Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0030

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
33,455	+		Psyr_0029	0.48	+2.4
33,455	+		Psyr_0029	0.48	-0.2
33,455	+		Psyr_0029	0.48	-0.3
33,455	+		Psyr_0029	0.48	+1.0
33,455	+		Psyr_0029	0.48	-0.7
33,455	+		Psyr_0029	0.48	+1.2
33,456	-		Psyr_0029	0.48	-2.9
33,456	-		Psyr_0029	0.48	+0.0
33,456	-		Psyr_0029	0.48	-0.4
33,456	-		Psyr_0029	0.48	+1.7
33,456	-		Psyr_0029	0.48	+0.4
33,456	-		Psyr_0029	0.48	+0.2
33,456	-		Psyr_0029	0.48	+0.2
33,456	-		Psyr_0029	0.48	+1.9
33,456	-		Psyr_0029	0.48	-0.1
33,473	+		Psyr_0029	0.49	+1.9
33,473	+		Psyr_0029	0.49	-1.4
33,474	-		Psyr_0029	0.49	+1.0
33,530	+		Psyr_0029	0.53	+1.1
33,530	+		Psyr_0029	0.53	-0.0
33,530	+		Psyr_0029	0.53	-1.2
33,530	+		Psyr_0029	0.53	-2.6
33,531	-		Psyr_0029	0.53	-0.8
33,531	-		Psyr_0029	0.53	+0.3
33,531	-		Psyr_0029	0.53	+0.8
33,531	-		Psyr_0029	0.53	+0.6
33,598	+		Psyr_0029	0.58	+0.7
33,598	+		Psyr_0029	0.58	+1.7
33,599	-		Psyr_0029	0.58	+0.7
33,599	-		Psyr_0029	0.58	-2.3
33,614	+		Psyr_0029	0.59	-1.4
33,644	+		Psyr_0029	0.61	+1.5
33,644	+		Psyr_0029	0.61	+2.2
33,645	-		Psyr_0029	0.61	-0.4
33,716	+		Psyr_0029	0.65	+1.1
33,716	+		Psyr_0029	0.65	+1.5
33,717	-		Psyr_0029	0.65	-1.0
33,722	+		Psyr_0029	0.66	-0.6
33,722	+		Psyr_0029	0.66	-2.0
33,722	+		Psyr_0029	0.66	-0.8
33,723	-		Psyr_0029	0.66	-1.9
33,723	-		Psyr_0029	0.66	+0.8
33,816	-		Psyr_0029	0.72	-2.0
33,864	-		Psyr_0029	0.75	-0.2
33,960	-		Psyr_0029	0.82	+1.3
33,986	+		Psyr_0029	0.83	+0.2
33,986	+		Psyr_0029	0.83	-2.8
33,986	+		Psyr_0029	0.83	+0.4
33,986	+		Psyr_0029	0.83	-1.6
33,986	+		Psyr_0029	0.83	+0.3
33,987	-		Psyr_0029	0.83	+0.3
34,117	+				+2.0
34,117	+				-1.6
34,118	-				-1.8
34,118	-				+0.8
34,238	+				+0.4
34,238	+				-1.1
34,238	+				+2.6
34,239	-				+0.6
34,239	-				-1.6
34,239	-				-1.8
34,245	+				+2.2
34,246	-				+0.5
34,246	-				-1.1
34,298	+				-1.4
34,319	+				-1.2
34,320	-				-2.0
34,334	-				-0.2
34,414	+				-0.7
34,524	+		Psyr_0030	0.18	+0.8
34,524	+		Psyr_0030	0.18	-0.9
34,525	-		Psyr_0030	0.18	-0.2
34,532	+		Psyr_0030	0.19	+0.6
34,609	+		Psyr_0030	0.27	+0.9
34,978	+		Psyr_0030	0.66	-1.4
34,978	+		Psyr_0030	0.66	+0.0
34,978	+		Psyr_0030	0.66	-0.6
34,978	+		Psyr_0030	0.66	-0.7
34,978	+		Psyr_0030	0.66	+3.3
34,978	+		Psyr_0030	0.66	+1.3
34,978	+		Psyr_0030	0.66	-1.2
34,979	-		Psyr_0030	0.66	-0.2
35,037	+		Psyr_0030	0.72	+2.6
35,037	+		Psyr_0030	0.72	-2.2
35,037	+		Psyr_0030	0.72	+1.2
35,037	+		Psyr_0030	0.72	-1.4
35,037	+		Psyr_0030	0.72	+1.1
35,037	+		Psyr_0030	0.72	+0.5
35,038	-		Psyr_0030	0.72	+0.0
35,038	-		Psyr_0030	0.72	-2.3
35,038	-		Psyr_0030	0.72	+0.2
35,038	-		Psyr_0030	0.72	-0.7
35,038	-		Psyr_0030	0.72	-0.7
35,169	+		Psyr_0030	0.86	-0.8
35,169	+		Psyr_0030	0.86	-1.0
35,172	+		Psyr_0030	0.86	-0.5
35,172	+		Psyr_0030	0.86	-2.0
35,172	+		Psyr_0030	0.86	-1.4
35,172	+		Psyr_0030	0.86	-1.2
35,172	+		Psyr_0030	0.86	+1.1
35,172	+		Psyr_0030	0.86	+1.6
35,172	+		Psyr_0030	0.86	+1.1
35,172	+		Psyr_0030	0.86	+0.5
35,173	-		Psyr_0030	0.87	+0.3
35,173	-		Psyr_0030	0.87	+1.4
35,173	-		Psyr_0030	0.87	+0.7
35,173	-		Psyr_0030	0.87	-1.9
35,173	-		Psyr_0030	0.87	+0.6
35,173	-		Psyr_0030	0.87	-1.5
35,298	+				+1.0
35,298	+				+0.4
35,298	+				-0.4
35,298	+				+0.9
35,298	+				+1.1
35,298	+				-0.6
35,298	+				+1.3
35,299	-				-1.2
35,299	-				+0.6
35,299	-				-2.2
35,299	-				-1.0
35,299	-				+1.4
35,299	-				+1.2
35,299	-				+1.3
35,299	-				-1.7
35,299	-				+2.3
35,301	+				+0.2
35,302	-				-3.0
35,302	-				-1.5
35,302	-				+0.2
35,302	-				-0.4
35,302	-				-0.2
35,302	-				-0.2
35,365	+				+0.7
35,365	+				+1.5
35,365	+				-2.1
35,366	-				+1.4
35,366	-				-0.0
35,366	-				+0.1
35,368	-				+0.0
35,429	+				-0.6
35,429	+				+0.8
35,429	+				-1.4
35,430	-				-0.9
35,430	-				-1.7
35,455	+				+0.4
35,455	+				+0.8
35,455	+				-2.1
35,456	-				+0.2
35,456	-				-0.4
35,456	-				+2.0
35,456	-				-0.5
35,456	-				-1.6
35,481	+				+1.5
35,481	+				-2.2
35,482	-				-0.4
35,482	-				-0.2
35,509	+				-0.1
35,509	+				+0.8
35,509	+				+0.4
35,526	+				-0.8
35,526	+				-0.9
35,526	+				+1.7
35,526	+				-0.4
35,526	+				-0.2
35,526	+				+0.0
35,526	+				+0.0
35,527	-				+1.7
35,527	-				+0.4
35,527	-				-1.6
35,527	-				-0.4
35,564	+		Psyr_0031	0.14	+1.7
35,564	+		Psyr_0031	0.14	-0.0
35,716	+		Psyr_0031	0.33	-3.8
35,716	+		Psyr_0031	0.33	-1.7
35,717	-		Psyr_0031	0.33	+1.9
35,802	+		Psyr_0031	0.43	-0.8
35,802	+		Psyr_0031	0.43	+2.0
35,803	-		Psyr_0031	0.43	-0.1
35,803	-		Psyr_0031	0.43	+0.0
35,803	-		Psyr_0031	0.43	+0.4
35,835	+		Psyr_0031	0.47	+1.5
35,835	+		Psyr_0031	0.47	-3.3
35,838	+		Psyr_0031	0.48	-0.8
35,838	+		Psyr_0031	0.48	-1.1
35,838	+		Psyr_0031	0.48	+0.4
35,838	+		Psyr_0031	0.48	+2.2
35,838	+		Psyr_0031	0.48	+0.2
35,838	+		Psyr_0031	0.48	-0.9
35,838	+		Psyr_0031	0.48	+2.2
35,838	+		Psyr_0031	0.48	-0.8
35,839	-		Psyr_0031	0.48	+2.0
35,839	-		Psyr_0031	0.48	-1.7
35,839	-		Psyr_0031	0.48	+1.3
35,839	-		Psyr_0031	0.48	+2.5
35,839	-		Psyr_0031	0.48	-0.0
35,839	-		Psyr_0031	0.48	-2.5
35,927	+		Psyr_0031	0.58	-1.6
35,949	+		Psyr_0031	0.61	-1.8
35,950	-		Psyr_0031	0.61	-2.8
35,950	-		Psyr_0031	0.61	+0.8
35,950	-		Psyr_0031	0.61	-0.9
35,950	-		Psyr_0031	0.61	-0.4
35,950	-		Psyr_0031	0.61	+0.7
36,162	+		Psyr_0031	0.87	-0.4
36,162	+		Psyr_0031	0.87	+0.1
36,162	+		Psyr_0031	0.87	+0.5
36,163	-		Psyr_0031	0.87	+1.4
36,163	-		Psyr_0031	0.87	-0.4
36,163	-		Psyr_0031	0.87	+1.5