Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1753

Experiment: sodium fluoride 15 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPf6N2E2_1752 and Pf6N2E2_1753 are separated by 283 nucleotides Pf6N2E2_1752 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 2,067,349 to 2,069,529 _1752 Pf6N2E2_1753 - FIG00643128: hypothetical protein, at 2,069,813 to 2,071,282 _1753 Position (kb) 2069 2070 2071 2072Strain fitness (log2 ratio) -2 -1 0 1at 2068.813 kb on - strand, within Pf6N2E2_1752at 2068.815 kb on - strand, within Pf6N2E2_1752at 2068.815 kb on - strand, within Pf6N2E2_1752at 2068.863 kb on - strand, within Pf6N2E2_1752at 2068.943 kb on + strand, within Pf6N2E2_1752at 2068.943 kb on + strand, within Pf6N2E2_1752at 2068.944 kb on - strand, within Pf6N2E2_1752at 2069.039 kb on + strand, within Pf6N2E2_1752at 2069.143 kb on - strand, within Pf6N2E2_1752at 2069.192 kb on + strand, within Pf6N2E2_1752at 2069.193 kb on - strand, within Pf6N2E2_1752at 2069.253 kb on - strand, within Pf6N2E2_1752at 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.327 kb on + strandat 2069.328 kb on - strandat 2069.328 kb on - strandat 2069.487 kb on + strandat 2069.547 kb on + strandat 2069.614 kb on - strandat 2069.614 kb on - strandat 2069.690 kb on - strandat 2069.703 kb on - strandat 2069.826 kb on + strandat 2069.853 kb on + strandat 2069.854 kb on - strandat 2070.060 kb on - strand, within Pf6N2E2_1753at 2070.334 kb on - strand, within Pf6N2E2_1753at 2070.487 kb on - strand, within Pf6N2E2_1753at 2070.693 kb on - strand, within Pf6N2E2_1753at 2070.925 kb on + strand, within Pf6N2E2_1753at 2071.102 kb on - strand, within Pf6N2E2_1753at 2071.104 kb on + strand, within Pf6N2E2_1753at 2071.160 kb on - strandat 2071.189 kb on - strandat 2071.235 kb on - strandat 2071.294 kb on - strandat 2071.649 kb on - strandat 2071.703 kb on - strandat 2071.940 kb on - strandat 2071.989 kb on - strandat 2072.182 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 15 mM
remove
2,068,813 - Pf6N2E2_1752 0.67 +0.4
2,068,815 - Pf6N2E2_1752 0.67 -0.9
2,068,815 - Pf6N2E2_1752 0.67 +0.2
2,068,863 - Pf6N2E2_1752 0.69 -1.0
2,068,943 + Pf6N2E2_1752 0.73 +0.4
2,068,943 + Pf6N2E2_1752 0.73 +0.6
2,068,944 - Pf6N2E2_1752 0.73 +0.2
2,069,039 + Pf6N2E2_1752 0.77 +0.8
2,069,143 - Pf6N2E2_1752 0.82 +0.4
2,069,192 + Pf6N2E2_1752 0.85 -2.4
2,069,193 - Pf6N2E2_1752 0.85 +0.3
2,069,253 - Pf6N2E2_1752 0.87 +0.5
2,069,327 + +1.6
2,069,327 + -0.8
2,069,327 + +0.6
2,069,327 + -0.1
2,069,327 + -1.1
2,069,327 + +1.0
2,069,327 + +1.6
2,069,328 - +0.9
2,069,328 - -1.3
2,069,487 + +1.2
2,069,547 + -0.5
2,069,614 - +0.3
2,069,614 - +0.9
2,069,690 - +0.2
2,069,703 - +0.3
2,069,826 + +0.2
2,069,853 + +0.2
2,069,854 - +0.5
2,070,060 - Pf6N2E2_1753 0.17 +0.0
2,070,334 - Pf6N2E2_1753 0.35 -0.5
2,070,487 - Pf6N2E2_1753 0.46 -0.2
2,070,693 - Pf6N2E2_1753 0.60 -0.8
2,070,925 + Pf6N2E2_1753 0.76 -1.4
2,071,102 - Pf6N2E2_1753 0.88 +0.0
2,071,104 + Pf6N2E2_1753 0.88 -1.7
2,071,160 - +0.4
2,071,189 - -0.0
2,071,235 - -0.1
2,071,294 - -0.1
2,071,649 - -0.7
2,071,703 - +0.1
2,071,940 - +0.6
2,071,989 - -0.2
2,072,182 + -0.1

Or see this region's nucleotide sequence