Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_5096

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
6,047,968	+				+0.2
6,047,968	+				-1.9
6,047,968	+				-1.5
6,047,968	+				+1.7
6,047,968	+				+0.3
6,047,968	+				-0.7
6,047,968	+				-1.7
6,047,968	+				+0.3
6,047,968	+				-0.4
6,047,968	+				-1.4
6,047,968	+				+2.0
6,047,969	-				-1.2
6,047,969	-				+0.0
6,047,969	-				-1.3
6,047,970	+				+1.1
6,047,971	-				-0.0
6,047,986	+				+0.4
6,047,987	-				-2.0
6,047,987	-				-1.5
6,047,988	+				+0.0
6,047,988	+				+1.9
6,047,989	-				+1.0
6,047,999	+				+0.9
6,047,999	+				-3.0
6,048,184	-		Psyr_5095	0.26	-0.5
6,048,184	-		Psyr_5095	0.26	-1.1
6,048,198	+		Psyr_5095	0.27	+1.3
6,048,250	+		Psyr_5095	0.33	-1.8
6,048,251	-		Psyr_5095	0.33	-3.0
6,048,251	-		Psyr_5095	0.33	-0.4
6,048,251	-		Psyr_5095	0.33	+0.4
6,048,285	+		Psyr_5095	0.37	+1.1
6,048,285	+		Psyr_5095	0.37	+1.8
6,048,285	+		Psyr_5095	0.37	+3.5
6,048,285	+		Psyr_5095	0.37	+1.6
6,048,285	+		Psyr_5095	0.37	+0.2
6,048,285	+		Psyr_5095	0.37	-0.3
6,048,285	+		Psyr_5095	0.37	+2.8
6,048,285	+		Psyr_5095	0.37	+0.9
6,048,285	+		Psyr_5095	0.37	+0.8
6,048,285	+		Psyr_5095	0.37	+1.6
6,048,285	+		Psyr_5095	0.37	+0.3
6,048,285	+		Psyr_5095	0.37	-0.6
6,048,285	+		Psyr_5095	0.37	-0.4
6,048,286	-		Psyr_5095	0.37	-1.7
6,048,286	-		Psyr_5095	0.37	+1.6
6,048,286	-		Psyr_5095	0.37	+0.8
6,048,286	-		Psyr_5095	0.37	-0.5
6,048,286	-		Psyr_5095	0.37	+2.0
6,048,286	-		Psyr_5095	0.37	-2.0
6,048,299	+		Psyr_5095	0.39	+0.3
6,048,299	+		Psyr_5095	0.39	+1.9
6,048,301	+		Psyr_5095	0.39	-0.7
6,048,302	-		Psyr_5095	0.39	+0.1
6,048,345	+		Psyr_5095	0.44	-0.4
6,048,346	-		Psyr_5095	0.44	-0.5
6,048,355	+		Psyr_5095	0.45	-2.0
6,048,355	+		Psyr_5095	0.45	-2.0
6,048,355	+		Psyr_5095	0.45	-2.7
6,048,355	+		Psyr_5095	0.45	+1.0
6,048,355	+		Psyr_5095	0.45	-1.4
6,048,355	+		Psyr_5095	0.45	-3.0
6,048,355	+		Psyr_5095	0.45	+0.7
6,048,356	-		Psyr_5095	0.45	-3.6
6,048,356	-		Psyr_5095	0.45	+2.7
6,048,356	-		Psyr_5095	0.45	+1.6
6,048,356	-		Psyr_5095	0.45	+1.4
6,048,357	+		Psyr_5095	0.45	-0.2
6,048,364	-		Psyr_5095	0.46	+0.8
6,048,469	-		Psyr_5095	0.58	+2.1
6,048,469	-		Psyr_5095	0.58	-0.2
6,048,598	+		Psyr_5095	0.72	-0.3
6,048,598	+		Psyr_5095	0.72	-1.1
6,048,598	+		Psyr_5095	0.72	+3.0
6,048,598	+		Psyr_5095	0.72	+0.0
6,048,598	+		Psyr_5095	0.72	-0.7
6,048,598	+		Psyr_5095	0.72	+3.0
6,048,598	+		Psyr_5095	0.72	+1.1
6,048,598	+		Psyr_5095	0.72	+0.6
6,048,598	+		Psyr_5095	0.72	-0.6
6,048,599	-		Psyr_5095	0.73	+0.6
6,048,599	-		Psyr_5095	0.73	+2.6
6,048,599	-		Psyr_5095	0.73	-1.5
6,048,599	-		Psyr_5095	0.73	+1.0
6,048,599	-		Psyr_5095	0.73	+1.6
6,048,626	+		Psyr_5095	0.76	-1.1
6,048,627	-		Psyr_5095	0.76	-0.8
6,048,661	+		Psyr_5095	0.80	+1.4
6,048,661	+		Psyr_5095	0.80	-1.7
6,048,662	-		Psyr_5095	0.80	+0.7
6,048,662	-		Psyr_5095	0.80	+1.2
6,048,662	-		Psyr_5095	0.80	+2.4
6,048,662	-		Psyr_5095	0.80	-1.1
6,048,662	-		Psyr_5095	0.80	-2.1
6,048,662	-		Psyr_5095	0.80	-1.0
6,048,702	+		Psyr_5095	0.84	+2.1
6,048,856	+				-0.4
6,048,856	+				+0.9
6,048,856	+				+1.6
6,048,856	+				-1.4
6,048,856	+				-2.0
6,048,857	-				-0.7
6,048,857	-				+0.6
6,048,857	-				-2.6
6,048,857	-				-0.0
6,048,857	-				+0.8
6,048,857	-				-1.4
6,048,857	-				+0.7
6,048,857	-				-1.0
6,048,857	-				-2.3
6,048,947	+		Psyr_5096	0.35	-3.3
6,048,948	-		Psyr_5096	0.36	-1.4
6,048,953	+		Psyr_5096	0.38	+0.8
6,048,953	+		Psyr_5096	0.38	-1.5
6,049,183	+				+1.8
6,049,184	-				+1.5
6,049,184	-				+0.0
6,049,184	-				+1.4
6,049,218	+		Psyr_5097	0.10	-2.1
6,049,219	-		Psyr_5097	0.10	-0.4
6,049,238	+		Psyr_5097	0.14	-3.0
6,049,239	-		Psyr_5097	0.14	-0.7
6,049,338	-		Psyr_5097	0.34	-0.4
6,049,497	+		Psyr_5097	0.66	+0.0
6,049,498	-		Psyr_5097	0.66	-0.3
6,049,498	-		Psyr_5097	0.66	-1.3
6,049,498	-		Psyr_5097	0.66	-1.4
6,049,512	+		Psyr_5097	0.69	-1.2
6,049,513	-		Psyr_5097	0.69	+0.4
6,049,543	+		Psyr_5097	0.76	-1.1
6,049,543	+		Psyr_5097	0.76	+1.0
6,049,543	+		Psyr_5097	0.76	+1.0
6,049,543	+		Psyr_5097	0.76	-1.4
6,049,543	+		Psyr_5097	0.76	-1.5
6,049,543	+		Psyr_5097	0.76	-0.3
6,049,543	+		Psyr_5097	0.76	+1.0
6,049,543	+		Psyr_5097	0.76	+0.5
6,049,543	+		Psyr_5097	0.76	+2.6
6,049,543	+		Psyr_5097	0.76	+0.8
6,049,543	+		Psyr_5097	0.76	+0.9
6,049,543	+		Psyr_5097	0.76	+0.6
6,049,544	-		Psyr_5097	0.76	+0.7
6,049,544	-		Psyr_5097	0.76	-1.6
6,049,544	-		Psyr_5097	0.76	+2.2
6,049,544	-		Psyr_5097	0.76	+1.8
6,049,544	-		Psyr_5097	0.76	+0.2
6,049,544	-		Psyr_5097	0.76	+0.9
6,049,544	-		Psyr_5097	0.76	-0.4
6,049,544	-		Psyr_5097	0.76	-0.9
6,049,544	-		Psyr_5097	0.76	-0.5
6,049,548	-		Psyr_5097	0.77	-0.2
6,049,548	-		Psyr_5097	0.77	+0.9
6,049,567	+		Psyr_5097	0.80	-1.0
6,049,567	+		Psyr_5097	0.80	-1.2
6,049,568	-		Psyr_5097	0.81	-2.7
6,049,662	+				+1.8
6,049,662	+				+2.3
6,049,663	-				-1.4
6,049,697	+				-2.0
6,049,706	+				+1.0
6,049,706	+				-2.2
6,049,706	+				+0.1
6,049,707	-				+2.4
6,049,707	-				+0.0
6,049,707	-				+0.9
6,049,734	+				-0.1
6,049,734	+				+3.3
6,049,735	-				-1.4
6,049,735	-				+0.3
6,049,735	-				+1.4
6,049,735	-				+0.8
6,049,735	-				+0.1
6,049,869	+		Psyr_5098	0.26	+2.0
6,049,869	+		Psyr_5098	0.26	+1.8
6,049,869	+		Psyr_5098	0.26	+0.5
6,049,869	+		Psyr_5098	0.26	-0.3
6,049,966	+		Psyr_5098	0.45	+1.3
6,049,978	+		Psyr_5098	0.47	-1.2
6,049,978	+		Psyr_5098	0.47	-1.4
6,049,978	+		Psyr_5098	0.47	-0.4
6,049,979	-		Psyr_5098	0.47	-1.0
6,049,979	-		Psyr_5098	0.47	+0.7
6,049,979	-		Psyr_5098	0.47	-2.4
6,049,979	-		Psyr_5098	0.47	+0.7