Experiment: sodium fluoride 15 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_1026 and Pf6N2E2_1027 overlap by 4 nucleotides Pf6N2E2_1027 and Pf6N2E2_1028 are separated by 195 nucleotides
Pf6N2E2_1026 - Rhodanese-related sulfurtransferase, at 1,199,480 to 1,201,063
_1026
Pf6N2E2_1027 - Cysteine dioxygenase (EC 1.13.11.20), at 1,201,060 to 1,201,695
_1027
Pf6N2E2_1028 - Transcriptional regulator, LysR family, at 1,201,891 to 1,202,796
_1028
Position (kb)
1201
1202 Strain fitness (log2 ratio)
-2
-1
0
1 at 1200.219 kb on + strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.220 kb on - strand, within Pf6N2E2_1026 at 1200.686 kb on - strand, within Pf6N2E2_1026 at 1200.808 kb on - strand, within Pf6N2E2_1026 at 1200.808 kb on - strand, within Pf6N2E2_1026 at 1200.808 kb on - strand, within Pf6N2E2_1026 at 1200.903 kb on + strand, within Pf6N2E2_1026 at 1201.052 kb on + strand at 1201.053 kb on - strand at 1201.064 kb on - strand at 1201.157 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.481 kb on + strand, within Pf6N2E2_1027 at 1201.482 kb on - strand at 1201.482 kb on - strand, within Pf6N2E2_1027 at 1201.832 kb on + strand at 1201.864 kb on - strand at 1201.864 kb on - strand at 1201.864 kb on - strand at 1202.449 kb on + strand, within Pf6N2E2_1028 at 1202.449 kb on + strand, within Pf6N2E2_1028 at 1202.449 kb on + strand, within Pf6N2E2_1028
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 15 mM remove 1,200,219 + Pf6N2E2_1026 0.47 -2.1 1,200,220 - Pf6N2E2_1026 0.47 -0.1 1,200,220 - Pf6N2E2_1026 0.47 +0.9 1,200,220 - Pf6N2E2_1026 0.47 +0.0 1,200,220 - Pf6N2E2_1026 0.47 -1.6 1,200,220 - Pf6N2E2_1026 0.47 +0.1 1,200,220 - Pf6N2E2_1026 0.47 -0.3 1,200,220 - Pf6N2E2_1026 0.47 +0.7 1,200,686 - Pf6N2E2_1026 0.76 +1.3 1,200,808 - Pf6N2E2_1026 0.84 -1.4 1,200,808 - Pf6N2E2_1026 0.84 +0.6 1,200,808 - Pf6N2E2_1026 0.84 -0.4 1,200,903 + Pf6N2E2_1026 0.90 +0.2 1,201,052 + -0.6 1,201,053 - +0.5 1,201,064 - -1.2 1,201,157 + Pf6N2E2_1027 0.15 -1.0 1,201,481 + Pf6N2E2_1027 0.66 -0.4 1,201,481 + Pf6N2E2_1027 0.66 +0.4 1,201,481 + Pf6N2E2_1027 0.66 -1.7 1,201,482 - -1.1 1,201,482 - Pf6N2E2_1027 0.66 -0.6 1,201,832 + +0.3 1,201,864 - +0.3 1,201,864 - -0.5 1,201,864 - -0.6 1,202,449 + Pf6N2E2_1028 0.62 -0.1 1,202,449 + Pf6N2E2_1028 0.62 +0.6 1,202,449 + Pf6N2E2_1028 0.62 +0.2
Or see this region's nucleotide sequence