Experiment: PYE 0.5x 4C survival rep3 28 days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00349 and CCNA_00350 overlap by 4 nucleotides CCNA_00350 and CCNA_00351 are separated by 125 nucleotides
CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309
_00349
CCNA_00350: CCNA_00350 - hypothetical protein, at 365,306 to 365,986
_00350
CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271
_00351
Position (kb) 365
366 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 364.312 kb on - strand at 364.339 kb on + strand at 364.339 kb on + strand at 364.345 kb on - strand at 364.399 kb on + strand at 364.399 kb on + strand at 364.407 kb on - strand at 364.407 kb on - strand at 364.407 kb on - strand at 364.407 kb on - strand at 364.407 kb on - strand at 364.468 kb on + strand at 364.481 kb on - strand at 364.493 kb on + strand, within CCNA_00349 at 364.494 kb on + strand, within CCNA_00349 at 364.504 kb on + strand, within CCNA_00349 at 364.535 kb on - strand, within CCNA_00349 at 364.557 kb on - strand, within CCNA_00349 at 364.572 kb on - strand, within CCNA_00349 at 364.581 kb on - strand, within CCNA_00349 at 364.622 kb on - strand, within CCNA_00349 at 364.630 kb on + strand, within CCNA_00349 at 364.638 kb on - strand, within CCNA_00349 at 364.654 kb on + strand, within CCNA_00349 at 364.672 kb on - strand, within CCNA_00349 at 364.687 kb on + strand, within CCNA_00349 at 364.707 kb on + strand, within CCNA_00349 at 364.729 kb on + strand, within CCNA_00349 at 364.747 kb on + strand, within CCNA_00349 at 364.836 kb on - strand, within CCNA_00349 at 364.838 kb on + strand, within CCNA_00349 at 364.843 kb on + strand, within CCNA_00349 at 364.846 kb on - strand, within CCNA_00349 at 364.857 kb on + strand, within CCNA_00349 at 364.857 kb on + strand, within CCNA_00349 at 364.865 kb on - strand, within CCNA_00349 at 364.865 kb on - strand, within CCNA_00349 at 364.865 kb on - strand, within CCNA_00349 at 364.865 kb on - strand, within CCNA_00349 at 364.905 kb on + strand, within CCNA_00349 at 364.913 kb on - strand, within CCNA_00349 at 364.977 kb on - strand, within CCNA_00349 at 365.003 kb on - strand, within CCNA_00349 at 365.017 kb on + strand, within CCNA_00349 at 365.017 kb on + strand, within CCNA_00349 at 365.063 kb on + strand, within CCNA_00349 at 365.065 kb on + strand, within CCNA_00349 at 365.065 kb on + strand, within CCNA_00349 at 365.073 kb on - strand, within CCNA_00349 at 365.073 kb on - strand, within CCNA_00349 at 365.092 kb on - strand, within CCNA_00349 at 365.098 kb on - strand, within CCNA_00349 at 365.113 kb on - strand, within CCNA_00349 at 365.118 kb on - strand, within CCNA_00349 at 365.153 kb on - strand, within CCNA_00349 at 365.165 kb on + strand, within CCNA_00349 at 365.166 kb on + strand, within CCNA_00349 at 365.166 kb on + strand, within CCNA_00349 at 365.174 kb on - strand, within CCNA_00349 at 365.174 kb on - strand, within CCNA_00349 at 365.189 kb on + strand, within CCNA_00349 at 365.283 kb on + strand at 365.287 kb on + strand at 365.295 kb on - strand at 365.311 kb on + strand at 365.316 kb on + strand at 365.319 kb on - strand at 365.321 kb on + strand at 365.321 kb on + strand at 365.329 kb on - strand at 365.506 kb on + strand, within CCNA_00350 at 365.735 kb on - strand, within CCNA_00350 at 365.830 kb on + strand, within CCNA_00350 at 366.008 kb on - strand at 366.009 kb on - strand at 366.080 kb on - strand at 366.103 kb on + strand at 366.103 kb on + strand at 366.103 kb on + strand at 366.112 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep3 28 days remove 364,312 - +1.5 364,339 + +0.1 364,339 + +1.9 364,345 - -0.6 364,399 + +1.2 364,399 + -0.3 364,407 - +1.0 364,407 - +0.4 364,407 - +0.4 364,407 - -0.4 364,407 - +0.6 364,468 + -0.5 364,481 - +1.9 364,493 + CCNA_00349 0.11 -1.7 364,494 + CCNA_00349 0.11 +0.9 364,504 + CCNA_00349 0.12 -0.5 364,535 - CCNA_00349 0.15 -2.2 364,557 - CCNA_00349 0.18 +0.3 364,572 - CCNA_00349 0.19 +0.9 364,581 - CCNA_00349 0.20 -0.3 364,622 - CCNA_00349 0.25 -0.2 364,630 + CCNA_00349 0.26 -2.1 364,638 - CCNA_00349 0.27 -0.9 364,654 + CCNA_00349 0.28 +0.7 364,672 - CCNA_00349 0.30 +0.7 364,687 + CCNA_00349 0.32 +0.7 364,707 + CCNA_00349 0.34 +1.9 364,729 + CCNA_00349 0.37 +0.9 364,747 + CCNA_00349 0.38 +0.5 364,836 - CCNA_00349 0.48 +1.3 364,838 + CCNA_00349 0.48 -1.7 364,843 + CCNA_00349 0.49 -1.4 364,846 - CCNA_00349 0.49 -0.9 364,857 + CCNA_00349 0.50 +0.3 364,857 + CCNA_00349 0.50 -1.1 364,865 - CCNA_00349 0.51 +0.9 364,865 - CCNA_00349 0.51 -0.7 364,865 - CCNA_00349 0.51 +0.5 364,865 - CCNA_00349 0.51 -1.4 364,905 + CCNA_00349 0.56 -0.4 364,913 - CCNA_00349 0.57 -1.1 364,977 - CCNA_00349 0.64 +1.9 365,003 - CCNA_00349 0.66 +0.3 365,017 + CCNA_00349 0.68 -1.5 365,017 + CCNA_00349 0.68 -0.3 365,063 + CCNA_00349 0.73 +1.1 365,065 + CCNA_00349 0.73 -1.0 365,065 + CCNA_00349 0.73 +1.5 365,073 - CCNA_00349 0.74 -0.7 365,073 - CCNA_00349 0.74 -0.5 365,092 - CCNA_00349 0.76 -1.9 365,098 - CCNA_00349 0.77 +0.6 365,113 - CCNA_00349 0.78 +0.0 365,118 - CCNA_00349 0.79 +0.2 365,153 - CCNA_00349 0.83 +0.3 365,165 + CCNA_00349 0.84 -0.9 365,166 + CCNA_00349 0.84 +1.2 365,166 + CCNA_00349 0.84 -3.2 365,174 - CCNA_00349 0.85 +0.8 365,174 - CCNA_00349 0.85 +1.1 365,189 + CCNA_00349 0.87 -0.5 365,283 + +1.4 365,287 + -1.2 365,295 - -1.2 365,311 + -2.3 365,316 + +0.9 365,319 - +0.2 365,321 + -0.1 365,321 + +0.0 365,329 - -1.5 365,506 + CCNA_00350 0.29 -1.9 365,735 - CCNA_00350 0.63 -2.0 365,830 + CCNA_00350 0.77 -1.8 366,008 - -0.3 366,009 - +0.7 366,080 - -1.0 366,103 + +0.0 366,103 + +1.0 366,103 + +1.4 366,112 + +0.1
Or see this region's nucleotide sequence