Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2765

Experiment: sodium fluoride 15 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2764 and Pf6N2E2_2765 overlap by 8 nucleotidesPf6N2E2_2765 and Pf6N2E2_2766 overlap by 27 nucleotidesPf6N2E2_2766 and Pf6N2E2_2767 are separated by 186 nucleotidesPf6N2E2_2767 and Pf6N2E2_2768 are separated by 24 nucleotides Pf6N2E2_2764 - Tricarboxylate transport sensor protein TctE, at 3,253,731 to 3,255,122 _2764 Pf6N2E2_2765 - Tricarboxylate transport transcriptional regulator TctD, at 3,255,115 to 3,255,786 _2765 Pf6N2E2_2766 - hypothetical protein, at 3,255,760 to 3,255,888 _2766 Pf6N2E2_2767 - hypothetical protein, at 3,256,075 to 3,256,188 _2767 Pf6N2E2_2768 - Tricarboxylate transport protein TctC, at 3,256,213 to 3,257,205 _2768 Position (kb) 3255 3256Strain fitness (log2 ratio) -2 -1 0 1 2at 3254.255 kb on + strand, within Pf6N2E2_2764at 3254.255 kb on + strand, within Pf6N2E2_2764at 3254.256 kb on - strand, within Pf6N2E2_2764at 3254.256 kb on - strand, within Pf6N2E2_2764at 3254.256 kb on - strand, within Pf6N2E2_2764at 3254.758 kb on + strand, within Pf6N2E2_2764at 3254.759 kb on - strand, within Pf6N2E2_2764at 3254.759 kb on - strand, within Pf6N2E2_2764at 3254.866 kb on + strand, within Pf6N2E2_2764at 3254.869 kb on + strand, within Pf6N2E2_2764at 3254.869 kb on + strand, within Pf6N2E2_2764at 3254.869 kb on + strand, within Pf6N2E2_2764at 3254.869 kb on + strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.870 kb on - strand, within Pf6N2E2_2764at 3254.891 kb on - strand, within Pf6N2E2_2764at 3254.900 kb on + strand, within Pf6N2E2_2764at 3254.900 kb on + strand, within Pf6N2E2_2764at 3254.900 kb on + strand, within Pf6N2E2_2764at 3254.914 kb on + strand, within Pf6N2E2_2764at 3254.914 kb on + strand, within Pf6N2E2_2764at 3254.915 kb on - strand, within Pf6N2E2_2764at 3254.998 kb on + strandat 3255.060 kb on + strandat 3255.060 kb on + strandat 3255.116 kb on + strandat 3255.116 kb on + strandat 3255.116 kb on + strandat 3255.116 kb on + strandat 3255.117 kb on - strandat 3255.209 kb on + strand, within Pf6N2E2_2765at 3255.209 kb on + strand, within Pf6N2E2_2765at 3255.209 kb on + strand, within Pf6N2E2_2765at 3255.210 kb on - strand, within Pf6N2E2_2765at 3255.210 kb on - strand, within Pf6N2E2_2765at 3255.387 kb on - strand, within Pf6N2E2_2765at 3255.387 kb on - strand, within Pf6N2E2_2765at 3255.494 kb on + strand, within Pf6N2E2_2765at 3255.495 kb on - strand, within Pf6N2E2_2765at 3255.924 kb on + strandat 3255.931 kb on - strandat 3255.998 kb on + strandat 3255.998 kb on + strandat 3255.999 kb on - strandat 3255.999 kb on - strandat 3255.999 kb on - strandat 3255.999 kb on - strandat 3256.008 kb on - strandat 3256.019 kb on - strandat 3256.043 kb on - strandat 3256.043 kb on - strandat 3256.188 kb on + strandat 3256.231 kb on - strandat 3256.231 kb on - strandat 3256.231 kb on - strandat 3256.235 kb on + strandat 3256.236 kb on - strandat 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.420 kb on + strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.421 kb on - strand, within Pf6N2E2_2768at 3256.450 kb on + strand, within Pf6N2E2_2768at 3256.450 kb on + strand, within Pf6N2E2_2768at 3256.450 kb on + strand, within Pf6N2E2_2768at 3256.594 kb on + strand, within Pf6N2E2_2768at 3256.595 kb on - strand, within Pf6N2E2_2768at 3256.595 kb on - strand, within Pf6N2E2_2768at 3256.649 kb on + strand, within Pf6N2E2_2768at 3256.649 kb on + strand, within Pf6N2E2_2768at 3256.775 kb on - strand, within Pf6N2E2_2768at 3256.775 kb on - strand, within Pf6N2E2_2768at 3256.775 kb on - strand, within Pf6N2E2_2768

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 15 mM
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3,254,255 + Pf6N2E2_2764 0.38 +0.4
3,254,255 + Pf6N2E2_2764 0.38 +0.5
3,254,256 - Pf6N2E2_2764 0.38 +0.9
3,254,256 - Pf6N2E2_2764 0.38 +0.1
3,254,256 - Pf6N2E2_2764 0.38 +0.1
3,254,758 + Pf6N2E2_2764 0.74 -0.2
3,254,759 - Pf6N2E2_2764 0.74 -0.1
3,254,759 - Pf6N2E2_2764 0.74 +0.2
3,254,866 + Pf6N2E2_2764 0.82 +0.9
3,254,869 + Pf6N2E2_2764 0.82 +0.8
3,254,869 + Pf6N2E2_2764 0.82 +0.2
3,254,869 + Pf6N2E2_2764 0.82 +0.2
3,254,869 + Pf6N2E2_2764 0.82 -2.0
3,254,870 - Pf6N2E2_2764 0.82 +0.2
3,254,870 - Pf6N2E2_2764 0.82 -0.2
3,254,870 - Pf6N2E2_2764 0.82 -0.2
3,254,870 - Pf6N2E2_2764 0.82 -0.6
3,254,870 - Pf6N2E2_2764 0.82 -0.1
3,254,870 - Pf6N2E2_2764 0.82 +0.5
3,254,891 - Pf6N2E2_2764 0.83 -0.6
3,254,900 + Pf6N2E2_2764 0.84 -0.5
3,254,900 + Pf6N2E2_2764 0.84 -0.3
3,254,900 + Pf6N2E2_2764 0.84 +0.7
3,254,914 + Pf6N2E2_2764 0.85 -0.3
3,254,914 + Pf6N2E2_2764 0.85 +1.5
3,254,915 - Pf6N2E2_2764 0.85 +0.8
3,254,998 + +0.9
3,255,060 + -0.3
3,255,060 + +0.2
3,255,116 + +0.4
3,255,116 + -0.1
3,255,116 + +2.4
3,255,116 + -0.5
3,255,117 - -0.8
3,255,209 + Pf6N2E2_2765 0.14 -0.6
3,255,209 + Pf6N2E2_2765 0.14 -0.3
3,255,209 + Pf6N2E2_2765 0.14 +0.4
3,255,210 - Pf6N2E2_2765 0.14 +0.7
3,255,210 - Pf6N2E2_2765 0.14 +0.1
3,255,387 - Pf6N2E2_2765 0.40 -0.2
3,255,387 - Pf6N2E2_2765 0.40 -1.1
3,255,494 + Pf6N2E2_2765 0.56 -1.4
3,255,495 - Pf6N2E2_2765 0.57 -0.6
3,255,924 + +0.8
3,255,931 - +0.3
3,255,998 + +0.1
3,255,998 + +0.3
3,255,999 - -0.3
3,255,999 - -0.6
3,255,999 - -0.9
3,255,999 - -1.2
3,256,008 - -0.6
3,256,019 - -0.8
3,256,043 - -0.1
3,256,043 - +0.9
3,256,188 + -0.5
3,256,231 - +0.8
3,256,231 - +0.3
3,256,231 - -0.9
3,256,235 + +0.5
3,256,236 - -1.2
3,256,420 + Pf6N2E2_2768 0.21 +0.6
3,256,420 + Pf6N2E2_2768 0.21 +0.1
3,256,420 + Pf6N2E2_2768 0.21 +0.8
3,256,420 + Pf6N2E2_2768 0.21 +0.1
3,256,420 + Pf6N2E2_2768 0.21 -0.6
3,256,420 + Pf6N2E2_2768 0.21 +0.7
3,256,421 - Pf6N2E2_2768 0.21 -0.0
3,256,421 - Pf6N2E2_2768 0.21 -0.2
3,256,421 - Pf6N2E2_2768 0.21 -0.8
3,256,421 - Pf6N2E2_2768 0.21 -1.2
3,256,421 - Pf6N2E2_2768 0.21 -0.6
3,256,421 - Pf6N2E2_2768 0.21 -0.3
3,256,421 - Pf6N2E2_2768 0.21 -0.0
3,256,421 - Pf6N2E2_2768 0.21 +0.2
3,256,421 - Pf6N2E2_2768 0.21 -0.2
3,256,421 - Pf6N2E2_2768 0.21 +0.4
3,256,450 + Pf6N2E2_2768 0.24 -0.3
3,256,450 + Pf6N2E2_2768 0.24 -0.1
3,256,450 + Pf6N2E2_2768 0.24 +0.0
3,256,594 + Pf6N2E2_2768 0.38 -0.3
3,256,595 - Pf6N2E2_2768 0.38 -0.5
3,256,595 - Pf6N2E2_2768 0.38 +0.8
3,256,649 + Pf6N2E2_2768 0.44 +0.1
3,256,649 + Pf6N2E2_2768 0.44 -0.3
3,256,775 - Pf6N2E2_2768 0.57 +0.6
3,256,775 - Pf6N2E2_2768 0.57 +1.0
3,256,775 - Pf6N2E2_2768 0.57 +0.8

Or see this region's nucleotide sequence