Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0352

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0351 and Psyr_0352 are separated by 384 nucleotidesPsyr_0352 and Psyr_0353 overlap by 1 nucleotides Psyr_0351: Psyr_0351 - NLPA lipoprotein, at 375,218 to 376,006 _0351 Psyr_0352: Psyr_0352 - monooxygenase, DszA family, at 376,391 to 377,749 _0352 Psyr_0353: Psyr_0353 - Acyl-CoA dehydrogenase, C-terminal, at 377,749 to 378,954 _0353 Position (kb) 376 377 378Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 375.432 kb on + strand, within Psyr_0351at 375.432 kb on + strand, within Psyr_0351at 375.432 kb on + strand, within Psyr_0351at 375.432 kb on + strand, within Psyr_0351at 375.433 kb on - strand, within Psyr_0351at 375.468 kb on + strand, within Psyr_0351at 375.646 kb on + strand, within Psyr_0351at 375.646 kb on + strand, within Psyr_0351at 375.647 kb on - strand, within Psyr_0351at 375.678 kb on + strand, within Psyr_0351at 375.678 kb on + strand, within Psyr_0351at 375.679 kb on - strand, within Psyr_0351at 375.679 kb on - strand, within Psyr_0351at 375.679 kb on - strand, within Psyr_0351at 375.679 kb on - strand, within Psyr_0351at 375.679 kb on - strand, within Psyr_0351at 375.690 kb on + strand, within Psyr_0351at 375.786 kb on + strand, within Psyr_0351at 375.786 kb on + strand, within Psyr_0351at 375.787 kb on - strand, within Psyr_0351at 375.787 kb on - strand, within Psyr_0351at 376.057 kb on - strandat 376.078 kb on + strandat 376.078 kb on + strandat 376.078 kb on + strandat 376.078 kb on + strandat 376.078 kb on + strandat 376.079 kb on - strandat 376.079 kb on - strandat 376.079 kb on - strandat 376.123 kb on + strandat 376.123 kb on + strandat 376.123 kb on + strandat 376.124 kb on - strandat 376.124 kb on - strandat 376.124 kb on - strandat 376.124 kb on - strandat 376.124 kb on - strandat 376.182 kb on + strandat 376.182 kb on + strandat 376.182 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.259 kb on + strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.260 kb on - strandat 376.304 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.396 kb on + strandat 376.397 kb on - strandat 376.494 kb on + strandat 376.494 kb on + strandat 376.494 kb on + strandat 376.494 kb on + strandat 376.494 kb on + strandat 376.495 kb on - strandat 376.545 kb on + strand, within Psyr_0352at 376.546 kb on - strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.656 kb on + strand, within Psyr_0352at 376.657 kb on - strand, within Psyr_0352at 376.657 kb on - strand, within Psyr_0352at 376.657 kb on - strand, within Psyr_0352at 376.657 kb on - strand, within Psyr_0352at 376.756 kb on - strand, within Psyr_0352at 377.130 kb on + strand, within Psyr_0352at 377.178 kb on + strand, within Psyr_0352at 377.179 kb on - strand, within Psyr_0352at 377.179 kb on - strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.241 kb on + strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.242 kb on - strand, within Psyr_0352at 377.409 kb on + strand, within Psyr_0352at 377.410 kb on - strand, within Psyr_0352at 377.421 kb on + strand, within Psyr_0352at 377.422 kb on - strand, within Psyr_0352at 377.422 kb on - strand, within Psyr_0352at 377.507 kb on + strand, within Psyr_0352at 377.550 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.559 kb on + strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.560 kb on - strand, within Psyr_0352at 377.635 kb on - strandat 377.775 kb on + strandat 377.789 kb on + strandat 377.789 kb on + strandat 377.789 kb on + strandat 377.790 kb on - strandat 377.790 kb on - strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.792 kb on + strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.793 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 377.839 kb on - strandat 378.253 kb on - strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.302 kb on + strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.303 kb on - strand, within Psyr_0353at 378.447 kb on + strand, within Psyr_0353at 378.447 kb on + strand, within Psyr_0353at 378.448 kb on - strand, within Psyr_0353at 378.458 kb on + strand, within Psyr_0353at 378.459 kb on - strand, within Psyr_0353at 378.459 kb on - strand, within Psyr_0353at 378.583 kb on + strand, within Psyr_0353at 378.606 kb on - strand, within Psyr_0353

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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375,432 + Psyr_0351 0.27 -1.6
375,432 + Psyr_0351 0.27 +0.3
375,432 + Psyr_0351 0.27 +0.1
375,432 + Psyr_0351 0.27 -2.3
375,433 - Psyr_0351 0.27 -0.4
375,468 + Psyr_0351 0.32 +2.4
375,646 + Psyr_0351 0.54 +1.0
375,646 + Psyr_0351 0.54 -1.6
375,647 - Psyr_0351 0.54 -0.4
375,678 + Psyr_0351 0.58 -0.4
375,678 + Psyr_0351 0.58 -1.0
375,679 - Psyr_0351 0.58 +1.1
375,679 - Psyr_0351 0.58 -3.1
375,679 - Psyr_0351 0.58 +0.9
375,679 - Psyr_0351 0.58 -2.1
375,679 - Psyr_0351 0.58 +1.1
375,690 + Psyr_0351 0.60 +0.0
375,786 + Psyr_0351 0.72 -0.2
375,786 + Psyr_0351 0.72 -1.5
375,787 - Psyr_0351 0.72 -2.3
375,787 - Psyr_0351 0.72 +0.8
376,057 - -0.4
376,078 + +0.8
376,078 + -3.5
376,078 + -0.3
376,078 + -1.0
376,078 + -0.6
376,079 - -1.3
376,079 - +0.6
376,079 - +0.1
376,123 + -2.6
376,123 + +0.8
376,123 + -1.6
376,124 - +0.1
376,124 - +1.3
376,124 - -2.6
376,124 - -1.4
376,124 - +1.3
376,182 + -1.8
376,182 + +1.2
376,182 + -0.0
376,259 + -2.0
376,259 + -1.8
376,259 + -2.8
376,259 + +0.1
376,259 + -1.0
376,259 + +3.1
376,259 + -0.4
376,259 + -0.2
376,259 + +1.6
376,259 + -0.5
376,259 + -1.4
376,259 + -3.3
376,260 - -1.1
376,260 - +2.4
376,260 - +0.6
376,260 - -2.6
376,260 - -1.1
376,260 - +0.3
376,260 - -0.4
376,260 - +0.6
376,260 - +1.6
376,304 + -0.8
376,396 + -3.2
376,396 + -1.2
376,396 + -0.3
376,396 + +0.8
376,396 + -3.2
376,396 + -2.8
376,396 + +1.4
376,396 + +0.3
376,397 - -0.4
376,494 + -0.6
376,494 + +0.2
376,494 + +1.1
376,494 + +2.8
376,494 + -2.8
376,495 - +1.5
376,545 + Psyr_0352 0.11 +0.6
376,546 - Psyr_0352 0.11 -1.2
376,656 + Psyr_0352 0.19 -2.3
376,656 + Psyr_0352 0.19 -0.4
376,656 + Psyr_0352 0.19 +1.3
376,656 + Psyr_0352 0.19 +1.3
376,656 + Psyr_0352 0.19 -0.2
376,656 + Psyr_0352 0.19 -1.8
376,657 - Psyr_0352 0.20 -1.6
376,657 - Psyr_0352 0.20 -0.3
376,657 - Psyr_0352 0.20 -1.5
376,657 - Psyr_0352 0.20 +0.4
376,756 - Psyr_0352 0.27 -1.2
377,130 + Psyr_0352 0.54 -0.0
377,178 + Psyr_0352 0.58 -1.8
377,179 - Psyr_0352 0.58 +1.0
377,179 - Psyr_0352 0.58 -0.3
377,241 + Psyr_0352 0.63 +1.2
377,241 + Psyr_0352 0.63 -1.5
377,241 + Psyr_0352 0.63 -2.7
377,241 + Psyr_0352 0.63 -2.0
377,242 - Psyr_0352 0.63 +0.8
377,242 - Psyr_0352 0.63 +0.7
377,242 - Psyr_0352 0.63 +0.7
377,242 - Psyr_0352 0.63 +2.4
377,242 - Psyr_0352 0.63 -0.8
377,242 - Psyr_0352 0.63 -2.6
377,409 + Psyr_0352 0.75 -0.4
377,410 - Psyr_0352 0.75 -2.8
377,421 + Psyr_0352 0.76 +3.0
377,422 - Psyr_0352 0.76 -1.4
377,422 - Psyr_0352 0.76 +0.4
377,507 + Psyr_0352 0.82 -1.4
377,550 + Psyr_0352 0.85 +1.7
377,559 + Psyr_0352 0.86 -0.6
377,559 + Psyr_0352 0.86 -1.8
377,559 + Psyr_0352 0.86 -0.0
377,559 + Psyr_0352 0.86 -3.6
377,560 - Psyr_0352 0.86 -0.4
377,560 - Psyr_0352 0.86 +1.7
377,560 - Psyr_0352 0.86 -1.3
377,635 - -0.4
377,775 + +1.6
377,789 + -0.2
377,789 + +1.5
377,789 + +1.3
377,790 - -2.7
377,790 - +0.9
377,792 + +0.6
377,792 + -1.5
377,792 + +1.2
377,792 + -1.8
377,792 + -0.0
377,792 + -2.7
377,792 + +2.1
377,792 + +0.8
377,793 - -1.9
377,793 - +1.9
377,793 - -1.2
377,793 - -0.8
377,793 - +3.2
377,793 - -1.0
377,839 - +0.6
377,839 - -3.6
377,839 - -2.6
377,839 - -3.0
377,839 - -0.4
377,839 - +2.4
378,253 - Psyr_0353 0.42 +0.4
378,302 + Psyr_0353 0.46 +1.9
378,302 + Psyr_0353 0.46 -1.9
378,302 + Psyr_0353 0.46 -2.1
378,302 + Psyr_0353 0.46 +1.1
378,302 + Psyr_0353 0.46 -1.5
378,302 + Psyr_0353 0.46 -2.2
378,302 + Psyr_0353 0.46 +0.1
378,302 + Psyr_0353 0.46 -0.7
378,302 + Psyr_0353 0.46 -0.1
378,302 + Psyr_0353 0.46 +0.1
378,302 + Psyr_0353 0.46 +0.8
378,302 + Psyr_0353 0.46 -1.9
378,302 + Psyr_0353 0.46 -1.1
378,302 + Psyr_0353 0.46 -1.2
378,302 + Psyr_0353 0.46 +0.6
378,302 + Psyr_0353 0.46 +0.7
378,302 + Psyr_0353 0.46 -0.6
378,303 - Psyr_0353 0.46 +2.0
378,303 - Psyr_0353 0.46 +0.8
378,303 - Psyr_0353 0.46 +1.1
378,303 - Psyr_0353 0.46 -1.0
378,303 - Psyr_0353 0.46 -0.5
378,303 - Psyr_0353 0.46 +0.9
378,303 - Psyr_0353 0.46 +0.2
378,303 - Psyr_0353 0.46 +1.0
378,303 - Psyr_0353 0.46 -0.7
378,303 - Psyr_0353 0.46 +1.6
378,303 - Psyr_0353 0.46 -2.7
378,303 - Psyr_0353 0.46 +1.4
378,303 - Psyr_0353 0.46 -0.0
378,303 - Psyr_0353 0.46 +1.0
378,447 + Psyr_0353 0.58 -0.9
378,447 + Psyr_0353 0.58 +1.9
378,448 - Psyr_0353 0.58 -1.0
378,458 + Psyr_0353 0.59 -2.2
378,459 - Psyr_0353 0.59 -0.0
378,459 - Psyr_0353 0.59 -0.0
378,583 + Psyr_0353 0.69 -0.0
378,606 - Psyr_0353 0.71 +2.1

Or see this region's nucleotide sequence