Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU0739

Experiment: MoYLS4 with Fluorophosphate 1mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU0738 and DVU0739 are separated by 126 nucleotidesDVU0739 and DVU0740 are separated by 276 nucleotides DVU0738: DVU0738 - substrate-binding protein, putative (TIGR), at 825,817 to 826,938 DVU0738 DVU0739: DVU0739 - conserved hypothetical protein TIGR00296 (TIGR), at 827,065 to 827,637 DVU0739 DVU0740: DVU0740 - membrane protein, putative (TIGR), at 827,914 to 829,089 DVU0740 Position (kb) 827 828Strain fitness (log2 ratio) -2 -1 0 1at 826.081 kb on + strand, within DVU0738at 826.114 kb on + strand, within DVU0738at 826.126 kb on + strand, within DVU0738at 826.134 kb on - strand, within DVU0738at 826.166 kb on + strand, within DVU0738at 826.207 kb on + strand, within DVU0738at 826.326 kb on + strand, within DVU0738at 826.334 kb on - strand, within DVU0738at 826.341 kb on - strand, within DVU0738at 826.354 kb on - strand, within DVU0738at 826.378 kb on - strand, within DVU0738at 826.378 kb on - strand, within DVU0738at 826.468 kb on + strand, within DVU0738at 826.469 kb on + strand, within DVU0738at 826.488 kb on + strand, within DVU0738at 826.538 kb on + strand, within DVU0738at 826.553 kb on + strand, within DVU0738at 826.575 kb on + strand, within DVU0738at 826.653 kb on - strand, within DVU0738at 826.705 kb on - strand, within DVU0738at 826.725 kb on + strand, within DVU0738at 826.757 kb on + strand, within DVU0738at 826.757 kb on + strand, within DVU0738at 826.765 kb on - strand, within DVU0738at 826.787 kb on - strand, within DVU0738at 826.795 kb on + strand, within DVU0738at 826.832 kb on + strandat 826.919 kb on - strandat 826.921 kb on + strandat 826.924 kb on - strandat 827.045 kb on - strandat 827.050 kb on - strandat 827.116 kb on - strandat 827.207 kb on - strand, within DVU0739at 827.246 kb on - strand, within DVU0739at 827.299 kb on - strand, within DVU0739at 827.299 kb on - strand, within DVU0739at 827.316 kb on + strand, within DVU0739at 827.359 kb on + strand, within DVU0739at 827.412 kb on - strand, within DVU0739at 827.414 kb on + strand, within DVU0739at 827.417 kb on - strand, within DVU0739at 827.417 kb on - strand, within DVU0739at 827.487 kb on - strand, within DVU0739at 827.521 kb on + strand, within DVU0739at 827.521 kb on + strand, within DVU0739at 827.521 kb on + strand, within DVU0739at 827.521 kb on + strand, within DVU0739at 827.529 kb on - strand, within DVU0739at 827.529 kb on - strand, within DVU0739at 827.552 kb on + strand, within DVU0739at 827.565 kb on - strand, within DVU0739at 827.711 kb on + strandat 827.711 kb on + strandat 827.787 kb on - strandat 827.787 kb on - strandat 827.787 kb on - strandat 827.851 kb on + strandat 827.861 kb on - strandat 827.992 kb on + strandat 828.037 kb on + strand, within DVU0740at 828.037 kb on - strand, within DVU0740at 828.052 kb on - strand, within DVU0740at 828.052 kb on - strand, within DVU0740at 828.052 kb on - strand, within DVU0740at 828.071 kb on + strand, within DVU0740at 828.071 kb on + strand, within DVU0740at 828.076 kb on + strand, within DVU0740at 828.079 kb on - strand, within DVU0740at 828.083 kb on - strand, within DVU0740at 828.202 kb on + strand, within DVU0740at 828.332 kb on - strand, within DVU0740at 828.413 kb on + strand, within DVU0740at 828.423 kb on + strand, within DVU0740at 828.423 kb on + strand, within DVU0740at 828.423 kb on + strand, within DVU0740at 828.423 kb on + strand, within DVU0740at 828.500 kb on - strand, within DVU0740at 828.505 kb on - strand, within DVU0740at 828.513 kb on + strand, within DVU0740at 828.515 kb on - strand, within DVU0740

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Fluorophosphate 1mM
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826,081 + DVU0738 0.24 -0.3
826,114 + DVU0738 0.26 +0.0
826,126 + DVU0738 0.28 +0.3
826,134 - DVU0738 0.28 -0.3
826,166 + DVU0738 0.31 -1.2
826,207 + DVU0738 0.35 -0.5
826,326 + DVU0738 0.45 -0.0
826,334 - DVU0738 0.46 +0.9
826,341 - DVU0738 0.47 -1.1
826,354 - DVU0738 0.48 -0.4
826,378 - DVU0738 0.50 -0.6
826,378 - DVU0738 0.50 +0.1
826,468 + DVU0738 0.58 -0.3
826,469 + DVU0738 0.58 -1.1
826,488 + DVU0738 0.60 -0.5
826,538 + DVU0738 0.64 -0.6
826,553 + DVU0738 0.66 -1.0
826,575 + DVU0738 0.68 -0.1
826,653 - DVU0738 0.75 -0.9
826,705 - DVU0738 0.79 -0.7
826,725 + DVU0738 0.81 -0.2
826,757 + DVU0738 0.84 +0.4
826,757 + DVU0738 0.84 -0.1
826,765 - DVU0738 0.84 +0.1
826,787 - DVU0738 0.86 -0.2
826,795 + DVU0738 0.87 +0.1
826,832 + -0.4
826,919 - -0.4
826,921 + -0.3
826,924 - -0.8
827,045 - -0.2
827,050 - -0.3
827,116 - +0.1
827,207 - DVU0739 0.25 -0.3
827,246 - DVU0739 0.32 -0.3
827,299 - DVU0739 0.41 +0.2
827,299 - DVU0739 0.41 -0.1
827,316 + DVU0739 0.44 +1.1
827,359 + DVU0739 0.51 -0.2
827,412 - DVU0739 0.61 -1.9
827,414 + DVU0739 0.61 +0.1
827,417 - DVU0739 0.61 -2.0
827,417 - DVU0739 0.61 -0.9
827,487 - DVU0739 0.74 -0.1
827,521 + DVU0739 0.80 -0.0
827,521 + DVU0739 0.80 -0.3
827,521 + DVU0739 0.80 -0.8
827,521 + DVU0739 0.80 -0.1
827,529 - DVU0739 0.81 -1.3
827,529 - DVU0739 0.81 -0.7
827,552 + DVU0739 0.85 -0.3
827,565 - DVU0739 0.87 -0.9
827,711 + +0.9
827,711 + +0.4
827,787 - -1.0
827,787 - +0.2
827,787 - -0.0
827,851 + +0.3
827,861 - +0.2
827,992 + +1.4
828,037 + DVU0740 0.10 +0.1
828,037 - DVU0740 0.10 -0.3
828,052 - DVU0740 0.12 +0.4
828,052 - DVU0740 0.12 +1.1
828,052 - DVU0740 0.12 -0.1
828,071 + DVU0740 0.13 -0.2
828,071 + DVU0740 0.13 -0.3
828,076 + DVU0740 0.14 -0.8
828,079 - DVU0740 0.14 +0.1
828,083 - DVU0740 0.14 -0.8
828,202 + DVU0740 0.24 +0.6
828,332 - DVU0740 0.36 -0.5
828,413 + DVU0740 0.42 +0.7
828,423 + DVU0740 0.43 +1.1
828,423 + DVU0740 0.43 -0.1
828,423 + DVU0740 0.43 -1.1
828,423 + DVU0740 0.43 +0.6
828,500 - DVU0740 0.50 +0.2
828,505 - DVU0740 0.50 -0.2
828,513 + DVU0740 0.51 -0.0
828,515 - DVU0740 0.51 -0.7

Or see this region's nucleotide sequence