr_0799 0.68 +0.7
905,717 - Psyr_0799 0.69 -0.3
905,717 - Psyr_0799 0.69 -2.0
905,722 + Psyr_0799 0.70 -2.4
905,722 + Psyr_0799 0.70 -1.7
905,723 - Psyr_0799 0.70 +0.2
905,723 - Psyr_0799 0.70 -0.5
905,723 - Psyr_0799 0.70 -0.1
905,725 + Psyr_0799 0.70 +1.0
905,726 - Psyr_0799 0.71 +0.1
905,733 + Psyr_0799 0.72 -0.7
905,734 - Psyr_0799 0.73 -2.3
905,734 - Psyr_0799 0.73 -2.3
905,779 + Psyr_0799 0.83 +0.1
905,779 + Psyr_0799 0.83 +1.5
905,779 + Psyr_0799 0.83 -2.6
905,839 + +1.5
905,839 + +0.5
905,839 + -1.1
905,846 + -0.4
905,847 - -0.7
905,861 + -1.7
905,861 + -2.9
905,861 + +3.0
905,862 - +1.1
905,862 - +0.5
905,862 - +0.9
905,881 + +0.9
906,007 + +0.1
906,024 + -0.3
906,058 + +1.0
906,058 + -1.1
906,058 + +3.3
906,059 - +1.3
906,217 - Psyr_0800 0.36 -2.2
906,219 + Psyr_0800 0.36 +0.8
906,256 - Psyr_0800 0.43 +1.3
906,381 + Psyr_0800 0.66 -0.5
906,381 + Psyr_0800 0.66 -2.9
906,381 + Psyr_0800 0.66 -0.5
906,381 + Psyr_0800 0.66 -2.9
906,381 + Psyr_0800 0.66 -0.8
906,381 + Psyr_0800 0.66 +1.7
906,381 + Psyr_0800 0.66 -0.5
906,382 - Psyr_0800 0.66 +1.5
906,382 - Psyr_0800 0.66 +0.5
906,382 - Psyr_0800 0.66 +3.5
906,382 - Psyr_0800 0.66 +0.9
906,495 + Psyr_0800 0.86 +0.6
906,495 + Psyr_0800 0.86 +0.7
906,495 + Psyr_0800 0.86 +1.4
906,495 + Psyr_0800 0.86 +1.2
906,495 + Psyr_0800 0.86 -0.7
906,495 + Psyr_0800 0.86 +2.7
906,496 - Psyr_0800 0.87 +0.7
906,496 - Psyr_0800 0.87 -1.7
906,496 - Psyr_0800 0.87 -2.8
906,496 - Psyr_0800 0.87 +0.2
906,496 - Psyr_0800 0.87 -1.2
906,496 - Psyr_0800 0.87 -0.3
906,496 - Psyr_0800 0.87 -1.0
906,498 + Psyr_0800 0.87 +0.9
906,498 + Psyr_0800 0.87 -0.4
906,498 + Psyr_0800 0.87 -1.2
906,499 - Psyr_0800 0.87 +0.8
906,499 - Psyr_0800 0.87 +0.3
906,499 - Psyr_0800 0.87 +0.1
906,499 - Psyr_0800 0.87 +0.7
906,499 - Psyr_0800 0.87 -1.9
906,507 - Psyr_0800 0.89 +0.6
906,533 + +0.8
906,569 - +0.7
906,637 + +0.0
906,638 - +1.9
906,638 - -1.0
906,734 + +1.1
906,734 + +0.5
906,735 - +0.5
906,915 + Psyr_0801 0.23 -1.9
906,916 - Psyr_0801 0.23 -2.1
906,916 - Psyr_0801 0.23 +2.5
906,916 - Psyr_0801 0.23 +0.5
906,917 + Psyr_0801 0.23 -0.5
906,918 - Psyr_0801 0.23 +1.5
906,918 - Psyr_0801 0.23 -0.9
906,918 - Psyr_0801 0.23 -0.4
906,928 + Psyr_0801 0.24 -2.3
906,928 + Psyr_0801 0.24 -0.3
907,162 + Psyr_0801 0.47 -0.3
907,162 + Psyr_0801 0.47 +2.9
907,252 + Psyr_0801 0.56 +0.5
907,252 + Psyr_0801 0.56 +1.7
907,253 - Psyr_0801 0.57 -0.2
907,257 + Psyr_0801 0.57 -0.2
907,258 - Psyr_0801 0.57 -0.6
907,306 + Psyr_0801 0.62 -0.9
907,306 + Psyr_0801 0.62 -1.7
907,306 + Psyr_0801 0.62 +0.2
907,306 + Psyr_0801 0.62 +1.8
907,306 + Psyr_0801 0.62 +1.7
907,307 - Psyr_0801 0.62 -1.8
907,307 - Psyr_0801 0.62 +0.7
907,307 - Psyr_0801 0.62 +0.8
907,307 - Psyr_0801 0.62 -2.0
907,307 - Psyr_0801 0.62 +1.8
907,424 + Psyr_0801 0.74 +0.5
907,424 + Psyr_0801 0.74 +0.3
907,424 + Psyr_0801 0.74 -0.1
907,425 - Psyr_0801 0.74 -1.3
907,425 - Psyr_0801 0.74 +1.6
907,425 - Psyr_0801 0.74 +1.0
907,552 + Psyr_0801 0.86 +0.9
907,585 - Psyr_0801 0.90 +1.3
907,723 + -0.8
907,723 + +0.4
907,775 + +1.8
907,775 + -3.2
907,775 + -2.9
907,775 + -0.7
907,775 + -2.3
907,775 + +0.1
907,775 + +2.6
907,775 + +1.2
907,775 + -0.7
907,776 - +0.8
907,812 + -0.9
907,813 - +3.0
907,834 + -0.8
907,835 - +1.5
908,008 + Psyr_0802 0.23 -0.1
908,008 + Psyr_0802 0.23 -1.7
908,008 + Psyr_0802 0.23 +0.0
908,008 + Psyr_0802 0.23 +1.0
908,008 + Psyr_0802 0.23 -2.2
908,008 + Psyr_0802 0.23 +0.3
908,008 + Psyr_0802 0.23 -1.7
908,008 + Psyr_0802 0.23 +0.1
908,008 + Psyr_0802 0.23 +1.0
908,008 + Psyr_0802 0.23 -0.2
908,008 + Psyr_0802 0.23 +1.7
908,008 + Psyr_0802 0.23 -0.5
908,008 + Psyr_0802 0.23 +1.0
908,008 + Psyr_0802 0.23 -3.2
908,008 + Psyr_0802 0.23 -0.8
908,008 + Psyr_0802 0.23 -2.2
908,008 + Psyr_0802 0.23 +1.1
908,008 + Psyr_0802 0.23 -1.5
908,009 - Psyr_0802 0.24 -1.5
908,009 - Psyr_0802 0.24 -1.8
908,009 - Psyr_0802 0.24 -2.9
908,009 - Psyr_0802 0.24 -1.9
908,009 - Psyr_0802 0.24 +1.9
908,009 - Psyr_0802 0.24 +0.3
908,009 - Psyr_0802 0.24 +0.5
908,009 - Psyr_0802 0.24 +0.9
908,009 - Psyr_0802 0.24 +1.8
908,009 - Psyr_0802 0.24 -1.1
908,009 - Psyr_0802 0.24 -2.5
908,009 - Psyr_0802 0.24 +1.3
908,009 - Psyr_0802 0.24 +0.7
908,009 - Psyr_0802 0.24 +3.1
908,009 - Psyr_0802 0.24 -1.3
908,009 - Psyr_0802 0.24 -0.2
908,009 - Psyr_0802 0.24 -0.8
908,014 + Psyr_0802 0.24 -1.1
908,015 - Psyr_0802 0.24 +0.2
908,015 - Psyr_0802 0.24 +0.3
908,015 - Psyr_0802 0.24 +1.5
908,015 - Psyr_0802 0.24 -1.2
908,134 + Psyr_0802 0.34 -2.2
908,134 + Psyr_0802 0.34 -0.3
908,135 - Psyr_0802 0.35 +1.5
908,186 - Psyr_0802 0.39 -1.0
908,365 + Psyr_0802 0.55 +0.0
908,366 - Psyr_0802 0.55 -1.3
908,366 - Psyr_0802 0.55 +3.2
908,366 - Psyr_0802 0.55 -0.5
908,366 - Psyr_0802 0.55 -0.2
908,366 - Psyr_0802 0.55 +0.7
908,366 - Psyr_0802 0.55 +0.0
908,366 - Psyr_0802 0.55 +0.7
908,366 - Psyr_0802 0.55 +0.5
908,366 - Psyr_0802 0.55 +0.0
908,366 - Psyr_0802 0.55 +1.6
908,389 + Psyr_0802 0.57 +2.2
908,389 + Psyr_0802 0.57 +0.7
908,473 - Psyr_0802 0.64 -2.2
908,508 + Psyr_0802 0.67 +1.5
908,577 + Psyr_0802 0.73 +5.5

Or see this region's nucleotide sequence