Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4784 and Psyr_4785 are separated by 228 nucleotides Psyr_4785 and Psyr_4786 are separated by 55 nucleotides Psyr_4786 and Psyr_4787 are separated by 319 nucleotides
Psyr_4784: Psyr_4784 - Peptidase M19, renal dipeptidase, at 5,672,647 to 5,673,624
_4784
Psyr_4785: Psyr_4785 - Protein of unknown function DUF1311, at 5,673,853 to 5,674,263
_4785
Psyr_4786: Psyr_4786 - hypothetical protein, at 5,674,319 to 5,674,738
_4786
Psyr_4787: Psyr_4787 - fructose-bisphosphate aldolase, at 5,675,058 to 5,676,122
_4787
Position (kb) 5673
5674
5675 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5672.884 kb on - strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.924 kb on + strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.925 kb on - strand, within Psyr_4784 at 5672.943 kb on - strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.092 kb on + strand, within Psyr_4784 at 5673.093 kb on - strand, within Psyr_4784 at 5673.234 kb on - strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.266 kb on + strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.267 kb on - strand, within Psyr_4784 at 5673.315 kb on - strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.332 kb on + strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.333 kb on - strand, within Psyr_4784 at 5673.607 kb on + strand at 5673.607 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.688 kb on + strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.689 kb on - strand at 5673.790 kb on - strand at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.905 kb on + strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5673.906 kb on - strand, within Psyr_4785 at 5674.086 kb on + strand, within Psyr_4785 at 5674.237 kb on + strand at 5674.238 kb on - strand at 5674.262 kb on - strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.291 kb on + strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.292 kb on - strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.293 kb on + strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.294 kb on - strand at 5674.324 kb on + strand at 5674.324 kb on + strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.325 kb on - strand at 5674.335 kb on + strand at 5674.335 kb on + strand at 5674.336 kb on - strand at 5674.685 kb on + strand, within Psyr_4786 at 5674.686 kb on - strand, within Psyr_4786 at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.700 kb on + strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.701 kb on - strand at 5674.778 kb on + strand at 5674.778 kb on + strand at 5674.860 kb on - strand at 5674.860 kb on - strand at 5674.881 kb on + strand at 5674.881 kb on + strand at 5674.951 kb on + strand at 5674.951 kb on + strand at 5674.951 kb on + strand at 5674.952 kb on - strand at 5674.952 kb on - strand at 5674.952 kb on - strand at 5675.013 kb on + strand at 5675.013 kb on + strand at 5675.013 kb on + strand at 5675.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,672,884 - Psyr_4784 0.24 -0.5 5,672,924 + Psyr_4784 0.28 +1.3 5,672,924 + Psyr_4784 0.28 +0.0 5,672,924 + Psyr_4784 0.28 +2.1 5,672,924 + Psyr_4784 0.28 -1.9 5,672,924 + Psyr_4784 0.28 -2.4 5,672,924 + Psyr_4784 0.28 -1.6 5,672,925 - Psyr_4784 0.28 -1.0 5,672,925 - Psyr_4784 0.28 +0.1 5,672,925 - Psyr_4784 0.28 -0.4 5,672,925 - Psyr_4784 0.28 -1.8 5,672,943 - Psyr_4784 0.30 -1.0 5,673,092 + Psyr_4784 0.46 -1.1 5,673,092 + Psyr_4784 0.46 -1.8 5,673,092 + Psyr_4784 0.46 +0.6 5,673,093 - Psyr_4784 0.46 +0.2 5,673,234 - Psyr_4784 0.60 -1.2 5,673,266 + Psyr_4784 0.63 -0.5 5,673,266 + Psyr_4784 0.63 +1.6 5,673,267 - Psyr_4784 0.63 +0.4 5,673,267 - Psyr_4784 0.63 +0.8 5,673,267 - Psyr_4784 0.63 +3.1 5,673,315 - Psyr_4784 0.68 +1.8 5,673,332 + Psyr_4784 0.70 +1.0 5,673,332 + Psyr_4784 0.70 -0.4 5,673,333 - Psyr_4784 0.70 -1.2 5,673,333 - Psyr_4784 0.70 +1.2 5,673,607 + +1.2 5,673,607 + -1.1 5,673,688 + -2.2 5,673,688 + +0.3 5,673,688 + -0.9 5,673,688 + -0.0 5,673,688 + -0.5 5,673,689 - +0.6 5,673,689 - +2.0 5,673,689 - +1.0 5,673,689 - -1.5 5,673,790 - -0.4 5,673,905 + Psyr_4785 0.13 +0.3 5,673,905 + Psyr_4785 0.13 -1.0 5,673,905 + Psyr_4785 0.13 -1.0 5,673,905 + Psyr_4785 0.13 +2.7 5,673,905 + Psyr_4785 0.13 -1.0 5,673,905 + Psyr_4785 0.13 +1.0 5,673,905 + Psyr_4785 0.13 -1.0 5,673,905 + Psyr_4785 0.13 +0.3 5,673,905 + Psyr_4785 0.13 +1.0 5,673,905 + Psyr_4785 0.13 +0.5 5,673,905 + Psyr_4785 0.13 -2.2 5,673,905 + Psyr_4785 0.13 +0.6 5,673,906 - Psyr_4785 0.13 +1.3 5,673,906 - Psyr_4785 0.13 +0.7 5,673,906 - Psyr_4785 0.13 -1.8 5,673,906 - Psyr_4785 0.13 -0.1 5,673,906 - Psyr_4785 0.13 -1.0 5,673,906 - Psyr_4785 0.13 +5.6 5,673,906 - Psyr_4785 0.13 +0.0 5,673,906 - Psyr_4785 0.13 +1.4 5,673,906 - Psyr_4785 0.13 +1.1 5,673,906 - Psyr_4785 0.13 +2.6 5,673,906 - Psyr_4785 0.13 -1.6 5,673,906 - Psyr_4785 0.13 +0.5 5,673,906 - Psyr_4785 0.13 +0.7 5,673,906 - Psyr_4785 0.13 -2.3 5,673,906 - Psyr_4785 0.13 -1.4 5,673,906 - Psyr_4785 0.13 +0.0 5,673,906 - Psyr_4785 0.13 -2.0 5,673,906 - Psyr_4785 0.13 -1.2 5,674,086 + Psyr_4785 0.57 -2.0 5,674,237 + +2.1 5,674,238 - +0.4 5,674,262 - -1.6 5,674,291 + -1.7 5,674,291 + +1.4 5,674,291 + +1.9 5,674,291 + +0.4 5,674,292 - -1.0 5,674,292 - +1.2 5,674,292 - -1.2 5,674,292 - +0.2 5,674,292 - +1.8 5,674,292 - -0.8 5,674,292 - +2.4 5,674,292 - -2.6 5,674,292 - -2.8 5,674,292 - +3.2 5,674,292 - +0.2 5,674,292 - -0.4 5,674,292 - -2.2 5,674,292 - -2.2 5,674,293 + +1.6 5,674,293 + +0.4 5,674,293 + -0.6 5,674,294 - -2.8 5,674,294 - +0.5 5,674,294 - +2.3 5,674,294 - -1.8 5,674,294 - -1.4 5,674,294 - +0.0 5,674,324 + -0.0 5,674,324 + +0.6 5,674,325 - -2.0 5,674,325 - +2.5 5,674,325 - -0.1 5,674,335 + -1.8 5,674,335 + -2.0 5,674,336 - +0.7 5,674,685 + Psyr_4786 0.87 +1.1 5,674,686 - Psyr_4786 0.87 +0.2 5,674,700 + +0.0 5,674,700 + +0.9 5,674,700 + +1.1 5,674,700 + -3.3 5,674,700 + +0.8 5,674,700 + -0.2 5,674,700 + +1.6 5,674,700 + +0.1 5,674,701 - -1.1 5,674,701 - +1.8 5,674,701 - +0.6 5,674,701 - +0.9 5,674,701 - +1.4 5,674,778 + +1.1 5,674,778 + -2.1 5,674,860 - +1.5 5,674,860 - +1.5 5,674,881 + -2.1 5,674,881 + +1.5 5,674,951 + +2.3 5,674,951 + -2.1 5,674,951 + +0.4 5,674,952 - -0.5 5,674,952 - -1.6 5,674,952 - +0.3 5,675,013 + +0.5 5,675,013 + -0.8 5,675,013 + +0.4 5,675,014 - -1.6
Or see this region's nucleotide sequence