Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0297

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0295 and Psyr_0296 overlap by 14 nucleotidesPsyr_0296 and Psyr_0297 overlap by 1 nucleotidesPsyr_0297 and Psyr_0298 are separated by 31 nucleotides Psyr_0295: Psyr_0295 - amino acid ABC transporter ATP-binding protein, PAAT family, at 315,811 to 316,545 _0295 Psyr_0296: Psyr_0296 - amino acid ABC transporter membrane protein 2, PAAT family, at 316,532 to 317,179 _0296 Psyr_0297: Psyr_0297 - amino acid ABC transporter membrane protein 1, PAAT family, at 317,179 to 317,844 _0297 Psyr_0298: Psyr_0298 - amino acid ABC transporter substrate-binding protein, PAAT family, at 317,876 to 318,661 _0298 Position (kb) 317 318Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 316.349 kb on + strand, within Psyr_0295at 316.349 kb on + strand, within Psyr_0295at 316.474 kb on + strandat 316.474 kb on + strandat 316.508 kb on + strandat 316.508 kb on + strandat 316.509 kb on - strandat 316.509 kb on - strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.511 kb on + strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.512 kb on - strandat 316.515 kb on + strandat 316.515 kb on + strandat 316.515 kb on + strandat 316.515 kb on + strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.516 kb on - strandat 316.587 kb on + strandat 316.588 kb on - strandat 316.602 kb on + strand, within Psyr_0296at 316.602 kb on + strand, within Psyr_0296at 316.623 kb on + strand, within Psyr_0296at 316.624 kb on - strand, within Psyr_0296at 316.624 kb on - strand, within Psyr_0296at 316.785 kb on + strand, within Psyr_0296at 316.786 kb on - strand, within Psyr_0296at 316.885 kb on - strand, within Psyr_0296at 316.885 kb on - strand, within Psyr_0296at 316.885 kb on - strand, within Psyr_0296at 316.895 kb on - strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.012 kb on + strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.013 kb on - strand, within Psyr_0296at 317.014 kb on + strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.015 kb on - strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.016 kb on + strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.017 kb on - strand, within Psyr_0296at 317.198 kb on + strandat 317.198 kb on + strandat 317.198 kb on + strandat 317.198 kb on + strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.199 kb on - strandat 317.252 kb on + strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.253 kb on - strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.273 kb on + strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.274 kb on - strand, within Psyr_0297at 317.535 kb on - strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.646 kb on + strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.647 kb on - strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.666 kb on + strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.667 kb on - strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.755 kb on + strand, within Psyr_0297at 317.756 kb on - strand, within Psyr_0297at 317.757 kb on + strand, within Psyr_0297at 317.933 kb on - strandat 318.009 kb on + strand, within Psyr_0298at 318.009 kb on + strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.010 kb on - strand, within Psyr_0298at 318.126 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.232 kb on + strand, within Psyr_0298at 318.233 kb on - strand, within Psyr_0298at 318.233 kb on - strand, within Psyr_0298at 318.297 kb on + strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.298 kb on - strand, within Psyr_0298at 318.309 kb on + strand, within Psyr_0298at 318.472 kb on + strand, within Psyr_0298at 318.635 kb on - strandat 318.635 kb on - strandat 318.661 kb on + strandat 318.661 kb on + strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.662 kb on - strandat 318.762 kb on + strandat 318.763 kb on - strandat 318.818 kb on + strandat 318.819 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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316,349 + Psyr_0295 0.73 -1.3
316,349 + Psyr_0295 0.73 +0.3
316,474 + +0.4
316,474 + -0.6
316,508 + -4.2
316,508 + -1.5
316,509 - +0.1
316,509 - +0.7
316,511 + +0.3
316,511 + -2.5
316,511 + -0.3
316,511 + -1.2
316,511 + +1.1
316,511 + +0.5
316,511 + +2.3
316,511 + -1.6
316,511 + +0.5
316,511 + -0.5
316,511 + -0.6
316,512 - +1.6
316,512 - +0.6
316,512 - -0.0
316,512 - +2.2
316,512 - +0.1
316,512 - +0.1
316,512 - +2.0
316,515 + +0.1
316,515 + -1.0
316,515 + -0.0
316,515 + +1.4
316,516 - -0.9
316,516 - -0.7
316,516 - -0.8
316,516 - +0.6
316,516 - -0.0
316,516 - -0.4
316,516 - -0.7
316,516 - -3.1
316,516 - -0.8
316,516 - +1.6
316,516 - -1.0
316,587 + -0.6
316,588 - +0.4
316,602 + Psyr_0296 0.11 +1.4
316,602 + Psyr_0296 0.11 +1.3
316,623 + Psyr_0296 0.14 +0.1
316,624 - Psyr_0296 0.14 -2.4
316,624 - Psyr_0296 0.14 -1.3
316,785 + Psyr_0296 0.39 +0.6
316,786 - Psyr_0296 0.39 +0.4
316,885 - Psyr_0296 0.54 +0.9
316,885 - Psyr_0296 0.54 +0.3
316,885 - Psyr_0296 0.54 -0.0
316,895 - Psyr_0296 0.56 +0.6
317,012 + Psyr_0296 0.74 +0.5
317,012 + Psyr_0296 0.74 +1.4
317,012 + Psyr_0296 0.74 -1.0
317,012 + Psyr_0296 0.74 -0.6
317,012 + Psyr_0296 0.74 +1.2
317,012 + Psyr_0296 0.74 +0.6
317,012 + Psyr_0296 0.74 +0.3
317,012 + Psyr_0296 0.74 -1.0
317,012 + Psyr_0296 0.74 -1.7
317,012 + Psyr_0296 0.74 -3.1
317,012 + Psyr_0296 0.74 -1.1
317,012 + Psyr_0296 0.74 +0.8
317,012 + Psyr_0296 0.74 +0.1
317,012 + Psyr_0296 0.74 -0.2
317,012 + Psyr_0296 0.74 -1.6
317,012 + Psyr_0296 0.74 +1.4
317,012 + Psyr_0296 0.74 +1.6
317,012 + Psyr_0296 0.74 +1.0
317,013 - Psyr_0296 0.74 -0.0
317,013 - Psyr_0296 0.74 +0.7
317,013 - Psyr_0296 0.74 +2.0
317,013 - Psyr_0296 0.74 -0.1
317,013 - Psyr_0296 0.74 -0.1
317,013 - Psyr_0296 0.74 +1.7
317,013 - Psyr_0296 0.74 +0.5
317,013 - Psyr_0296 0.74 -1.2
317,013 - Psyr_0296 0.74 +0.8
317,013 - Psyr_0296 0.74 +0.7
317,013 - Psyr_0296 0.74 +0.8
317,013 - Psyr_0296 0.74 +0.7
317,013 - Psyr_0296 0.74 -0.2
317,013 - Psyr_0296 0.74 +1.6
317,014 + Psyr_0296 0.74 +1.6
317,015 - Psyr_0296 0.75 -0.9
317,015 - Psyr_0296 0.75 +1.9
317,015 - Psyr_0296 0.75 +1.7
317,015 - Psyr_0296 0.75 +1.6
317,016 + Psyr_0296 0.75 +1.2
317,016 + Psyr_0296 0.75 -2.3
317,016 + Psyr_0296 0.75 -1.2
317,016 + Psyr_0296 0.75 -1.2
317,016 + Psyr_0296 0.75 +1.0
317,016 + Psyr_0296 0.75 -0.7
317,016 + Psyr_0296 0.75 -0.7
317,017 - Psyr_0296 0.75 +1.0
317,017 - Psyr_0296 0.75 -1.2
317,017 - Psyr_0296 0.75 +2.1
317,017 - Psyr_0296 0.75 +0.2
317,017 - Psyr_0296 0.75 -1.0
317,017 - Psyr_0296 0.75 -0.7
317,017 - Psyr_0296 0.75 +0.1
317,017 - Psyr_0296 0.75 +1.0
317,017 - Psyr_0296 0.75 -2.9
317,017 - Psyr_0296 0.75 +0.2
317,017 - Psyr_0296 0.75 -0.9
317,017 - Psyr_0296 0.75 +0.4
317,017 - Psyr_0296 0.75 -1.0
317,017 - Psyr_0296 0.75 +2.0
317,017 - Psyr_0296 0.75 -2.0
317,198 + -0.0
317,198 + +0.6
317,198 + -1.1
317,198 + -0.5
317,199 - -0.6
317,199 - -3.5
317,199 - -0.2
317,199 - +0.8
317,252 + Psyr_0297 0.11 -0.0
317,253 - Psyr_0297 0.11 +0.3
317,253 - Psyr_0297 0.11 +2.1
317,253 - Psyr_0297 0.11 -1.6
317,273 + Psyr_0297 0.14 +1.7
317,273 + Psyr_0297 0.14 -0.3
317,273 + Psyr_0297 0.14 -0.0
317,273 + Psyr_0297 0.14 +0.2
317,273 + Psyr_0297 0.14 -1.2
317,273 + Psyr_0297 0.14 +1.7
317,274 - Psyr_0297 0.14 +2.7
317,274 - Psyr_0297 0.14 -0.3
317,274 - Psyr_0297 0.14 +0.5
317,274 - Psyr_0297 0.14 -0.6
317,274 - Psyr_0297 0.14 -1.2
317,535 - Psyr_0297 0.53 -0.7
317,646 + Psyr_0297 0.70 -0.7
317,646 + Psyr_0297 0.70 +1.2
317,646 + Psyr_0297 0.70 +0.4
317,646 + Psyr_0297 0.70 -2.7
317,647 - Psyr_0297 0.70 -1.2
317,647 - Psyr_0297 0.70 -0.6
317,647 - Psyr_0297 0.70 +0.8
317,647 - Psyr_0297 0.70 -0.7
317,666 + Psyr_0297 0.73 +1.1
317,666 + Psyr_0297 0.73 +1.7
317,666 + Psyr_0297 0.73 -0.7
317,666 + Psyr_0297 0.73 +1.4
317,666 + Psyr_0297 0.73 +1.0
317,666 + Psyr_0297 0.73 +4.1
317,666 + Psyr_0297 0.73 +1.5
317,666 + Psyr_0297 0.73 +0.6
317,666 + Psyr_0297 0.73 -2.0
317,666 + Psyr_0297 0.73 -0.4
317,667 - Psyr_0297 0.73 +0.5
317,667 - Psyr_0297 0.73 -1.8
317,667 - Psyr_0297 0.73 -0.6
317,667 - Psyr_0297 0.73 -1.7
317,667 - Psyr_0297 0.73 +1.1
317,667 - Psyr_0297 0.73 -0.7
317,667 - Psyr_0297 0.73 -2.1
317,667 - Psyr_0297 0.73 +0.2
317,667 - Psyr_0297 0.73 -1.2
317,667 - Psyr_0297 0.73 -2.4
317,667 - Psyr_0297 0.73 +0.6
317,667 - Psyr_0297 0.73 -1.9
317,667 - Psyr_0297 0.73 -0.2
317,667 - Psyr_0297 0.73 -1.6
317,667 - Psyr_0297 0.73 -0.4
317,667 - Psyr_0297 0.73 +1.9
317,667 - Psyr_0297 0.73 +1.0
317,755 + Psyr_0297 0.86 +1.5
317,755 + Psyr_0297 0.86 +2.5
317,755 + Psyr_0297 0.86 +1.7
317,756 - Psyr_0297 0.87 +0.9
317,757 + Psyr_0297 0.87 -0.5
317,933 - -0.5
318,009 + Psyr_0298 0.17 +1.4
318,009 + Psyr_0298 0.17 -0.0
318,010 - Psyr_0298 0.17 +0.6
318,010 - Psyr_0298 0.17 -1.9
318,010 - Psyr_0298 0.17 +1.4
318,010 - Psyr_0298 0.17 +1.5
318,010 - Psyr_0298 0.17 -1.9
318,010 - Psyr_0298 0.17 -0.2
318,010 - Psyr_0298 0.17 +0.2
318,126 + Psyr_0298 0.32 +0.1
318,232 + Psyr_0298 0.45 +1.3
318,232 + Psyr_0298 0.45 -0.2
318,232 + Psyr_0298 0.45 +1.2
318,233 - Psyr_0298 0.45 +2.4
318,233 - Psyr_0298 0.45 -0.5
318,297 + Psyr_0298 0.54 +0.9
318,298 - Psyr_0298 0.54 -1.6
318,298 - Psyr_0298 0.54 +1.6
318,298 - Psyr_0298 0.54 -0.9
318,298 - Psyr_0298 0.54 +0.2
318,309 + Psyr_0298 0.55 +1.0
318,472 + Psyr_0298 0.76 -0.8
318,635 - -1.6
318,635 - +2.2
318,661 + -1.0
318,661 + +0.1
318,662 - +1.1
318,662 - -0.5
318,662 - +2.5
318,662 - -2.7
318,762 + -2.7
318,763 - +0.9
318,818 + -1.4
318,819 - +1.9

Or see this region's nucleotide sequence