Experiment: sodium fluoride 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_2764 and Pf6N2E2_2765 overlap by 8 nucleotides Pf6N2E2_2765 and Pf6N2E2_2766 overlap by 27 nucleotides Pf6N2E2_2766 and Pf6N2E2_2767 are separated by 186 nucleotides Pf6N2E2_2767 and Pf6N2E2_2768 are separated by 24 nucleotides
Pf6N2E2_2764 - Tricarboxylate transport sensor protein TctE, at 3,253,731 to 3,255,122
_2764
Pf6N2E2_2765 - Tricarboxylate transport transcriptional regulator TctD, at 3,255,115 to 3,255,786
_2765
Pf6N2E2_2766 - hypothetical protein, at 3,255,760 to 3,255,888
_2766
Pf6N2E2_2767 - hypothetical protein, at 3,256,075 to 3,256,188
_2767
Pf6N2E2_2768 - Tricarboxylate transport protein TctC, at 3,256,213 to 3,257,205
_2768
Position (kb)
3255
3256 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3254.255 kb on + strand, within Pf6N2E2_2764 at 3254.255 kb on + strand, within Pf6N2E2_2764 at 3254.256 kb on - strand, within Pf6N2E2_2764 at 3254.256 kb on - strand, within Pf6N2E2_2764 at 3254.256 kb on - strand, within Pf6N2E2_2764 at 3254.758 kb on + strand, within Pf6N2E2_2764 at 3254.759 kb on - strand, within Pf6N2E2_2764 at 3254.759 kb on - strand, within Pf6N2E2_2764 at 3254.866 kb on + strand, within Pf6N2E2_2764 at 3254.869 kb on + strand, within Pf6N2E2_2764 at 3254.869 kb on + strand, within Pf6N2E2_2764 at 3254.869 kb on + strand, within Pf6N2E2_2764 at 3254.869 kb on + strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.870 kb on - strand, within Pf6N2E2_2764 at 3254.891 kb on - strand, within Pf6N2E2_2764 at 3254.900 kb on + strand, within Pf6N2E2_2764 at 3254.900 kb on + strand, within Pf6N2E2_2764 at 3254.900 kb on + strand, within Pf6N2E2_2764 at 3254.914 kb on + strand, within Pf6N2E2_2764 at 3254.914 kb on + strand, within Pf6N2E2_2764 at 3254.915 kb on - strand, within Pf6N2E2_2764 at 3254.998 kb on + strand at 3255.060 kb on + strand at 3255.060 kb on + strand at 3255.116 kb on + strand at 3255.116 kb on + strand at 3255.116 kb on + strand at 3255.116 kb on + strand at 3255.117 kb on - strand at 3255.209 kb on + strand, within Pf6N2E2_2765 at 3255.209 kb on + strand, within Pf6N2E2_2765 at 3255.209 kb on + strand, within Pf6N2E2_2765 at 3255.210 kb on - strand, within Pf6N2E2_2765 at 3255.210 kb on - strand, within Pf6N2E2_2765 at 3255.387 kb on - strand, within Pf6N2E2_2765 at 3255.387 kb on - strand, within Pf6N2E2_2765 at 3255.494 kb on + strand, within Pf6N2E2_2765 at 3255.495 kb on - strand, within Pf6N2E2_2765 at 3255.924 kb on + strand at 3255.931 kb on - strand at 3255.998 kb on + strand at 3255.998 kb on + strand at 3255.999 kb on - strand at 3255.999 kb on - strand at 3255.999 kb on - strand at 3255.999 kb on - strand at 3256.008 kb on - strand at 3256.019 kb on - strand at 3256.043 kb on - strand at 3256.043 kb on - strand at 3256.188 kb on + strand at 3256.231 kb on - strand at 3256.231 kb on - strand at 3256.231 kb on - strand at 3256.235 kb on + strand at 3256.236 kb on - strand at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.420 kb on + strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.421 kb on - strand, within Pf6N2E2_2768 at 3256.450 kb on + strand, within Pf6N2E2_2768 at 3256.450 kb on + strand, within Pf6N2E2_2768 at 3256.450 kb on + strand, within Pf6N2E2_2768 at 3256.594 kb on + strand, within Pf6N2E2_2768 at 3256.595 kb on - strand, within Pf6N2E2_2768 at 3256.595 kb on - strand, within Pf6N2E2_2768 at 3256.649 kb on + strand, within Pf6N2E2_2768 at 3256.649 kb on + strand, within Pf6N2E2_2768 at 3256.775 kb on - strand, within Pf6N2E2_2768 at 3256.775 kb on - strand, within Pf6N2E2_2768 at 3256.775 kb on - strand, within Pf6N2E2_2768
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 15 mM remove 3,254,255 + Pf6N2E2_2764 0.38 +0.4 3,254,255 + Pf6N2E2_2764 0.38 +0.5 3,254,256 - Pf6N2E2_2764 0.38 +0.9 3,254,256 - Pf6N2E2_2764 0.38 +0.1 3,254,256 - Pf6N2E2_2764 0.38 +0.1 3,254,758 + Pf6N2E2_2764 0.74 -0.2 3,254,759 - Pf6N2E2_2764 0.74 -0.1 3,254,759 - Pf6N2E2_2764 0.74 +0.2 3,254,866 + Pf6N2E2_2764 0.82 +0.9 3,254,869 + Pf6N2E2_2764 0.82 +0.8 3,254,869 + Pf6N2E2_2764 0.82 +0.2 3,254,869 + Pf6N2E2_2764 0.82 +0.2 3,254,869 + Pf6N2E2_2764 0.82 -2.0 3,254,870 - Pf6N2E2_2764 0.82 +0.2 3,254,870 - Pf6N2E2_2764 0.82 -0.2 3,254,870 - Pf6N2E2_2764 0.82 -0.2 3,254,870 - Pf6N2E2_2764 0.82 -0.6 3,254,870 - Pf6N2E2_2764 0.82 -0.1 3,254,870 - Pf6N2E2_2764 0.82 +0.5 3,254,891 - Pf6N2E2_2764 0.83 -0.6 3,254,900 + Pf6N2E2_2764 0.84 -0.5 3,254,900 + Pf6N2E2_2764 0.84 -0.3 3,254,900 + Pf6N2E2_2764 0.84 +0.7 3,254,914 + Pf6N2E2_2764 0.85 -0.3 3,254,914 + Pf6N2E2_2764 0.85 +1.5 3,254,915 - Pf6N2E2_2764 0.85 +0.8 3,254,998 + +0.9 3,255,060 + -0.3 3,255,060 + +0.2 3,255,116 + +0.4 3,255,116 + -0.1 3,255,116 + +2.4 3,255,116 + -0.5 3,255,117 - -0.8 3,255,209 + Pf6N2E2_2765 0.14 -0.6 3,255,209 + Pf6N2E2_2765 0.14 -0.3 3,255,209 + Pf6N2E2_2765 0.14 +0.4 3,255,210 - Pf6N2E2_2765 0.14 +0.7 3,255,210 - Pf6N2E2_2765 0.14 +0.1 3,255,387 - Pf6N2E2_2765 0.40 -0.2 3,255,387 - Pf6N2E2_2765 0.40 -1.1 3,255,494 + Pf6N2E2_2765 0.56 -1.4 3,255,495 - Pf6N2E2_2765 0.57 -0.6 3,255,924 + +0.8 3,255,931 - +0.3 3,255,998 + +0.1 3,255,998 + +0.3 3,255,999 - -0.3 3,255,999 - -0.6 3,255,999 - -0.9 3,255,999 - -1.2 3,256,008 - -0.6 3,256,019 - -0.8 3,256,043 - -0.1 3,256,043 - +0.9 3,256,188 + -0.5 3,256,231 - +0.8 3,256,231 - +0.3 3,256,231 - -0.9 3,256,235 + +0.5 3,256,236 - -1.2 3,256,420 + Pf6N2E2_2768 0.21 +0.6 3,256,420 + Pf6N2E2_2768 0.21 +0.1 3,256,420 + Pf6N2E2_2768 0.21 +0.8 3,256,420 + Pf6N2E2_2768 0.21 +0.1 3,256,420 + Pf6N2E2_2768 0.21 -0.6 3,256,420 + Pf6N2E2_2768 0.21 +0.7 3,256,421 - Pf6N2E2_2768 0.21 -0.0 3,256,421 - Pf6N2E2_2768 0.21 -0.2 3,256,421 - Pf6N2E2_2768 0.21 -0.8 3,256,421 - Pf6N2E2_2768 0.21 -1.2 3,256,421 - Pf6N2E2_2768 0.21 -0.6 3,256,421 - Pf6N2E2_2768 0.21 -0.3 3,256,421 - Pf6N2E2_2768 0.21 -0.0 3,256,421 - Pf6N2E2_2768 0.21 +0.2 3,256,421 - Pf6N2E2_2768 0.21 -0.2 3,256,421 - Pf6N2E2_2768 0.21 +0.4 3,256,450 + Pf6N2E2_2768 0.24 -0.3 3,256,450 + Pf6N2E2_2768 0.24 -0.1 3,256,450 + Pf6N2E2_2768 0.24 +0.0 3,256,594 + Pf6N2E2_2768 0.38 -0.3 3,256,595 - Pf6N2E2_2768 0.38 -0.5 3,256,595 - Pf6N2E2_2768 0.38 +0.8 3,256,649 + Pf6N2E2_2768 0.44 +0.1 3,256,649 + Pf6N2E2_2768 0.44 -0.3 3,256,775 - Pf6N2E2_2768 0.57 +0.6 3,256,775 - Pf6N2E2_2768 0.57 +1.0 3,256,775 - Pf6N2E2_2768 0.57 +0.8
Or see this region's nucleotide sequence