Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0111

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
121,364	+				+0.8
121,364	+				+1.7
121,365	-				-0.3
121,412	+				-3.1
121,412	+				+0.1
121,459	-				+0.1
121,505	+				+1.0
121,505	+				-1.0
121,505	+				-1.0
121,505	+				-0.1
121,505	+				-3.3
121,505	+				+1.7
121,505	+				-0.6
121,505	+				-3.9
121,505	+				+0.7
121,505	+				+2.4
121,505	+				-0.2
121,506	-				-1.0
121,506	-				-0.4
121,506	-				+1.0
121,506	-				+0.3
121,522	-				-2.6
121,550	+				-0.6
121,551	-				+0.2
121,551	-				-1.8
121,551	-				-1.0
121,551	-				-0.9
121,565	+				+0.0
121,571	+				-0.5
121,571	+				-2.2
121,571	+				-1.0
121,571	+				-0.4
121,571	+				+0.4
121,571	+				+1.5
121,571	+				+1.6
121,571	+				+1.5
121,571	+				-0.4
121,571	+				-0.1
121,571	+				-0.5
121,571	+				-0.5
121,571	+				+0.7
121,571	+				+1.5
121,571	+				-1.6
121,572	-				+0.7
121,572	-				+0.9
121,572	-				+0.6
121,572	-				-0.4
121,572	-				-1.3
121,572	-				-2.2
121,572	-				+1.1
121,572	-				+2.5
121,572	-				-0.1
121,572	-				+1.5
121,572	-				+0.2
121,572	-				+2.2
121,572	-				+0.5
121,572	-				-0.0
121,654	+		Psyr_0110	0.17	+0.8
121,655	-		Psyr_0110	0.17	-2.4
121,689	+		Psyr_0110	0.21	+0.6
121,792	-		Psyr_0110	0.33	-0.1
121,836	+		Psyr_0110	0.38	+1.3
121,836	+		Psyr_0110	0.38	-0.3
121,836	+		Psyr_0110	0.38	-2.6
121,836	+		Psyr_0110	0.38	+1.0
121,836	+		Psyr_0110	0.38	-2.2
121,837	-		Psyr_0110	0.38	-0.4
121,837	-		Psyr_0110	0.38	+1.1
121,865	+		Psyr_0110	0.42	-0.6
121,866	-		Psyr_0110	0.42	+0.5
121,866	-		Psyr_0110	0.42	-0.4
121,866	-		Psyr_0110	0.42	-2.9
121,866	-		Psyr_0110	0.42	+1.6
121,899	+		Psyr_0110	0.46	-1.3
121,915	+		Psyr_0110	0.48	+0.2
121,916	-		Psyr_0110	0.48	+1.6
121,916	-		Psyr_0110	0.48	-1.1
121,931	-		Psyr_0110	0.49	-1.4
121,931	-		Psyr_0110	0.49	+0.0
121,956	-		Psyr_0110	0.52	-1.0
121,967	+		Psyr_0110	0.54	+1.7
121,967	+		Psyr_0110	0.54	-0.9
121,967	+		Psyr_0110	0.54	+1.4
121,967	+		Psyr_0110	0.54	-0.6
121,967	+		Psyr_0110	0.54	-1.4
121,967	+		Psyr_0110	0.54	-0.3
121,967	+		Psyr_0110	0.54	-0.7
121,967	+		Psyr_0110	0.54	-1.2
121,967	+		Psyr_0110	0.54	+0.4
121,967	+		Psyr_0110	0.54	+2.3
121,967	+		Psyr_0110	0.54	+0.7
121,967	+		Psyr_0110	0.54	+1.0
121,968	-		Psyr_0110	0.54	+2.0
121,968	-		Psyr_0110	0.54	-0.6
121,968	-		Psyr_0110	0.54	-0.4
121,968	-		Psyr_0110	0.54	-0.8
121,968	-		Psyr_0110	0.54	+0.9
121,968	-		Psyr_0110	0.54	+0.5
121,968	-		Psyr_0110	0.54	+0.1
121,968	-		Psyr_0110	0.54	+1.7
121,968	-		Psyr_0110	0.54	+0.7
121,968	-		Psyr_0110	0.54	-1.9
121,968	-		Psyr_0110	0.54	+0.3
121,968	-		Psyr_0110	0.54	-2.2
122,012	+		Psyr_0110	0.59	-2.5
122,013	-		Psyr_0110	0.59	-3.4
122,141	+		Psyr_0110	0.74	-0.4
122,141	+		Psyr_0110	0.74	-2.6
122,141	+		Psyr_0110	0.74	-1.2
122,141	+		Psyr_0110	0.74	+1.2
122,141	+		Psyr_0110	0.74	-1.0
122,141	+		Psyr_0110	0.74	+0.4
122,141	+		Psyr_0110	0.74	-1.6
122,142	-		Psyr_0110	0.74	+3.6
122,142	-		Psyr_0110	0.74	+2.0
122,142	-		Psyr_0110	0.74	-2.5
122,146	+		Psyr_0110	0.75	+0.0
122,146	+		Psyr_0110	0.75	-2.2
122,146	+		Psyr_0110	0.75	+1.3
122,146	+		Psyr_0110	0.75	-1.0
122,147	-		Psyr_0110	0.75	+2.0
122,147	-		Psyr_0110	0.75	-0.2
122,147	-		Psyr_0110	0.75	-1.9
122,147	-		Psyr_0110	0.75	-2.3
122,147	-		Psyr_0110	0.75	-2.1
122,147	-		Psyr_0110	0.75	+2.0
122,147	-		Psyr_0110	0.75	-1.7
122,184	-		Psyr_0110	0.79	+1.0
122,184	-		Psyr_0110	0.79	+2.3
122,184	-		Psyr_0110	0.79	-0.9
122,187	+		Psyr_0110	0.79	+2.0
122,187	+		Psyr_0110	0.79	-1.9
122,188	-		Psyr_0110	0.80	+2.4
122,265	+		Psyr_0110	0.89	-0.3
122,315	+				-2.0
122,315	+				-0.4
122,315	+				+1.0
122,338	-				+0.4
122,367	+				-1.4
122,367	+				-2.0
122,367	+				-1.4
122,367	+				-2.0
122,367	+				-2.5
122,367	+				-1.6
122,367	+				-3.2
122,367	+				+0.1
122,367	+				-1.1
122,367	+				+0.0
122,367	+				-1.1
122,367	+				-0.9
122,367	+				-1.7
122,367	+				+0.3
122,367	+				+1.2
122,367	+				-3.0
122,367	+				-0.7
122,367	+				-1.7
122,368	-				+0.9
122,368	-				-2.0
122,368	-				-1.0
122,368	-				+1.1
122,368	-				-1.6
122,368	-				-0.9
122,368	-				+0.6
122,368	-				-0.1
122,368	-				+0.1
122,368	-				+2.3
122,368	-				-1.9
122,409	-		Psyr_0111	0.11	+1.2
122,409	-		Psyr_0111	0.11	+2.2
122,442	-		Psyr_0111	0.19	-1.7
122,447	+		Psyr_0111	0.20	-0.9
122,448	-		Psyr_0111	0.20	-0.8
122,448	-		Psyr_0111	0.20	-1.0
122,448	-		Psyr_0111	0.20	+0.8
122,517	-		Psyr_0111	0.36	-2.6
122,533	+		Psyr_0111	0.40	-1.3
122,558	+		Psyr_0111	0.45	-2.5
122,558	+		Psyr_0111	0.45	-0.4
122,558	+		Psyr_0111	0.45	-2.3
122,559	-		Psyr_0111	0.46	+1.5
122,559	-		Psyr_0111	0.46	+0.1
122,588	+		Psyr_0111	0.52	-1.4
122,589	-		Psyr_0111	0.53	-0.9
122,589	-		Psyr_0111	0.53	+0.5
122,589	-		Psyr_0111	0.53	-2.3
122,608	-		Psyr_0111	0.57	-2.4
122,617	+		Psyr_0111	0.59	-0.0
122,617	+		Psyr_0111	0.59	-2.6
122,617	+		Psyr_0111	0.59	-3.0
122,617	+		Psyr_0111	0.59	-1.0
122,618	-		Psyr_0111	0.59	-1.1
122,697	+		Psyr_0111	0.78	+0.2
122,698	-		Psyr_0111	0.78	-2.4
122,732	+		Psyr_0111	0.86	-0.7
122,733	-		Psyr_0111	0.86	+1.9
122,733	-		Psyr_0111	0.86	+0.4
122,735	+		Psyr_0111	0.86	-1.6
122,822	-				-2.5
122,838	-				+1.7
122,898	+		Psyr_0112	0.23	-0.7
122,899	-		Psyr_0112	0.23	-2.5
122,954	+		Psyr_0112	0.38	-1.3
122,954	+		Psyr_0112	0.38	+1.1
122,998	-		Psyr_0112	0.49	-1.9
122,998	-		Psyr_0112	0.49	+0.2
123,045	-		Psyr_0112	0.61	-0.6
123,045	-		Psyr_0112	0.61	-1.7
123,045	-		Psyr_0112	0.61	+4.2
123,045	-		Psyr_0112	0.61	-1.1
123,054	-		Psyr_0112	0.64	-0.0
123,068	+		Psyr_0112	0.67	+0.3
123,068	+		Psyr_0112	0.67	+0.7
123,068	+		Psyr_0112	0.67	-2.8
123,068	+		Psyr_0112	0.67	-1.9
123,069	-		Psyr_0112	0.67	-1.0
123,149	-		Psyr_0112	0.88	-1.3
123,149	-		Psyr_0112	0.88	+0.0
123,193	+				-2.7
123,193	+				+2.7
123,193	+				+1.8
123,193	+				+0.5
123,193	+				-0.9
123,193	+				+0.6
123,193	+				-2.0
123,193	+				-2.9
123,194	-				-0.0
123,194	-				+1.0
123,194	-				-0.2
123,201	+				+0.5
123,201	+				-1.7
123,201	+				-0.5
123,202	-				+0.6
123,202	-				-2.2
123,202	-				+0.3
123,220	+				-0.0
123,220	+				+0.9
123,220	+				+2.4
123,220	+				-0.8
123,221	-				+1.1
123,221	-				-0.6
123,221	-				-0.3
123,221	-				-1.1
123,233	+				+2.5
123,233	+				+0.7
123,234	-				-2.3
123,234	-				+3.0
123,234	-				+1.0
123,234	-				-1.4
123,254	+				+0.6
123,254	+				-1.2
123,255	-				+0.8
123,255	-				-3.6
123,255	-				+0.0
123,255	-				-2.5
123,255	-				+1.3
123,283	-				+0.9
123,283	-				+0.4
123,343	+				+3.4
123,343	+				+1.7
123,343	+				-0.7
123,344	-				-2.2
123,344	-				-1.8
123,344	-				-1.2
123,344	-				-1.0
123,375	+				-1.3
123,396	-				-1.6
123,415	-				-0.9
123,415	-				-0.6
123,513	+				+0.4
123,536	-				-0.7
123,617	-				-0.4
123,650	+				-1.9
123,650	+				-2.6
123,650	+				+0.0
123,650	+				+0.2
123,651	-				-2.0
123,651	-				+0.0
123,730	+				+3.5
123,731	-				-0.5