Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00753

Experiment: PYE 0.5x 4C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00752 and CCNA_00753 are separated by 137 nucleotidesCCNA_00753 and CCNA_00754 are separated by 157 nucleotides CCNA_00752: CCNA_00752 - 3-hydroxybutyryl-CoA dehydrogenase, at 810,384 to 811,262 _00752 CCNA_00753: CCNA_00753 - lysine 2,3-aminomutase, at 811,400 to 812,437 _00753 CCNA_00754: CCNA_00754 - Nodulin-21 / CCC1-related protein, at 812,595 to 813,296 _00754 Position (kb) 811 812 813Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 810.466 kb on + strandat 810.504 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.511 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.546 kb on + strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.554 kb on - strand, within CCNA_00752at 810.572 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.577 kb on - strand, within CCNA_00752at 810.590 kb on + strandat 810.631 kb on + strand, within CCNA_00752at 810.640 kb on + strand, within CCNA_00752at 810.648 kb on - strand, within CCNA_00752at 810.650 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.652 kb on + strand, within CCNA_00752at 810.660 kb on - strand, within CCNA_00752at 810.721 kb on - strand, within CCNA_00752at 810.771 kb on + strand, within CCNA_00752at 810.779 kb on - strand, within CCNA_00752at 810.802 kb on + strand, within CCNA_00752at 810.811 kb on + strand, within CCNA_00752at 810.819 kb on - strand, within CCNA_00752at 810.832 kb on - strand, within CCNA_00752at 810.887 kb on + strand, within CCNA_00752at 810.937 kb on + strand, within CCNA_00752at 810.939 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 810.952 kb on - strand, within CCNA_00752at 811.025 kb on + strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.033 kb on - strand, within CCNA_00752at 811.054 kb on - strand, within CCNA_00752at 811.061 kb on - strand, within CCNA_00752at 811.116 kb on - strand, within CCNA_00752at 811.138 kb on + strand, within CCNA_00752at 811.175 kb on + strandat 811.177 kb on - strandat 811.183 kb on - strandat 811.218 kb on + strandat 811.302 kb on + strandat 811.310 kb on - strandat 811.310 kb on - strandat 811.342 kb on + strandat 811.342 kb on + strandat 811.350 kb on - strandat 811.350 kb on - strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.352 kb on + strandat 811.358 kb on + strandat 811.360 kb on - strandat 811.360 kb on - strandat 811.391 kb on - strandat 811.418 kb on + strandat 811.433 kb on + strandat 811.465 kb on + strandat 811.465 kb on + strandat 811.475 kb on + strandat 811.475 kb on + strandat 811.476 kb on + strandat 811.483 kb on - strandat 811.483 kb on - strandat 811.483 kb on - strandat 811.528 kb on - strand, within CCNA_00753at 811.534 kb on - strand, within CCNA_00753at 811.540 kb on - strand, within CCNA_00753at 811.540 kb on - strand, within CCNA_00753at 811.542 kb on + strand, within CCNA_00753at 811.637 kb on - strand, within CCNA_00753at 811.638 kb on + strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.646 kb on - strand, within CCNA_00753at 811.670 kb on - strand, within CCNA_00753at 811.694 kb on + strand, within CCNA_00753at 811.696 kb on + strand, within CCNA_00753at 811.702 kb on - strand, within CCNA_00753at 811.709 kb on + strand, within CCNA_00753at 811.725 kb on - strand, within CCNA_00753at 811.727 kb on - strand, within CCNA_00753at 811.746 kb on + strand, within CCNA_00753at 811.776 kb on + strand, within CCNA_00753at 811.818 kb on - strand, within CCNA_00753at 811.818 kb on - strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.911 kb on + strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 811.919 kb on - strand, within CCNA_00753at 812.002 kb on + strand, within CCNA_00753at 812.004 kb on + strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.010 kb on - strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.033 kb on + strand, within CCNA_00753at 812.036 kb on - strand, within CCNA_00753at 812.041 kb on - strand, within CCNA_00753at 812.051 kb on - strand, within CCNA_00753at 812.065 kb on + strand, within CCNA_00753at 812.082 kb on + strand, within CCNA_00753at 812.085 kb on - strand, within CCNA_00753at 812.114 kb on + strand, within CCNA_00753at 812.122 kb on - strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.129 kb on + strand, within CCNA_00753at 812.132 kb on - strand, within CCNA_00753at 812.132 kb on - strand, within CCNA_00753at 812.137 kb on - strand, within CCNA_00753at 812.147 kb on - strand, within CCNA_00753at 812.160 kb on + strand, within CCNA_00753at 812.165 kb on + strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.168 kb on - strand, within CCNA_00753at 812.173 kb on - strand, within CCNA_00753at 812.182 kb on + strand, within CCNA_00753at 812.182 kb on + strand, within CCNA_00753at 812.190 kb on - strand, within CCNA_00753at 812.190 kb on - strand, within CCNA_00753at 812.192 kb on - strand, within CCNA_00753at 812.197 kb on - strand, within CCNA_00753at 812.234 kb on + strand, within CCNA_00753at 812.243 kb on - strand, within CCNA_00753at 812.295 kb on + strand, within CCNA_00753at 812.313 kb on - strand, within CCNA_00753at 812.361 kb on - strandat 812.371 kb on + strandat 812.388 kb on - strandat 812.397 kb on + strandat 812.405 kb on - strandat 812.419 kb on + strandat 812.420 kb on + strandat 812.420 kb on + strandat 812.420 kb on + strandat 812.428 kb on - strandat 812.428 kb on - strandat 812.428 kb on - strandat 812.428 kb on - strandat 812.428 kb on - strandat 812.428 kb on - strandat 812.429 kb on + strandat 812.435 kb on + strandat 812.441 kb on + strandat 812.443 kb on - strandat 812.508 kb on - strandat 812.593 kb on + strandat 812.603 kb on - strandat 812.603 kb on - strandat 812.605 kb on + strandat 812.613 kb on - strandat 812.638 kb on + strandat 812.643 kb on + strandat 812.643 kb on + strandat 812.651 kb on - strandat 812.653 kb on + strandat 812.653 kb on + strandat 812.721 kb on - strand, within CCNA_00754at 812.721 kb on - strand, within CCNA_00754at 812.721 kb on - strand, within CCNA_00754at 812.726 kb on - strand, within CCNA_00754at 812.726 kb on - strand, within CCNA_00754at 812.726 kb on - strand, within CCNA_00754at 812.726 kb on - strand, within CCNA_00754at 812.732 kb on + strand, within CCNA_00754at 812.736 kb on + strand, within CCNA_00754at 812.736 kb on - strand, within CCNA_00754at 812.743 kb on - strand, within CCNA_00754at 812.743 kb on - strand, within CCNA_00754at 812.744 kb on - strand, within CCNA_00754at 812.744 kb on - strand, within CCNA_00754at 812.776 kb on + strand, within CCNA_00754at 812.838 kb on + strand, within CCNA_00754at 812.838 kb on + strand, within CCNA_00754at 812.838 kb on + strand, within CCNA_00754at 812.838 kb on + strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.846 kb on - strand, within CCNA_00754at 812.869 kb on - strand, within CCNA_00754at 812.871 kb on - strand, within CCNA_00754at 812.923 kb on + strand, within CCNA_00754at 812.942 kb on + strand, within CCNA_00754at 813.034 kb on - strand, within CCNA_00754at 813.055 kb on - strand, within CCNA_00754at 813.100 kb on - strand, within CCNA_00754at 813.126 kb on + strand, within CCNA_00754at 813.154 kb on - strand, within CCNA_00754at 813.154 kb on - strand, within CCNA_00754at 813.157 kb on + strand, within CCNA_00754at 813.178 kb on + strand, within CCNA_00754at 813.222 kb on + strand, within CCNA_00754at 813.281 kb on + strandat 813.291 kb on + strandat 813.291 kb on + strandat 813.300 kb on - strandat 813.313 kb on - strandat 813.317 kb on - strandat 813.320 kb on + strandat 813.320 kb on + strandat 813.320 kb on + strandat 813.328 kb on - strandat 813.333 kb on - strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.344 kb on + strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.352 kb on - strandat 813.366 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.373 kb on + strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.381 kb on - strandat 813.386 kb on + strandat 813.427 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep3 28 days
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810,466 + -1.1
810,504 + CCNA_00752 0.14 -1.5
810,511 + CCNA_00752 0.14 -2.0
810,511 + CCNA_00752 0.14 -0.1
810,546 + CCNA_00752 0.18 -2.3
810,546 + CCNA_00752 0.18 -2.2
810,554 - CCNA_00752 0.19 +0.4
810,554 - CCNA_00752 0.19 -0.6
810,554 - CCNA_00752 0.19 +0.0
810,554 - CCNA_00752 0.19 +0.5
810,572 - CCNA_00752 0.21 -0.3
810,577 - CCNA_00752 0.22 +0.4
810,577 - CCNA_00752 0.22 +1.2
810,590 + -1.4
810,631 + CCNA_00752 0.28 -2.3
810,640 + CCNA_00752 0.29 -1.6
810,648 - CCNA_00752 0.30 -0.7
810,650 + CCNA_00752 0.30 -1.6
810,652 + CCNA_00752 0.30 +0.7
810,652 + CCNA_00752 0.30 -0.6
810,660 - CCNA_00752 0.31 -0.3
810,721 - CCNA_00752 0.38 +0.3
810,771 + CCNA_00752 0.44 +1.1
810,779 - CCNA_00752 0.45 +0.6
810,802 + CCNA_00752 0.48 -1.3
810,811 + CCNA_00752 0.49 +0.6
810,819 - CCNA_00752 0.49 -2.6
810,832 - CCNA_00752 0.51 +0.6
810,887 + CCNA_00752 0.57 -2.6
810,937 + CCNA_00752 0.63 -2.6
810,939 - CCNA_00752 0.63 +0.2
810,952 - CCNA_00752 0.65 +0.8
810,952 - CCNA_00752 0.65 +0.3
810,952 - CCNA_00752 0.65 -1.4
811,025 + CCNA_00752 0.73 -2.5
811,033 - CCNA_00752 0.74 -0.9
811,033 - CCNA_00752 0.74 -0.2
811,054 - CCNA_00752 0.76 -0.1
811,061 - CCNA_00752 0.77 -0.1
811,116 - CCNA_00752 0.83 -0.1
811,138 + CCNA_00752 0.86 -2.6
811,175 + +0.6
811,177 - -0.2
811,183 - +2.2
811,218 + -4.4
811,302 + -2.6
811,310 - +0.7
811,310 - +1.5
811,342 + +0.1
811,342 + -2.0
811,350 - +1.6
811,350 - +1.1
811,352 + -0.6
811,352 + -0.7
811,352 + -1.0
811,352 + +1.6
811,358 + -2.0
811,360 - -1.2
811,360 - -1.0
811,391 - -2.4
811,418 + +1.6
811,433 + +0.4
811,465 + +0.2
811,465 + -1.4
811,475 + +0.2
811,475 + -1.9
811,476 + -2.2
811,483 - -0.4
811,483 - +1.8
811,483 - +0.9
811,528 - CCNA_00753 0.12 +1.1
811,534 - CCNA_00753 0.13 +0.4
811,540 - CCNA_00753 0.13 -0.3
811,540 - CCNA_00753 0.13 -1.2
811,542 + CCNA_00753 0.14 +1.6
811,637 - CCNA_00753 0.23 +0.7
811,638 + CCNA_00753 0.23 -0.9
811,646 - CCNA_00753 0.24 +0.8
811,646 - CCNA_00753 0.24 +2.9
811,646 - CCNA_00753 0.24 +0.5
811,646 - CCNA_00753 0.24 -0.1
811,670 - CCNA_00753 0.26 -0.6
811,694 + CCNA_00753 0.28 +0.4
811,696 + CCNA_00753 0.29 +0.8
811,702 - CCNA_00753 0.29 +1.2
811,709 + CCNA_00753 0.30 +2.1
811,725 - CCNA_00753 0.31 +0.4
811,727 - CCNA_00753 0.32 +1.3
811,746 + CCNA_00753 0.33 -1.2
811,776 + CCNA_00753 0.36 -2.3
811,818 - CCNA_00753 0.40 -1.0
811,818 - CCNA_00753 0.40 +1.4
811,911 + CCNA_00753 0.49 -0.4
811,911 + CCNA_00753 0.49 +1.1
811,911 + CCNA_00753 0.49 -2.0
811,911 + CCNA_00753 0.49 +0.6
811,911 + CCNA_00753 0.49 -0.2
811,911 + CCNA_00753 0.49 +0.1
811,919 - CCNA_00753 0.50 +1.1
811,919 - CCNA_00753 0.50 -1.4
811,919 - CCNA_00753 0.50 +1.1
811,919 - CCNA_00753 0.50 -1.1
812,002 + CCNA_00753 0.58 -1.5
812,004 + CCNA_00753 0.58 +0.9
812,010 - CCNA_00753 0.59 +2.3
812,010 - CCNA_00753 0.59 +1.8
812,010 - CCNA_00753 0.59 +0.8
812,033 + CCNA_00753 0.61 +1.9
812,033 + CCNA_00753 0.61 -0.9
812,033 + CCNA_00753 0.61 +4.1
812,036 - CCNA_00753 0.61 -0.4
812,041 - CCNA_00753 0.62 +1.5
812,051 - CCNA_00753 0.63 +0.3
812,065 + CCNA_00753 0.64 -0.9
812,082 + CCNA_00753 0.66 +1.1
812,085 - CCNA_00753 0.66 +0.4
812,114 + CCNA_00753 0.69 +4.2
812,122 - CCNA_00753 0.70 -0.4
812,129 + CCNA_00753 0.70 +1.5
812,129 + CCNA_00753 0.70 -2.4
812,129 + CCNA_00753 0.70 +3.1
812,129 + CCNA_00753 0.70 -1.5
812,132 - CCNA_00753 0.71 +0.4
812,132 - CCNA_00753 0.71 -1.0
812,137 - CCNA_00753 0.71 +2.2
812,147 - CCNA_00753 0.72 +1.1
812,160 + CCNA_00753 0.73 +0.9
812,165 + CCNA_00753 0.74 -0.6
812,168 - CCNA_00753 0.74 +0.3
812,168 - CCNA_00753 0.74 -1.1
812,168 - CCNA_00753 0.74 +2.1
812,173 - CCNA_00753 0.74 -1.4
812,182 + CCNA_00753 0.75 +0.5
812,182 + CCNA_00753 0.75 +1.0
812,190 - CCNA_00753 0.76 +0.9
812,190 - CCNA_00753 0.76 +0.4
812,192 - CCNA_00753 0.76 +0.4
812,197 - CCNA_00753 0.77 +1.7
812,234 + CCNA_00753 0.80 -1.0
812,243 - CCNA_00753 0.81 -2.1
812,295 + CCNA_00753 0.86 +1.3
812,313 - CCNA_00753 0.88 -0.1
812,361 - -1.7
812,371 + -2.0
812,388 - -0.4
812,397 + -0.5
812,405 - +0.4
812,419 + +2.4
812,420 + -0.3
812,420 + +0.4
812,420 + -2.3
812,428 - +1.4
812,428 - -0.1
812,428 - +0.9
812,428 - +2.2
812,428 - -0.4
812,428 - +1.7
812,429 + +1.7
812,435 + -0.1
812,441 + +0.8
812,443 - +1.5
812,508 - +0.9
812,593 + -0.8
812,603 - -0.1
812,603 - +0.6
812,605 + -0.5
812,613 - +0.4
812,638 + -2.4
812,643 + -2.3
812,643 + -0.9
812,651 - +0.2
812,653 + +0.8
812,653 + -0.8
812,721 - CCNA_00754 0.18 -0.6
812,721 - CCNA_00754 0.18 +1.2
812,721 - CCNA_00754 0.18 +0.5
812,726 - CCNA_00754 0.19 +0.2
812,726 - CCNA_00754 0.19 +0.2
812,726 - CCNA_00754 0.19 +0.3
812,726 - CCNA_00754 0.19 +0.3
812,732 + CCNA_00754 0.20 +1.6
812,736 + CCNA_00754 0.20 +1.9
812,736 - CCNA_00754 0.20 +0.6
812,743 - CCNA_00754 0.21 -1.5
812,743 - CCNA_00754 0.21 -0.7
812,744 - CCNA_00754 0.21 +0.2
812,744 - CCNA_00754 0.21 +1.6
812,776 + CCNA_00754 0.26 -0.8
812,838 + CCNA_00754 0.35 +1.5
812,838 + CCNA_00754 0.35 -0.8
812,838 + CCNA_00754 0.35 -2.2
812,838 + CCNA_00754 0.35 -1.7
812,846 - CCNA_00754 0.36 -0.1
812,846 - CCNA_00754 0.36 -0.1
812,846 - CCNA_00754 0.36 -0.4
812,846 - CCNA_00754 0.36 -0.3
812,846 - CCNA_00754 0.36 -0.4
812,846 - CCNA_00754 0.36 +4.0
812,869 - CCNA_00754 0.39 -0.9
812,871 - CCNA_00754 0.39 +0.2
812,923 + CCNA_00754 0.47 -0.4
812,942 + CCNA_00754 0.49 +1.2
813,034 - CCNA_00754 0.63 +1.6
813,055 - CCNA_00754 0.66 -0.7
813,100 - CCNA_00754 0.72 -0.1
813,126 + CCNA_00754 0.76 -0.2
813,154 - CCNA_00754 0.80 -2.2
813,154 - CCNA_00754 0.80 -0.4
813,157 + CCNA_00754 0.80 -0.2
813,178 + CCNA_00754 0.83 -0.5
813,222 + CCNA_00754 0.89 -0.6
813,281 + +0.2
813,291 + -0.1
813,291 + +0.1
813,300 - -1.8
813,313 - -1.9
813,317 - +0.8
813,320 + -1.0
813,320 + +0.4
813,320 + +0.2
813,328 - +0.9
813,333 - +2.3
813,344 + -0.7
813,344 + +4.2
813,344 + +0.1
813,344 + +2.9
813,344 + +1.6
813,344 + -0.6
813,344 + +2.7
813,344 + -0.9
813,344 + -0.1
813,344 + +0.5
813,344 + -0.8
813,344 + +0.2
813,352 - +1.6
813,352 - +0.3
813,352 - +1.4
813,352 - +0.7
813,352 - +3.0
813,352 - +0.1
813,352 - +0.4
813,352 - +0.2
813,366 + -0.4
813,373 + +2.2
813,373 + +0.4
813,373 + +0.3
813,373 + +0.1
813,373 + -1.5
813,373 + -0.7
813,373 + -1.9
813,373 + +0.3
813,373 + +1.4
813,373 + +0.8
813,373 + -0.2
813,373 + +0.1
813,373 + +1.7
813,373 + +1.0
813,373 + +1.0
813,373 + +0.0
813,373 + +1.5
813,381 - -1.0
813,381 - -1.1
813,381 - -1.6
813,381 - -1.1
813,381 - -1.5
813,381 - -1.9
813,381 - -0.6
813,381 - +1.0
813,381 - -0.8
813,381 - -0.5
813,381 - +1.8
813,381 - +0.2
813,381 - +1.4
813,381 - -2.0
813,386 + -0.1
813,427 + +0.6

Or see this region's nucleotide sequence