Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0168 and Psyr_0169 are separated by 179 nucleotides Psyr_0169 and Psyr_0170 are separated by 177 nucleotides Psyr_0170 and Psyr_0171 are separated by 167 nucleotides
Psyr_0168: Psyr_0168 - Phosphoenolpyruvate carboxykinase (ATP), at 182,216 to 183,760
_0168
Psyr_0169: Psyr_0169 - Hsp33 protein, at 183,940 to 184,842
_0169
Psyr_0170: Psyr_0170 - heat shock protein Hsp15, at 185,020 to 185,427
_0170
Psyr_0171: Psyr_0171 - EAL, at 185,595 to 186,377
_0171
Position (kb) 183
184
185 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 182.989 kb on - strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.116 kb on + strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.117 kb on - strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.272 kb on + strand, within Psyr_0168 at 183.273 kb on - strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.366 kb on + strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.367 kb on - strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.464 kb on + strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.465 kb on - strand, within Psyr_0168 at 183.634 kb on + strand at 183.635 kb on - strand at 183.677 kb on + strand at 183.678 kb on - strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.735 kb on + strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.736 kb on - strand at 183.827 kb on - strand at 183.833 kb on + strand at 183.834 kb on - strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.898 kb on + strand at 183.899 kb on - strand at 183.899 kb on - strand at 184.017 kb on - strand at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.403 kb on + strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.404 kb on - strand, within Psyr_0169 at 184.751 kb on + strand, within Psyr_0169 at 184.752 kb on - strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.842 kb on + strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.843 kb on - strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.846 kb on + strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.847 kb on - strand at 184.855 kb on + strand at 184.855 kb on + strand at 184.856 kb on - strand at 184.864 kb on + strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.865 kb on - strand at 184.947 kb on + strand at 184.948 kb on - strand at 184.948 kb on - strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.954 kb on + strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 184.955 kb on - strand at 185.169 kb on - strand, within Psyr_0170 at 185.225 kb on - strand, within Psyr_0170 at 185.385 kb on + strand, within Psyr_0170 at 185.386 kb on - strand, within Psyr_0170 at 185.445 kb on - strand at 185.527 kb on - strand at 185.554 kb on + strand at 185.566 kb on + strand at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.682 kb on + strand, within Psyr_0171 at 185.683 kb on - strand, within Psyr_0171
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 182,989 - Psyr_0168 0.50 -3.9 183,116 + Psyr_0168 0.58 -2.4 183,116 + Psyr_0168 0.58 -1.0 183,117 - Psyr_0168 0.58 -0.7 183,117 - Psyr_0168 0.58 -0.5 183,117 - Psyr_0168 0.58 -1.7 183,117 - Psyr_0168 0.58 -2.3 183,272 + Psyr_0168 0.68 -2.6 183,272 + Psyr_0168 0.68 +2.1 183,273 - Psyr_0168 0.68 +0.1 183,366 + Psyr_0168 0.74 +0.3 183,366 + Psyr_0168 0.74 +0.8 183,366 + Psyr_0168 0.74 -1.4 183,366 + Psyr_0168 0.74 -2.2 183,366 + Psyr_0168 0.74 -2.6 183,366 + Psyr_0168 0.74 +2.7 183,366 + Psyr_0168 0.74 +2.1 183,367 - Psyr_0168 0.74 +0.0 183,367 - Psyr_0168 0.74 -0.6 183,367 - Psyr_0168 0.74 +0.8 183,367 - Psyr_0168 0.74 -0.7 183,464 + Psyr_0168 0.81 -1.7 183,464 + Psyr_0168 0.81 +0.8 183,464 + Psyr_0168 0.81 +0.0 183,464 + Psyr_0168 0.81 -0.1 183,465 - Psyr_0168 0.81 -1.4 183,465 - Psyr_0168 0.81 +0.9 183,465 - Psyr_0168 0.81 +2.2 183,465 - Psyr_0168 0.81 +0.1 183,465 - Psyr_0168 0.81 +1.9 183,634 + -1.3 183,635 - -2.2 183,677 + -2.3 183,678 - +0.4 183,735 + -0.8 183,735 + +1.4 183,735 + -1.1 183,735 + -0.9 183,736 - +0.6 183,736 - -1.6 183,736 - +0.9 183,736 - +1.4 183,827 - -0.3 183,833 + +2.3 183,834 - +0.9 183,898 + +0.4 183,898 + -0.8 183,898 + -1.0 183,899 - -0.5 183,899 - +0.1 184,017 - +1.1 184,403 + Psyr_0169 0.51 +0.7 184,403 + Psyr_0169 0.51 -1.0 184,403 + Psyr_0169 0.51 -3.2 184,403 + Psyr_0169 0.51 -0.1 184,404 - Psyr_0169 0.51 +2.1 184,404 - Psyr_0169 0.51 +1.5 184,404 - Psyr_0169 0.51 +1.6 184,404 - Psyr_0169 0.51 -2.0 184,751 + Psyr_0169 0.90 -0.3 184,752 - +0.2 184,842 + -0.8 184,842 + -2.3 184,842 + -1.8 184,842 + -1.5 184,842 + -2.1 184,842 + -1.8 184,842 + +0.5 184,842 + -0.4 184,842 + +3.1 184,842 + +0.8 184,842 + -2.4 184,843 - +1.0 184,843 - +0.5 184,843 - -3.8 184,843 - -3.2 184,843 - -2.2 184,843 - +1.0 184,843 - -0.2 184,843 - -0.2 184,843 - +1.1 184,843 - +0.3 184,843 - +0.6 184,843 - -1.9 184,843 - +0.4 184,843 - +0.6 184,843 - -1.6 184,843 - -3.1 184,843 - -0.2 184,843 - +0.6 184,843 - +0.6 184,843 - +0.0 184,843 - -1.2 184,843 - +1.5 184,846 + +0.1 184,846 + -1.9 184,846 + +1.5 184,847 - +0.2 184,847 - -2.5 184,847 - +0.0 184,847 - +0.3 184,855 + -2.2 184,855 + -2.1 184,856 - -0.4 184,864 + -0.4 184,865 - +1.5 184,865 - +2.0 184,865 - +1.5 184,865 - +0.3 184,947 + -1.9 184,948 - -1.8 184,948 - -0.3 184,954 + -2.2 184,954 + -0.7 184,954 + -1.0 184,954 + +1.4 184,955 - +1.5 184,955 - +2.7 184,955 - +0.8 184,955 - -3.8 184,955 - +2.4 185,169 - Psyr_0170 0.37 +0.7 185,225 - Psyr_0170 0.50 +1.3 185,385 + Psyr_0170 0.89 -0.3 185,386 - Psyr_0170 0.90 -2.1 185,445 - -0.6 185,527 - +0.9 185,554 + +4.2 185,566 + -1.2 185,682 + Psyr_0171 0.11 -0.2 185,682 + Psyr_0171 0.11 -1.4 185,682 + Psyr_0171 0.11 +0.6 185,683 - Psyr_0171 0.11 -1.0
Or see this region's nucleotide sequence