Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00603

Experiment: PYE 0.5x 4C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00602 and CCNA_00603 overlap by 4 nucleotidesCCNA_00603 and CCNA_00604 overlap by 23 nucleotidesCCNA_00604 and CCNA_00605 are separated by 109 nucleotides CCNA_00602: CCNA_00602 - von Willebrand factor type A domain protein, at 637,845 to 639,158 _00602 CCNA_00603: CCNA_00603 - integral membrane protein, at 639,155 to 640,153 _00603 CCNA_00604: CCNA_00604 - RDD family membrane protein, at 640,131 to 641,012 _00604 CCNA_00605: CCNA_00605 - hypothetical protein, at 641,122 to 641,910 _00605 Position (kb) 639 640 641Strain fitness (log2 ratio) -2 -1 0 1 2 3at 638.158 kb on - strand, within CCNA_00602at 638.184 kb on + strandat 638.230 kb on - strand, within CCNA_00602at 638.230 kb on - strand, within CCNA_00602at 638.246 kb on + strand, within CCNA_00602at 638.254 kb on - strand, within CCNA_00602at 638.260 kb on + strand, within CCNA_00602at 638.268 kb on - strand, within CCNA_00602at 638.269 kb on + strand, within CCNA_00602at 638.269 kb on + strand, within CCNA_00602at 638.277 kb on - strand, within CCNA_00602at 638.282 kb on - strand, within CCNA_00602at 638.282 kb on - strand, within CCNA_00602at 638.287 kb on - strand, within CCNA_00602at 638.296 kb on + strand, within CCNA_00602at 638.297 kb on - strand, within CCNA_00602at 638.404 kb on - strand, within CCNA_00602at 638.404 kb on - strand, within CCNA_00602at 638.418 kb on + strand, within CCNA_00602at 638.451 kb on - strand, within CCNA_00602at 638.459 kb on + strand, within CCNA_00602at 638.463 kb on - strand, within CCNA_00602at 638.463 kb on - strand, within CCNA_00602at 638.463 kb on - strand, within CCNA_00602at 638.484 kb on - strand, within CCNA_00602at 638.519 kb on + strand, within CCNA_00602at 638.519 kb on + strand, within CCNA_00602at 638.519 kb on + strand, within CCNA_00602at 638.527 kb on - strand, within CCNA_00602at 638.527 kb on - strand, within CCNA_00602at 638.537 kb on + strand, within CCNA_00602at 638.537 kb on + strand, within CCNA_00602at 638.544 kb on - strand, within CCNA_00602at 638.545 kb on - strand, within CCNA_00602at 638.570 kb on + strand, within CCNA_00602at 638.578 kb on - strand, within CCNA_00602at 638.583 kb on + strand, within CCNA_00602at 638.633 kb on - strand, within CCNA_00602at 638.655 kb on - strand, within CCNA_00602at 638.687 kb on - strand, within CCNA_00602at 638.687 kb on - strand, within CCNA_00602at 638.731 kb on + strand, within CCNA_00602at 638.788 kb on + strand, within CCNA_00602at 638.794 kb on + strand, within CCNA_00602at 638.795 kb on - strand, within CCNA_00602at 638.913 kb on - strand, within CCNA_00602at 638.920 kb on + strand, within CCNA_00602at 638.924 kb on + strand, within CCNA_00602at 638.928 kb on - strand, within CCNA_00602at 638.930 kb on + strand, within CCNA_00602at 638.954 kb on + strand, within CCNA_00602at 638.954 kb on + strand, within CCNA_00602at 638.962 kb on - strand, within CCNA_00602at 638.967 kb on + strand, within CCNA_00602at 638.974 kb on - strand, within CCNA_00602at 639.002 kb on - strand, within CCNA_00602at 639.021 kb on + strand, within CCNA_00602at 639.106 kb on + strandat 639.106 kb on + strandat 639.106 kb on + strandat 639.111 kb on + strandat 639.111 kb on + strandat 639.111 kb on + strandat 639.116 kb on + strandat 639.116 kb on + strandat 639.116 kb on + strandat 639.122 kb on + strandat 639.124 kb on - strandat 639.124 kb on - strandat 639.147 kb on + strandat 639.147 kb on + strandat 639.160 kb on - strandat 639.162 kb on + strandat 639.163 kb on + strandat 639.163 kb on + strandat 639.173 kb on + strandat 639.181 kb on + strandat 639.181 kb on + strandat 639.189 kb on - strandat 639.228 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.251 kb on + strandat 639.258 kb on - strand, within CCNA_00603at 639.282 kb on + strand, within CCNA_00603at 639.300 kb on + strand, within CCNA_00603at 639.305 kb on + strand, within CCNA_00603at 639.305 kb on + strand, within CCNA_00603at 639.308 kb on + strand, within CCNA_00603at 639.310 kb on + strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.313 kb on - strand, within CCNA_00603at 639.315 kb on + strand, within CCNA_00603at 639.318 kb on - strand, within CCNA_00603at 639.318 kb on - strand, within CCNA_00603at 639.364 kb on + strand, within CCNA_00603at 639.375 kb on - strand, within CCNA_00603at 639.421 kb on - strand, within CCNA_00603at 639.425 kb on + strand, within CCNA_00603at 639.440 kb on + strand, within CCNA_00603at 639.453 kb on - strand, within CCNA_00603at 639.453 kb on - strand, within CCNA_00603at 639.503 kb on + strand, within CCNA_00603at 639.503 kb on + strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.511 kb on - strand, within CCNA_00603at 639.566 kb on + strand, within CCNA_00603at 639.593 kb on - strand, within CCNA_00603at 639.698 kb on + strand, within CCNA_00603at 639.725 kb on + strand, within CCNA_00603at 639.733 kb on - strand, within CCNA_00603at 639.737 kb on + strand, within CCNA_00603at 639.737 kb on + strand, within CCNA_00603at 639.744 kb on + strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.745 kb on - strand, within CCNA_00603at 639.752 kb on - strand, within CCNA_00603at 639.766 kb on - strand, within CCNA_00603at 639.770 kb on + strand, within CCNA_00603at 639.778 kb on - strand, within CCNA_00603at 639.779 kb on + strand, within CCNA_00603at 639.796 kb on + strand, within CCNA_00603at 639.825 kb on + strand, within CCNA_00603at 639.891 kb on - strand, within CCNA_00603at 639.970 kb on + strand, within CCNA_00603at 640.008 kb on + strand, within CCNA_00603at 640.008 kb on + strand, within CCNA_00603at 640.014 kb on + strand, within CCNA_00603at 640.024 kb on + strand, within CCNA_00603at 640.024 kb on + strand, within CCNA_00603at 640.039 kb on + strand, within CCNA_00603at 640.047 kb on + strand, within CCNA_00603at 640.106 kb on + strandat 640.111 kb on + strandat 640.119 kb on - strandat 640.128 kb on + strandat 640.158 kb on + strandat 640.291 kb on + strand, within CCNA_00604at 640.301 kb on + strand, within CCNA_00604at 640.301 kb on + strand, within CCNA_00604at 640.447 kb on + strand, within CCNA_00604at 640.457 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.525 kb on + strand, within CCNA_00604at 640.533 kb on - strand, within CCNA_00604at 640.561 kb on + strand, within CCNA_00604at 640.568 kb on + strand, within CCNA_00604at 640.568 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.581 kb on + strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.589 kb on - strand, within CCNA_00604at 640.605 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.643 kb on + strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.651 kb on - strand, within CCNA_00604at 640.702 kb on + strand, within CCNA_00604at 640.702 kb on + strand, within CCNA_00604at 640.704 kb on + strand, within CCNA_00604at 640.707 kb on + strand, within CCNA_00604at 640.709 kb on + strand, within CCNA_00604at 640.714 kb on + strand, within CCNA_00604at 640.731 kb on + strand, within CCNA_00604at 640.741 kb on + strand, within CCNA_00604at 640.773 kb on - strand, within CCNA_00604at 640.775 kb on + strand, within CCNA_00604at 640.775 kb on + strand, within CCNA_00604at 640.783 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.784 kb on - strand, within CCNA_00604at 640.789 kb on - strand, within CCNA_00604at 640.856 kb on + strand, within CCNA_00604at 640.914 kb on + strand, within CCNA_00604at 640.914 kb on + strand, within CCNA_00604at 640.944 kb on + strandat 640.944 kb on + strandat 640.949 kb on + strandat 640.949 kb on + strandat 640.949 kb on + strandat 641.025 kb on + strandat 641.028 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep3 28 days
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638,158 - CCNA_00602 0.24 +0.2
638,184 + -0.1
638,230 - CCNA_00602 0.29 +0.7
638,230 - CCNA_00602 0.29 -0.7
638,246 + CCNA_00602 0.31 -0.7
638,254 - CCNA_00602 0.31 +0.1
638,260 + CCNA_00602 0.32 +0.9
638,268 - CCNA_00602 0.32 +0.2
638,269 + CCNA_00602 0.32 +0.1
638,269 + CCNA_00602 0.32 +2.1
638,277 - CCNA_00602 0.33 -0.9
638,282 - CCNA_00602 0.33 +1.6
638,282 - CCNA_00602 0.33 -0.7
638,287 - CCNA_00602 0.34 +0.6
638,296 + CCNA_00602 0.34 -2.5
638,297 - CCNA_00602 0.34 +0.2
638,404 - CCNA_00602 0.43 +0.4
638,404 - CCNA_00602 0.43 +1.2
638,418 + CCNA_00602 0.44 +1.3
638,451 - CCNA_00602 0.46 -1.0
638,459 + CCNA_00602 0.47 +0.8
638,463 - CCNA_00602 0.47 -0.5
638,463 - CCNA_00602 0.47 +1.2
638,463 - CCNA_00602 0.47 -1.2
638,484 - CCNA_00602 0.49 +1.2
638,519 + CCNA_00602 0.51 -1.2
638,519 + CCNA_00602 0.51 -2.5
638,519 + CCNA_00602 0.51 -0.5
638,527 - CCNA_00602 0.52 -0.1
638,527 - CCNA_00602 0.52 +3.5
638,537 + CCNA_00602 0.53 +0.3
638,537 + CCNA_00602 0.53 +0.0
638,544 - CCNA_00602 0.53 +1.0
638,545 - CCNA_00602 0.53 -1.3
638,570 + CCNA_00602 0.55 -0.4
638,578 - CCNA_00602 0.56 -0.7
638,583 + CCNA_00602 0.56 +0.7
638,633 - CCNA_00602 0.60 +2.2
638,655 - CCNA_00602 0.62 +0.2
638,687 - CCNA_00602 0.64 +1.2
638,687 - CCNA_00602 0.64 +0.1
638,731 + CCNA_00602 0.67 -0.5
638,788 + CCNA_00602 0.72 -1.4
638,794 + CCNA_00602 0.72 +0.1
638,795 - CCNA_00602 0.72 -0.1
638,913 - CCNA_00602 0.81 -0.8
638,920 + CCNA_00602 0.82 +0.2
638,924 + CCNA_00602 0.82 +1.8
638,928 - CCNA_00602 0.82 +1.5
638,930 + CCNA_00602 0.83 +2.2
638,954 + CCNA_00602 0.84 -0.8
638,954 + CCNA_00602 0.84 +1.2
638,962 - CCNA_00602 0.85 +1.1
638,967 + CCNA_00602 0.85 +0.8
638,974 - CCNA_00602 0.86 -1.2
639,002 - CCNA_00602 0.88 +2.2
639,021 + CCNA_00602 0.89 +0.6
639,106 + -1.8
639,106 + +1.2
639,106 + +0.3
639,111 + -0.2
639,111 + +1.0
639,111 + +1.0
639,116 + +0.1
639,116 + +0.8
639,116 + -0.1
639,122 + +0.4
639,124 - +0.5
639,124 - -0.4
639,147 + -0.5
639,147 + +2.2
639,160 - -1.2
639,162 + -0.7
639,163 + -0.9
639,163 + -0.2
639,173 + +2.5
639,181 + +1.1
639,181 + +1.2
639,189 - -0.2
639,228 + +1.0
639,251 + +1.4
639,251 + +0.3
639,251 + +3.2
639,251 + +0.4
639,258 - CCNA_00603 0.10 +1.0
639,282 + CCNA_00603 0.13 -2.4
639,300 + CCNA_00603 0.15 -1.7
639,305 + CCNA_00603 0.15 +0.5
639,305 + CCNA_00603 0.15 -0.5
639,308 + CCNA_00603 0.15 -1.7
639,310 + CCNA_00603 0.16 -0.3
639,313 - CCNA_00603 0.16 -0.1
639,313 - CCNA_00603 0.16 +2.2
639,313 - CCNA_00603 0.16 +1.6
639,315 + CCNA_00603 0.16 -0.0
639,318 - CCNA_00603 0.16 -2.5
639,318 - CCNA_00603 0.16 +0.6
639,364 + CCNA_00603 0.21 +2.2
639,375 - CCNA_00603 0.22 -0.2
639,421 - CCNA_00603 0.27 +0.0
639,425 + CCNA_00603 0.27 -0.6
639,440 + CCNA_00603 0.29 -0.7
639,453 - CCNA_00603 0.30 +1.2
639,453 - CCNA_00603 0.30 +1.2
639,503 + CCNA_00603 0.35 -0.2
639,503 + CCNA_00603 0.35 -0.3
639,511 - CCNA_00603 0.36 +0.6
639,511 - CCNA_00603 0.36 +2.2
639,511 - CCNA_00603 0.36 -0.1
639,566 + CCNA_00603 0.41 +0.6
639,593 - CCNA_00603 0.44 -1.6
639,698 + CCNA_00603 0.54 -0.4
639,725 + CCNA_00603 0.57 +3.1
639,733 - CCNA_00603 0.58 -0.3
639,737 + CCNA_00603 0.58 -0.9
639,737 + CCNA_00603 0.58 +1.9
639,744 + CCNA_00603 0.59 -0.6
639,745 - CCNA_00603 0.59 -0.1
639,745 - CCNA_00603 0.59 -0.6
639,745 - CCNA_00603 0.59 -2.6
639,745 - CCNA_00603 0.59 -0.1
639,745 - CCNA_00603 0.59 +3.2
639,745 - CCNA_00603 0.59 +3.2
639,752 - CCNA_00603 0.60 -1.4
639,766 - CCNA_00603 0.61 +1.3
639,770 + CCNA_00603 0.62 -0.5
639,778 - CCNA_00603 0.62 -1.0
639,779 + CCNA_00603 0.62 +0.6
639,796 + CCNA_00603 0.64 +1.5
639,825 + CCNA_00603 0.67 +1.4
639,891 - CCNA_00603 0.74 +2.5
639,970 + CCNA_00603 0.82 +1.0
640,008 + CCNA_00603 0.85 +0.8
640,008 + CCNA_00603 0.85 +1.9
640,014 + CCNA_00603 0.86 +1.6
640,024 + CCNA_00603 0.87 +0.3
640,024 + CCNA_00603 0.87 +1.2
640,039 + CCNA_00603 0.88 -1.5
640,047 + CCNA_00603 0.89 +0.2
640,106 + +0.6
640,111 + +0.8
640,119 - -0.6
640,128 + +1.1
640,158 + +2.6
640,291 + CCNA_00604 0.18 -0.1
640,301 + CCNA_00604 0.19 +0.4
640,301 + CCNA_00604 0.19 -1.5
640,447 + CCNA_00604 0.36 -0.4
640,457 + CCNA_00604 0.37 -0.2
640,525 + CCNA_00604 0.45 -0.1
640,525 + CCNA_00604 0.45 -1.2
640,525 + CCNA_00604 0.45 -0.4
640,533 - CCNA_00604 0.46 +0.2
640,561 + CCNA_00604 0.49 +0.2
640,568 + CCNA_00604 0.50 +0.6
640,568 + CCNA_00604 0.50 -0.7
640,581 + CCNA_00604 0.51 +2.2
640,581 + CCNA_00604 0.51 -0.1
640,581 + CCNA_00604 0.51 +0.2
640,589 - CCNA_00604 0.52 +1.2
640,589 - CCNA_00604 0.52 -0.3
640,589 - CCNA_00604 0.52 -2.6
640,605 + CCNA_00604 0.54 +0.6
640,643 + CCNA_00604 0.58 -2.4
640,643 + CCNA_00604 0.58 -1.6
640,643 + CCNA_00604 0.58 +0.3
640,643 + CCNA_00604 0.58 -0.1
640,651 - CCNA_00604 0.59 -2.4
640,651 - CCNA_00604 0.59 -2.3
640,651 - CCNA_00604 0.59 -0.9
640,651 - CCNA_00604 0.59 -1.2
640,702 + CCNA_00604 0.65 +0.7
640,702 + CCNA_00604 0.65 -1.6
640,704 + CCNA_00604 0.65 -0.4
640,707 + CCNA_00604 0.65 +0.6
640,709 + CCNA_00604 0.66 +0.6
640,714 + CCNA_00604 0.66 +1.4
640,731 + CCNA_00604 0.68 +0.1
640,741 + CCNA_00604 0.69 -1.7
640,773 - CCNA_00604 0.73 -0.3
640,775 + CCNA_00604 0.73 +1.1
640,775 + CCNA_00604 0.73 +0.9
640,783 - CCNA_00604 0.74 -0.3
640,784 - CCNA_00604 0.74 +1.2
640,784 - CCNA_00604 0.74 -0.1
640,784 - CCNA_00604 0.74 -2.4
640,789 - CCNA_00604 0.75 -0.4
640,856 + CCNA_00604 0.82 +0.7
640,914 + CCNA_00604 0.89 -0.3
640,914 + CCNA_00604 0.89 -0.6
640,944 + +0.9
640,944 + +1.3
640,949 + +0.2
640,949 + +1.4
640,949 + -0.3
641,025 + +0.5
641,028 - +0.5

Or see this region's nucleotide sequence