Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_3790

Experiment: sodium fluoride 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_3790 and Pf6N2E2_3791 are separated by 201 nucleotides Pf6N2E2_3790 - hypothetical protein, at 4,414,474 to 4,414,815 _3790 Pf6N2E2_3791 - Glucans biosynthesis glucosyltransferase H (EC 2.4.1.-), at 4,415,017 to 4,417,530 _3791 Position (kb) 4414 4415Strain fitness (log2 ratio) -2 -1 0 1 2at 4413.519 kb on - strandat 4413.519 kb on - strandat 4413.569 kb on + strandat 4413.670 kb on + strandat 4413.670 kb on + strandat 4413.671 kb on - strandat 4413.713 kb on - strandat 4413.721 kb on + strandat 4413.721 kb on + strandat 4413.775 kb on - strandat 4413.791 kb on + strandat 4413.792 kb on - strandat 4414.082 kb on + strandat 4414.082 kb on + strandat 4414.083 kb on - strandat 4414.083 kb on - strandat 4414.110 kb on - strandat 4414.123 kb on + strandat 4414.138 kb on + strandat 4414.138 kb on + strandat 4414.139 kb on - strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.151 kb on + strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.152 kb on - strandat 4414.155 kb on + strandat 4414.155 kb on + strandat 4414.155 kb on + strandat 4414.156 kb on - strandat 4414.156 kb on - strandat 4414.156 kb on - strandat 4414.156 kb on - strandat 4414.156 kb on - strandat 4414.217 kb on + strandat 4414.217 kb on + strandat 4414.217 kb on + strandat 4414.217 kb on + strandat 4414.217 kb on + strandat 4414.217 kb on + strandat 4414.218 kb on - strandat 4414.218 kb on - strandat 4414.218 kb on - strandat 4414.223 kb on + strandat 4414.223 kb on + strandat 4414.224 kb on - strandat 4414.266 kb on - strandat 4414.319 kb on + strandat 4414.320 kb on - strandat 4414.431 kb on - strandat 4414.431 kb on - strandat 4414.555 kb on + strand, within Pf6N2E2_3790at 4414.556 kb on - strand, within Pf6N2E2_3790at 4414.556 kb on - strand, within Pf6N2E2_3790at 4414.558 kb on + strand, within Pf6N2E2_3790at 4414.558 kb on + strand, within Pf6N2E2_3790at 4414.743 kb on + strand, within Pf6N2E2_3790at 4414.743 kb on + strand, within Pf6N2E2_3790at 4414.744 kb on - strand, within Pf6N2E2_3790at 4414.744 kb on - strand, within Pf6N2E2_3790at 4414.744 kb on - strand, within Pf6N2E2_3790at 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.805 kb on + strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.806 kb on - strandat 4414.929 kb on + strandat 4415.295 kb on - strand, within Pf6N2E2_3791at 4415.375 kb on + strand, within Pf6N2E2_3791at 4415.375 kb on + strand, within Pf6N2E2_3791at 4415.375 kb on + strand, within Pf6N2E2_3791at 4415.375 kb on + strand, within Pf6N2E2_3791at 4415.375 kb on + strand, within Pf6N2E2_3791at 4415.376 kb on - strand, within Pf6N2E2_3791at 4415.376 kb on - strand, within Pf6N2E2_3791at 4415.412 kb on - strand, within Pf6N2E2_3791at 4415.412 kb on - strand, within Pf6N2E2_3791

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 15 mM
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4,413,519 - +0.1
4,413,519 - -1.8
4,413,569 + +0.3
4,413,670 + +0.7
4,413,670 + +0.5
4,413,671 - -0.8
4,413,713 - +0.2
4,413,721 + -0.2
4,413,721 + -0.7
4,413,775 - -0.0
4,413,791 + +0.2
4,413,792 - +1.0
4,414,082 + +0.9
4,414,082 + -0.5
4,414,083 - +0.5
4,414,083 - +0.8
4,414,110 - -0.1
4,414,123 + +0.4
4,414,138 + +0.8
4,414,138 + +0.2
4,414,139 - +0.6
4,414,151 + +0.1
4,414,151 + +0.3
4,414,151 + -0.2
4,414,151 + -0.2
4,414,151 + -0.1
4,414,151 + +1.1
4,414,151 + -0.4
4,414,151 + +0.5
4,414,152 - +0.3
4,414,152 - +0.6
4,414,152 - +0.3
4,414,152 - -0.3
4,414,152 - +0.1
4,414,152 - -0.7
4,414,152 - +0.9
4,414,152 - +0.2
4,414,155 + -0.2
4,414,155 + -0.7
4,414,155 + -0.4
4,414,156 - +1.4
4,414,156 - -0.0
4,414,156 - -0.3
4,414,156 - -1.0
4,414,156 - +0.8
4,414,217 + -0.8
4,414,217 + +0.7
4,414,217 + +0.6
4,414,217 + +0.3
4,414,217 + +0.5
4,414,217 + -0.2
4,414,218 - -0.5
4,414,218 - -0.2
4,414,218 - +1.0
4,414,223 + +0.3
4,414,223 + -1.2
4,414,224 - -0.0
4,414,266 - +1.2
4,414,319 + -1.7
4,414,320 - +1.1
4,414,431 - +0.5
4,414,431 - +1.0
4,414,555 + Pf6N2E2_3790 0.24 -1.8
4,414,556 - Pf6N2E2_3790 0.24 -0.2
4,414,556 - Pf6N2E2_3790 0.24 -1.2
4,414,558 + Pf6N2E2_3790 0.25 +0.3
4,414,558 + Pf6N2E2_3790 0.25 -1.0
4,414,743 + Pf6N2E2_3790 0.79 -0.2
4,414,743 + Pf6N2E2_3790 0.79 -0.5
4,414,744 - Pf6N2E2_3790 0.79 -0.7
4,414,744 - Pf6N2E2_3790 0.79 -2.4
4,414,744 - Pf6N2E2_3790 0.79 -0.2
4,414,805 + -0.4
4,414,805 + +0.3
4,414,805 + +0.2
4,414,805 + -0.0
4,414,805 + -0.6
4,414,805 + -0.8
4,414,805 + +1.5
4,414,805 + -1.1
4,414,806 - +0.3
4,414,806 - +0.6
4,414,806 - +0.1
4,414,806 - +0.2
4,414,806 - -0.5
4,414,806 - -0.3
4,414,806 - -1.2
4,414,806 - +1.2
4,414,806 - -0.7
4,414,806 - -0.6
4,414,806 - -0.0
4,414,806 - -0.0
4,414,806 - -1.0
4,414,806 - +1.0
4,414,929 + +0.3
4,415,295 - Pf6N2E2_3791 0.11 +2.2
4,415,375 + Pf6N2E2_3791 0.14 +2.0
4,415,375 + Pf6N2E2_3791 0.14 +1.7
4,415,375 + Pf6N2E2_3791 0.14 +0.5
4,415,375 + Pf6N2E2_3791 0.14 +2.4
4,415,375 + Pf6N2E2_3791 0.14 +2.0
4,415,376 - Pf6N2E2_3791 0.14 +1.9
4,415,376 - Pf6N2E2_3791 0.14 +2.6
4,415,412 - Pf6N2E2_3791 0.16 +1.5
4,415,412 - Pf6N2E2_3791 0.16 +1.9

Or see this region's nucleotide sequence